PAWR

gene
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Also known as par-4PAR4

Summary

PAWR (pro-apoptotic WT1 regulator, HGNC:8614) is a protein-coding gene on chromosome 12q21.2, encoding PRKC apoptosis WT1 regulator protein (Q96IZ0). Pro-apoptotic protein capable of selectively inducing apoptosis in cancer cells, sensitizing the cells to diverse apoptotic stimuli and causing regression of tumors in animal models.

This gene encodes a tumor suppressor protein that selectively induces apoptosis in cancer cells through intracellular and extracellular mechanisms. The intracellular mechanism involves the inhibition of pro-survival pathways and the activation of Fas-mediated apoptosis, while the extracellular mechanism involves the binding of a secreted form of this protein to glucose regulated protein 78 (GRP78) on the cell surface, which leads to activation of the extrinsic apoptotic pathway. This gene is located on the unstable human chromosomal 12q21 region and is often deleted or mutated different tumors. The encoded protein also plays an important role in the progression of age-related diseases.

Source: NCBI Gene 5074 — RefSeq curated summary.

At a glance

  • GWAS associations: 2
  • Clinical variants (ClinVar): 16 total
  • MANE Select transcript: NM_002583

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:8614
Approved symbolPAWR
Namepro-apoptotic WT1 regulator
Location12q21.2
Locus typegene with protein product
StatusApproved
Aliasespar-4, PAR4
Ensembl geneENSG00000177425
Ensembl biotypeprotein_coding
OMIM601936
Entrez5074

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 12 protein_coding, 5 protein_coding_CDS_not_defined, 1 retained_intron

ENST00000328827, ENST00000547016, ENST00000547571, ENST00000547699, ENST00000548075, ENST00000548426, ENST00000549050, ENST00000550006, ENST00000550603, ENST00000551712, ENST00000552637, ENST00000903360, ENST00000903361, ENST00000903362, ENST00000903363, ENST00000912080, ENST00000912081, ENST00000970643

RefSeq mRNA: 3 — MANE Select: NM_002583 NM_001354732, NM_001354733, NM_002583

CCDS: CCDS31863

Canonical transcript exons

ENST00000328827 — 7 exons

ExonStartEnd
ENSE000012706807961357579613609
ENSE000012706887962107679621207
ENSE000012707017969087279690964
ENSE000013292807968972979690391
ENSE000023472377958487979592693
ENSE000035624877959432979594433
ENSE000036200147959651179596658

Expression profiles

Bgee: expression breadth ubiquitous, 271 present calls, max score 97.14.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 35.1825 / max 447.7498, expressed in 1552 samples.

FANTOM5 promoters (19 alternative TSS)

Promoter IDTPM avgSamples expressed
1322746.62701356
1322705.93141306
1322735.92801195
1322714.05381321
1322682.2524990
1322761.7422667
1322691.5454739
1322751.5011873
1322600.9379444
1322780.8535537

Top tissues by expression

286 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
germinal epithelium of ovaryUBERON:000130497.14gold quality
saphenous veinUBERON:000731896.17gold quality
body of uterusUBERON:000985396.12gold quality
colonic epitheliumUBERON:000039795.98gold quality
right coronary arteryUBERON:000162595.76gold quality
cauda epididymisUBERON:000436095.71gold quality
sural nerveUBERON:001548895.71gold quality
left uterine tubeUBERON:000130395.50gold quality
myometriumUBERON:000129695.34gold quality
parietal pleuraUBERON:000240094.98gold quality
left ovaryUBERON:000211994.90gold quality
popliteal arteryUBERON:000225094.88gold quality
tibial arteryUBERON:000761094.88gold quality
buccal mucosa cellCL:000233694.78gold quality
right ovaryUBERON:000211894.60gold quality
left coronary arteryUBERON:000162694.49gold quality
corpus epididymisUBERON:000435994.49gold quality
endocervixUBERON:000045894.46gold quality
aortaUBERON:000094794.35gold quality
uterusUBERON:000099594.34gold quality
right uterine tubeUBERON:000130294.28gold quality
left lobe of thyroid glandUBERON:000112094.20gold quality
visceral pleuraUBERON:000240194.20gold quality
endometriumUBERON:000129594.04gold quality
pleuraUBERON:000097794.01gold quality
coronary arteryUBERON:000162193.95gold quality
caput epididymisUBERON:000435893.93gold quality
thyroid glandUBERON:000204693.89gold quality
ectocervixUBERON:001224993.89gold quality
ovaryUBERON:000099293.87gold quality

Single-cell (SCXA)

Detected in 4 experiment(s), a significant marker in 3.

ExperimentMarker?Max mean expression
E-CURD-119yes20.15
E-MTAB-10553yes19.21
E-ANND-3yes10.65
E-HCAD-30no137.34

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

6 targets.

TargetRegulation
BCL2Repression
CCN3Activation
CDH2Repression
CEBPBRepression
DIABLOActivation
VIMRepression

Upstream regulators (CollecTRI, top): HOXC11, NCOA1

miRNA regulators (miRDB)

76 targeting PAWR, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-30A-5P100.0076.313233
HSA-MIR-30B-5P100.0076.293248
HSA-MIR-30C-5P100.0076.293248
HSA-MIR-30D-5P100.0076.323233
HSA-MIR-30E-5P100.0076.323242
HSA-MIR-4262100.0073.263931
HSA-MIR-3163100.0077.238605
HSA-MIR-340-5P100.0072.504437
HSA-MIR-181A-5P99.9972.962995
HSA-MIR-181B-5P99.9972.972996
HSA-MIR-181C-5P99.9972.952996
HSA-MIR-181D-5P99.9973.042997
HSA-MIR-4789-3P99.9970.752484
HSA-MIR-3692-3P99.9870.272139
HSA-MIR-103A-3P99.9869.141595
HSA-MIR-10799.9869.141595
HSA-MIR-548N99.9871.944170
HSA-MIR-1213699.9872.815713
HSA-MIR-569699.9872.364487
HSA-MIR-548AA99.9670.643753
HSA-MIR-548AP-3P99.9670.643753
HSA-MIR-548T-3P99.9670.643753
HSA-MIR-495-3P99.9672.814197
HSA-MIR-568899.9673.234504
HSA-MIR-570-3P99.9672.414910
HSA-MIR-391099.9571.132227
HSA-MIR-6508-5P99.9270.672465
HSA-MIR-129799.9173.413162
HSA-MIR-6809-3P99.9171.453814
HSA-MIR-568099.9169.833421

Literature-anchored findings (GeneRIF, showing 40)

  • Par-4 increases secretion of amyloid beta peptide 1-42, which contributes to the pathogenesis of Alzheimer’s disease. (PMID:11278808)
  • mechanical strain increased PAR-4 gene expression in macrophages (PMID:11910304)
  • role in regulating Bcl-2 through a WT1-binding site on the bcl-2 promoter (PMID:12644474)
  • Par-4 enables cells to circumvent inhibition of the central executioner caspase-3 by alternative activation of caspases following a decrease in expression levels of inhibitors of apoptosis proteins (PMID:12685825)
  • novel nuclear proapoptotic factor associated with PML NBs, which potentiates apoptosis, and interacts with Par-4 (PMID:12717420)
  • there is a unique death-inducing domain in PAR4 selective for apoptosis induction in cancer cells (SAC domain) (PMID:12897127)
  • death of dopaminergic neurons in Parkinson’s disease follows a degenerative pathway that circumvents the induction of Par-4. (PMID:13680279)
  • Par-4 is directly involved in regulating choline uptake by interacting with CHT1 and by reducing its incorporation on the cell surface (PMID:15090548)
  • Par-4 is directly involved in regulating choline uptake by interacting with CHT1 and reducing its incorporation to the cell surface. (PMID:15090548)
  • Par-4 exhibits an antitransforming capacity by antagonizing p185(BCR-ABL)-induced factor-independent proliferation in hematopoietic cells. (PMID:15246161)
  • Par-4 increases apoptosis by upregulating the CD95 receptor on the cell surface and, with concomitant decrease of the FLICE-like inhibitory protein (FLIP), by promoting cleavage of the initiator caspases-8 and -10. (PMID:15316756)
  • In the erythroleukemic cell line HEL, in contrast to other cell types, Par-4 fails to promote apoptosis, & instead upregulates BCL2, Daxx, & procaspases 8, 9, & 10. (PMID:15359646)
  • Selective apoptosis of cancer cells by the SAC domain of Par-4 involves phosphorylation of T155 by PKA. (PMID:15657440)
  • Data show that the C-terminal domain of PAR-4 is necessary for forming a complex with the cytosolic tail of BACE1. (PMID:15671026)
  • the mechanism for Ras-mediated down-regulation of Par-4 is by promoter methylation (PMID:15831492)
  • SSB-1, SSB-2 and SSB-4, but not SSB-3, bind prostate apoptosis response protein-4 (Par-4) (PMID:16369487)
  • review of prominent structural and functional features of Par-4 and the multiple levels of regulation of its apoptotic function [review] (PMID:16382046)
  • Results suggest that, in addition to its proapoptotic function, par-4 acts as a novel transcription cofactor for androgen receptors to target c-FLIP gene expression. (PMID:16720717)
  • The induction of apoptosis by arsenic compounds was accompanied by down-regulation of hTERT and wt1 mRNA and protein expression but up-regulation of par-4. (PMID:16966277)
  • Par-4 is a relevant tumor suppressor gene in human endometrial carcinogenesis. (PMID:17332319)
  • Data suggest that the cytoplasmic localization and expression level of endogenous Par-4 in nasopharyngeal carcinoma cell lines are not sufficient to augment apoptosis. (PMID:17881119)
  • Platelet PAR-1/PAR-4 stimulation causes rapid Akt phosphorylation downstream of PLC, whereas with continuous stimulation, ADP and PI3K are required for maintaining Akt phosphorylation. (PMID:17883592)
  • Downregulation of PAR-4, a pro-apoptotic gene, is associated with pancreatic tumors harboring K-ras mutation (PMID:17893871)
  • Levels of phospho-Akt are decreased in Caki cells overexpressing Par-4 cells to a significantly greater extent than in Caki/Vector cells by treatment with thapsigargin.This is associated with decreased levels of phospho-PDK1, the kinase upstream of Akt. (PMID:18041764)
  • No significant genetic association was found with schizophrenia or Major Depressive Disorder or Bipolar Disorder. (PMID:18085546)
  • Our results indicate that the PAWR gene is associated with schizophrenia in our population, and this study provides genetic evidence to support the dopamine hypothesis of schizophrenia. (PMID:18281137)
  • No association between genetic variations in the human PAWR gene and tardive dyskinesia in schizophrenia has been found. (PMID:18506731)
  • The lack of Par-4 dramatically enhances Ras-induced lung carcinoma formation in vivo, acting as a negative regulator of Akt activation. (PMID:18650932)
  • Expression of full-length Par-4 in human-bone mesenchymal cells resulted in increased activity of the Smac promoter. (PMID:18660514)
  • findings suggest that Par-4 serves as an intracellular repressor of TOP1 catalytic activity and regulates DNA topology to suppress cellular transformation (PMID:18676842)
  • Par-4 is a tumor suppressor protein with a pro-apoptotic function. Epigenetic silencing of Par-4 is seen in diverse tumors, [REVIEW] (PMID:18836307)
  • BMP-9 induced apoptosis in PC-3 cells through the up-regulation of prostate apoptosis response-4. (PMID:18922975)
  • These results suggest that prostate apoptosis response 4 does not play a major role in methamphetamine-use disorders in the Japanese population. (PMID:18991852)
  • siRNA against Par-4 gene could inhibit the apoptosis of human bone marrow mesenchymal stem cells. (PMID:19099901)
  • LMP-1 negatively influences the pro-apoptosis protein Par-4 by the coordination of multiple signaling pathways. (PMID:19250735)
  • cooperation between Par-4 and PTEN as relevant for the development of prostate cancer and implicate the NF-kappaB pathway as a critical event in prostate tumorigenesis. (PMID:19470463)
  • Par-4 activates an extrinsic pathway involving cell surface GRP78 receptor for induction of apoptosis. (PMID:19632185)
  • These data suggest PAWR is a novel PITX2-interacting protein that regulates PITX2 activity in ocular cells. (PMID:19801652)
  • Endoplasmic reticulum stress causes translocation of the Par-4-GRP78 complex from the ER to the plasma membrane, and through a positive feedback loop, extracellular Par-4 binds to cell surface GRP78 activating the extrinsic apoptotic pathway. Review. (PMID:19823030)
  • Compared to normal controls, mean Par-4 levels appeared slightly lower in schizophrenia and bipolar disorder. However, in major depression, Par-4 was decreased by 67% compared to normal controls. (PMID:20067857)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_reriopawrENSDARG00000045486
mus_musculusPawrENSMUSG00000035873
rattus_norvegicusPawrENSRNOG00000005917

Protein

Protein identifiers

PRKC apoptosis WT1 regulator proteinQ96IZ0 (reviewed: Q96IZ0)

Alternative names: Prostate apoptosis response 4 protein

All UniProt accessions (5): A0A0B4J260, F8W1M8, Q96IZ0, H0YHP5, H0YI16

UniProt curated annotations — full annotation on UniProt →

Function. Pro-apoptotic protein capable of selectively inducing apoptosis in cancer cells, sensitizing the cells to diverse apoptotic stimuli and causing regression of tumors in animal models. Induces apoptosis in certain cancer cells by activation of the Fas prodeath pathway and coparallel inhibition of NF-kappa-B transcriptional activity. Inhibits the transcriptional activation and augments the transcriptional repression mediated by WT1. Down-regulates the anti-apoptotic protein BCL2 via its interaction with WT1. Also seems to be a transcriptional repressor by itself. May be directly involved in regulating the amyloid precursor protein (APP) cleavage activity of BACE1.

Subunit / interactions. Homooligomer. Interacts (via the C-terminal region) with WT1. Interacts with THAP1. Interacts with AATF. Interacts with BACE1. Interacts with SPSB1 (via B30.2/SPRY domain); this interaction is direct and occurs in association with the Elongin BC complex. Interacts with SPSB2 (via B30.2/SPRY domain); this interaction occurs in association with the Elongin BC complex. Interacts with SPSB4 (via B30.2/SPRY domain); this interaction occurs in association with the Elongin BC complex. Component of a ternary complex composed of SQSTM1 and PRKCZ. Interacts with actin.

Subcellular location. Cytoplasm. Nucleus.

Tissue specificity. Widely expressed. Expression is elevated in various neurodegenerative diseases such as amyotrophic lateral sclerosis, Alzheimer, Parkinson and Huntington diseases and stroke. Down-regulated in several cancers.

Post-translational modifications. Preferentially phosphorylated at the Thr-163 by PKC in cancer cells.

Domain organisation. The leucine-zipper domain is not essential for apoptosis, but is required for sensitization of cells to exogenous apoptotic insults and for interaction with its partners. The SAC domain is a death-inducing domain selective for apoptosis induction in cancer cells. This domain is essential for nuclear entry, Fas activation, inhibition of NF-kappa-B activity and induction of apoptosis in cancer cells. The B30.2/SPRY domain-binding motif mediates recognition by proteins containing a B30.2/SPRY domain.

Induction. By apoptosis.

RefSeq proteins (3): NP_001341661, NP_001341662, NP_002574* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR026117Par-4Family

UniProt features (27 total): compositionally biased region 5, mutagenesis site 5, sequence variant 4, region of interest 3, modified residue 3, sequence conflict 3, short sequence motif 2, chain 1, coiled-coil region 1

Structure

Experimental structures (PDB)

1 structures.

PDBMethodResolution (Å)
2JK9X-RAY DIFFRACTION1.79

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q96IZ0-F165.860.28

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (3): 108, 163, 231

Mutagenesis-validated functional residues (5):

PositionPhenotype
66no loss of interaction with spsb1, spsb2 and spsb4.
68increased interaction with spsb2. only slightly increased interaction with spsb4. increased interaction with spsb1, spsb
69only slightly increased interaction with spsb2. only slightly increased interaction with spsb4. increased interaction wi
71loss of interaction with spsb1, spsb2 and spsb4.
72loss of interaction with spsb1-elongin bc complex and spsb2 and spsb4.

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 317 (showing top): GOBP_REGULATION_OF_T_CELL_RECEPTOR_SIGNALING_PATHWAY, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_REGULATION_OF_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, LIANG_HEMATOPOIESIS_STEM_CELL_NUMBER_SMALL_VS_HUGE_UP, BERENJENO_ROCK_SIGNALING_NOT_VIA_RHOA_DN, HORIUCHI_WTAP_TARGETS_DN, GOBP_ACTIN_FILAMENT_BUNDLE_ORGANIZATION, MODULE_255, GOBP_B_CELL_ACTIVATION, GOBP_NEGATIVE_REGULATION_OF_LEUKOCYTE_PROLIFERATION, BASSO_HAIRY_CELL_LEUKEMIA_DN, GOBP_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, GOBP_NEGATIVE_REGULATION_OF_B_CELL_ACTIVATION, MODULE_317

GO Biological Process (14): negative regulation of transcription by RNA polymerase II (GO:0000122), apoptotic process (GO:0006915), positive regulation of gene expression (GO:0010628), negative regulation of gene expression (GO:0010629), negative regulation of B cell proliferation (GO:0030889), negative regulation of T cell proliferation (GO:0042130), positive regulation of amyloid precursor protein biosynthetic process (GO:0042986), positive regulation of apoptotic process (GO:0043065), negative regulation of fibroblast proliferation (GO:0048147), negative regulation of T cell receptor signaling pathway (GO:0050860), actin filament bundle assembly (GO:0051017), apoptotic signaling pathway (GO:0097190), positive regulation of hydrogen peroxide-mediated programmed cell death (GO:1901300), positive regulation of cellular senescence (GO:2000774)

GO Molecular Function (5): transcription corepressor activity (GO:0003714), actin binding (GO:0003779), enzyme binding (GO:0019899), leucine zipper domain binding (GO:0043522), protein binding (GO:0005515)

GO Cellular Component (8): chromatin (GO:0000785), nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), actin filament (GO:0005884), plasma membrane (GO:0005886), actin cytoskeleton (GO:0015629), ciliary tip (GO:0097542)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure4
negative regulation of DNA-templated transcription2
gene expression2
regulation of gene expression2
negative regulation of lymphocyte proliferation2
apoptotic process2
positive regulation of programmed cell death2
regulation of transcription by RNA polymerase II1
transcription by RNA polymerase II1
programmed cell death1
apoptotic signaling pathway1
execution phase of apoptosis1
positive regulation of macromolecule biosynthetic process1
negative regulation of macromolecule biosynthetic process1
regulation of B cell proliferation1
B cell proliferation1
negative regulation of B cell activation1
T cell proliferation1
regulation of T cell proliferation1
negative regulation of T cell activation1
positive regulation of glycoprotein biosynthetic process1
amyloid precursor protein biosynthetic process1
regulation of amyloid precursor protein biosynthetic process1
regulation of apoptotic process1
negative regulation of cell population proliferation1
fibroblast proliferation1
regulation of fibroblast proliferation1
T cell receptor signaling pathway1
regulation of T cell receptor signaling pathway1
negative regulation of antigen receptor-mediated signaling pathway1
cellular component assembly1
actin filament bundle organization1
signal transduction1
hydrogen peroxide-mediated programmed cell death1
regulation of hydrogen peroxide-mediated programmed cell death1
positive regulation of cellular process1
cellular senescence1
regulation of cellular senescence1
transcription coregulator activity1
cytoskeletal protein binding1

Protein interactions and networks

STRING

668 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
PAWRTHAP1Q9NVV9887
PAWRHSPA5P11021882
PAWRDAPK3O43293876
PAWRWT1P19544873
PAWRCIAO1O76071769
PAWRSLC18A3Q16572712
PAWRF2RL3Q96RI0694
PAWRDRD2P14416671
PAWRRRM1P23921599
PAWRUACAQ9BZF9591
PAWRGDF2Q9UK05573
PAWRTHAP2Q9H0W7528
PAWRFLIIQ13045519
PAWRSPSB2Q99619514
PAWRSMAD9O15198511

IntAct

91 interactions, top by confidence:

ABTypeScore
CEP290CCP110psi-mi:“MI:2364”(proximity)0.890
HMG20AKDM1Apsi-mi:“MI:0914”(association)0.730
PAWRSpsb2psi-mi:“MI:0915”(physical association)0.710
Spsb2PAWRpsi-mi:“MI:0915”(physical association)0.710
CFTRESYT2psi-mi:“MI:0914”(association)0.710
PAWRSpsb2psi-mi:“MI:0407”(direct interaction)0.710
IKBIPSNAPINpsi-mi:“MI:0914”(association)0.670
MIA2RGPD8psi-mi:“MI:0914”(association)0.640
Spsb1PAWRpsi-mi:“MI:0915”(physical association)0.610
Spsb4PAWRpsi-mi:“MI:0915”(physical association)0.610
PAWRSpsb1psi-mi:“MI:0407”(direct interaction)0.610
Spsb4PAWRpsi-mi:“MI:0407”(direct interaction)0.610
PAWRSpsb4psi-mi:“MI:0407”(direct interaction)0.610
SPSB2PAWRpsi-mi:“MI:0407”(direct interaction)0.590
PAWRSPSB4psi-mi:“MI:0407”(direct interaction)0.590
PAWRHSPA5psi-mi:“MI:0915”(physical association)0.580
HSPA5PAWRpsi-mi:“MI:0915”(physical association)0.580

BioGRID (180): PAWR (Affinity Capture-MS), PAWR (Affinity Capture-MS), PAWR (Affinity Capture-MS), PAWR (Co-fractionation), PAWR (Proximity Label-MS), PAWR (Proximity Label-MS), PAWR (Affinity Capture-MS), PAWR (Affinity Capture-MS), PAWR (Affinity Capture-MS), PAWR (Affinity Capture-MS), PAWR (Affinity Capture-MS), PAWR (Affinity Capture-MS), PAWR (Affinity Capture-MS), PAWR (Affinity Capture-MS), PAWR (Affinity Capture-Western)

ESM2 similar proteins: A0A0R4IZ84, A0A1L8H8C0, A0A1L8HFX9, A2RUV4, F1LP90, F5HSE3, O43310, O60237, O75167, O88453, P41110, P61406, Q12830, Q1LVF3, Q2HJG4, Q2PFD7, Q3TLH4, Q5RAK6, Q5ZMS6, Q66HC1, Q6A0A2, Q6NRP6, Q6NZL0, Q6P1U3, Q6PKG0, Q75N33, Q7TN02, Q7TPM1, Q7YZA2, Q7Z6E9, Q80TN7, Q80XI3, Q86UR5, Q86US8, Q8IVL0, Q8IVL1, Q8K0V4, Q8N4C8, Q90YL3, Q90YY5

Diamond homologs: Q62627, Q925B0, Q96IZ0

SIGNOR signaling

4 interactions.

AEffectBMechanism
PAWR“down-regulates activity”WT1binding
FBXO45“down-regulates quantity by destabilization”PAWRbinding
“Skp1-Pam E3”“down-regulates quantity by destabilization”PAWRpolyubiquitination
AKT1“down-regulates activity”PAWRphosphorylation

Disease & clinical

Clinical variants and AI predictions

ClinVar

16 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance13
Likely benign0
Benign1

Top pathogenic / likely-pathogenic (0)

SpliceAI

2503 predictions. Top by Δscore:

VariantEffectΔscore
12:79592650:T:Adonor_gain1.0000
12:79592695:T:Cacceptor_gain1.0000
12:79594323:ACTT:Adonor_loss1.0000
12:79594327:A:ACdonor_gain1.0000
12:79594327:AC:Adonor_loss1.0000
12:79594327:ACT:Adonor_gain1.0000
12:79594328:C:CTdonor_gain1.0000
12:79594328:CT:Cdonor_gain1.0000
12:79594328:CTC:Cdonor_gain1.0000
12:79594328:CTCT:Cdonor_gain1.0000
12:79594328:CTCTA:Cdonor_gain1.0000
12:79594430:CTTC:Cacceptor_gain1.0000
12:79594432:TC:Tacceptor_gain1.0000
12:79594432:TCC:Tacceptor_loss1.0000
12:79594433:CCTGG:Cacceptor_gain1.0000
12:79594434:C:CCacceptor_gain1.0000
12:79594434:CTGGT:Cacceptor_loss1.0000
12:79594437:G:GCacceptor_gain1.0000
12:79594441:A:Cacceptor_gain1.0000
12:79594447:T:TCacceptor_gain1.0000
12:79596505:CCATA:Cdonor_loss1.0000
12:79596506:CATA:Cdonor_loss1.0000
12:79596507:ATAC:Adonor_loss1.0000
12:79596508:TA:Tdonor_loss1.0000
12:79596509:ACCTT:Adonor_loss1.0000
12:79596510:C:CTdonor_loss1.0000
12:79596654:TTGTG:Tacceptor_gain1.0000
12:79596655:TGTG:Tacceptor_gain1.0000
12:79596656:GTG:Gacceptor_gain1.0000
12:79596657:TG:Tacceptor_gain1.0000

AlphaMissense

2196 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
12:79592617:A:GL338P1.000
12:79592638:A:GL331P1.000
12:79592638:A:TL331H1.000
12:79592659:A:GL324P1.000
12:79689754:C:TG164D1.000
12:79689755:C:GG164R1.000
12:79689764:G:TR161S1.000
12:79689783:C:AR154S1.000
12:79689783:C:GR154S1.000
12:79689784:C:AR154M1.000
12:79689784:C:GR154T1.000
12:79690176:C:AW23C1.000
12:79690176:C:GW23C1.000
12:79690178:A:GW23R1.000
12:79690178:A:TW23R1.000
12:79592617:A:TL338Q0.999
12:79592635:A:GL332S0.999
12:79592646:A:CN328K0.999
12:79592646:A:TN328K0.999
12:79592648:T:CN328D0.999
12:79592689:A:GL314P0.999
12:79594357:A:GL303P0.999
12:79689755:C:AG164C0.999
12:79689757:G:AT163I0.999
12:79689766:C:GR160P0.999
12:79689768:C:AK159N0.999
12:79689768:C:GK159N0.999
12:79689769:T:GK159T0.999
12:79689770:T:CK159E0.999
12:79689771:C:AE158D0.999

dbSNP variants (sampled 300 via entrez): RS1000013756 (12:79666324 G>A,C), RS1000045571 (12:79687809 A>T), RS1000084046 (12:79603202 C>T), RS1000089507 (12:79598568 C>T), RS1000110527 (12:79620912 C>T), RS1000117600 (12:79690107 G>A,C), RS1000160871 (12:79625470 A>G), RS1000166689 (12:79649725 G>A,C), RS1000234868 (12:79594323 A>G), RS1000258743 (12:79601794 T>C), RS1000280201 (12:79589805 C>A,G,T), RS1000290869 (12:79596896 TG>T), RS1000292219 (12:79646287 C>T), RS1000301325 (12:79671377 A>G), RS1000328512 (12:79659364 T>A,C)

Disease associations

OMIM: gene MIM:601936 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

2 associations (top):

StudyTraitp-value
GCST000253_24Attention deficit hyperactivity disorder and conduct disorder4.000000e-06
GCST010703_313Brain morphology (MOSTest)1.000000e-23

EFO canonical traits (1, from GWAS)

EFO IDTrait name
EFO:0004346neuroimaging measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

Binding affinities (BindingDB)

118 measured of 118 human assays (118 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
4-[2-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]piperidin-1-yl]benzonitrileIC50240 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
2-methoxy-6-[6-methoxy-4-[[(2S)-1-(4-methoxyphenyl)pyrrolidin-2-yl]methoxy]-1-benzofuran-2-yl]imidazo[2,1-b][1,3,4]thiadiazoleIC50290 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
[(3R)-3-(hydroxymethyl)morpholin-4-yl]-[4-[4-[[5-methoxy-2-(2-methylimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1,3-benzothiazol-7-yl]oxymethyl]-1,3-thiazol-2-yl]phenyl]methanoneIC50330 nMUS-10238638: Benzothiazole and benzothiophene compounds
ethyl 4-[2-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]piperidin-1-yl]benzoateIC50370 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
2-methoxy-6-[6-methoxy-4-[[(2R)-1-(4-methoxyphenyl)pyrrolidin-2-yl]methoxy]-1-benzofuran-2-yl]imidazo[2,1-b][1,3,4]thiadiazoleIC50390 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
4-[(2R)-2-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]pyrrolidin-1-yl]benzonitrileIC50420 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[4-[[(2R)-1-(1,3-benzodioxol-5-yl)pyrrolidin-2-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC50420 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
2-methoxy-6-[6-methoxy-4-[[(2S)-1-[4-(trifluoromethyl)phenyl]pyrrolidin-2-yl]methoxy]-1-benzofuran-2-yl]imidazo[2,1-b][1,3,4]thiadiazoleIC50440 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[4-[[1-(4-chlorophenyl)piperidin-3-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC50440 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
2-methoxy-6-[6-methoxy-4-[[(2S)-1-(3-methoxyphenyl)pyrrolidin-2-yl]methoxy]-1-benzofuran-2-yl]imidazo[2,1-b][1,3,4]thiadiazoleIC50460 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[4-[[(2S)-1-(4-fluorophenyl)pyrrolidin-2-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC50470 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
2-[3-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]piperidin-1-yl]pyridine-4-carbonitrileIC50480 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
4-[(2S)-2-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]pyrrolidin-1-yl]benzonitrileIC50500 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
2-methoxy-6-[6-methoxy-4-[[1-[4-(trifluoromethyl)phenyl]piperidin-3-yl]methoxy]-1-benzofuran-2-yl]imidazo[2,1-b][1,3,4]thiadiazoleIC50510 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[4-[[(2S)-1-(1,3-benzodioxol-5-yl)pyrrolidin-2-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC50540 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[4-[[1-(1,3-benzodioxol-5-yl)piperidin-3-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC50540 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
ethyl 4-[(2R)-2-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]pyrrolidin-1-yl]benzoateIC50550 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[4-[[1-(3,5-difluoro-2-pyridinyl)piperidin-3-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC50560 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
2-methoxy-6-[6-methoxy-4-[[(2S)-1-[4-(trifluoromethoxy)phenyl]pyrrolidin-2-yl]methoxy]-1-benzofuran-2-yl]imidazo[2,1-b][1,3,4]thiadiazoleIC50600 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[4-[[(3R)-1-(4-chlorophenyl)piperidin-3-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC50700 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
2-methoxy-6-[6-methoxy-4-[[(2S)-1-(5-methoxy-2-pyridinyl)pyrrolidin-2-yl]methoxy]-1-benzofuran-2-yl]imidazo[2,1-b][1,3,4]thiadiazoleIC50710 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[4-[[1-(4-chlorophenyl)piperidin-2-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC50720 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[4-[[(2R)-1-(4-fluorophenyl)pyrrolidin-2-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC50740 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
2-methoxy-6-[6-methoxy-4-[[1-(4-methoxyphenyl)piperidin-3-yl]methoxy]-1-benzofuran-2-yl]imidazo[2,1-b][1,3,4]thiadiazoleIC50750 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[(3R)-3-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]piperidin-1-yl]pyridine-3-carbonitrileIC50750 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
4-[4-[[2-[2-(1,1-difluoroethyl)imidazo[2,1-b][1,3,4]thiadiazol-6-yl]-5-methoxy-1,3-benzothiazol-7-yl]oxymethyl]-1,3-thiazol-2-yl]-N-methyl-N-(oxan-4-yl)benzamideIC50760 nMUS-10238638: Benzothiazole and benzothiophene compounds
6-[4-[[(3R)-1-(4-chlorophenyl)pyrrolidin-3-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC50790 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[4-[[(3S)-1-(4-chlorophenyl)piperidin-3-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC50840 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
4-[(3S)-3-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]piperidin-1-yl]benzonitrileIC50860 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
ethyl 4-[(3S)-3-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]piperidin-1-yl]benzoateIC50890 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
[4-[4-[[2-[2-(1,1-difluoroethyl)imidazo[2,1-b][1,3,4]thiadiazol-6-yl]-5-methoxy-1,3-benzothiazol-7-yl]oxymethyl]-1,3-thiazol-2-yl]phenyl]-[(3R)-3-(hydroxymethyl)morpholin-4-yl]methanoneIC50920 nMUS-10238638: Benzothiazole and benzothiophene compounds
[4-(hydroxymethyl)-4-methylpiperidin-1-yl]-[4-[4-[[5-methoxy-2-(2-methylimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1,3-benzothiazol-7-yl]oxymethyl]-1,3-thiazol-2-yl]phenyl]methanoneIC50930 nMUS-10238638: Benzothiazole and benzothiophene compounds
6-[4-[[(2R)-1-(4-chlorophenyl)pyrrolidin-2-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC50950 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
2-methoxy-6-[6-methoxy-4-[[(2S)-1-(4-methylphenyl)pyrrolidin-2-yl]methoxy]-1-benzofuran-2-yl]imidazo[2,1-b][1,3,4]thiadiazoleIC50950 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
ethyl 4-[(3R)-3-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]piperidin-1-yl]benzoateIC50950 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
4-[4-[[5-methoxy-2-(2-methylimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1,3-benzothiazol-7-yl]oxymethyl]-1,3-thiazol-2-yl]-N-methyl-N-(oxan-4-yl)benzamideIC50980 nMUS-10238638: Benzothiazole and benzothiophene compounds
ethyl 4-[4-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]piperidin-1-yl]benzoateIC501000 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[4-[[1-(5-chloro-2-pyridinyl)piperidin-3-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC501000 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
N-(cyanomethyl)-4-[4-[[5-methoxy-2-(2-methylimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1,3-benzothiazol-7-yl]oxymethyl]-1,3-thiazol-2-yl]-N-methylbenzamideIC501100 nMUS-10238638: Benzothiazole and benzothiophene compounds
[4-(2-hydroxyethyl)piperidin-1-yl]-[4-[4-[[5-methoxy-2-(2-methylimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1,3-benzothiazol-7-yl]oxymethyl]-5-methyl-1,3-thiazol-2-yl]phenyl]methanoneIC501100 nMUS-10238638: Benzothiazole and benzothiophene compounds
6-[4-[[1-(2,4-dimethoxyphenyl)piperidin-3-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC501100 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
4-[4-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]piperidin-1-yl]benzonitrileIC501100 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
6-[4-[[(3S)-1-(4-fluorophenyl)piperidin-3-yl]methoxy]-6-methoxy-1-benzofuran-2-yl]-2-methoxyimidazo[2,1-b][1,3,4]thiadiazoleIC501100 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
[4-[4-[[2-[2-(1,1-difluoroethyl)imidazo[2,1-b][1,3,4]thiadiazol-6-yl]-5-methoxy-1,3-benzothiazol-7-yl]oxymethyl]-1,3-thiazol-2-yl]phenyl]-[(3R)-3-(hydroxymethyl)pyrrolidin-1-yl]methanoneIC501200 nMUS-10238638: Benzothiazole and benzothiophene compounds
N-(cyanomethyl)-4-[4-[[2-(2-cyclopropylimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-5-methoxy-1,3-benzothiazol-7-yl]oxymethyl]-1,3-thiazol-2-yl]-N-methylbenzamideIC501200 nMUS-10238638: Benzothiazole and benzothiophene compounds
4-[4-[[2-(2-ethylimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-5-methoxy-1,3-benzothiazol-7-yl]oxymethyl]-1,3-thiazol-2-yl]-N,N-dimethylbenzamideIC501200 nMUS-10238638: Benzothiazole and benzothiophene compounds
tert-butyl 3-[[6-methoxy-2-(6-methylimidazo[1,2-b]pyridazin-2-yl)-1-benzofuran-4-yl]oxymethyl]-4-(4-methoxyphenyl)piperazine-1-carboxylateIC501200 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
benzyl (3S)-3-[[6-methoxy-2-(2-methoxyimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-1-benzofuran-4-yl]oxymethyl]piperidine-1-carboxylateIC501200 nMUS-10329307: Heterocyclic compounds as inhibitors of platelet aggregation
4-[4-[[2-(2-ethylimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-5-methoxy-1,3-benzothiazol-7-yl]oxymethyl]-1,3-thiazol-2-yl]-N-methyl-N-[(3S)-oxolan-3-yl]benzamideIC501300 nMUS-10238638: Benzothiazole and benzothiophene compounds
[4-[4-[[2-(2-ethylimidazo[2,1-b][1,3,4]thiadiazol-6-yl)-5-methoxy-1,3-benzothiazol-7-yl]oxymethyl]-1,3-thiazol-2-yl]phenyl]-[4-(2-hydroxyethyl)piperidin-1-yl]methanoneIC501300 nMUS-10238638: Benzothiazole and benzothiophene compounds

CTD chemical–gene interactions

83 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidincreases methylation, affects expression, increases expression5
methylmercuric chlorideincreases expression, affects cotreatment4
sodium arsenitedecreases expression, increases expression3
Cisplatindecreases response to substance, affects cotreatment, decreases expression, increases expression, decreases reaction3
Estradioldecreases expression, decreases reaction, increases expression3
mercuric bromideincreases expression, affects cotreatment2
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, decreases expression, increases expression2
Air Pollutantsincreases oxidation, decreases expression, affects cotreatment, increases abundance2
Phenylmercuric Acetateaffects cotreatment, increases expression2
Smokedecreases expression, increases abundance2
Tobacco Smoke Pollutionaffects expression, increases expression2
7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxidedecreases expression2
Cyclosporineincreases expression2
aristolochic acid Idecreases expression1
FR900359increases phosphorylation1
TL8-506affects cotreatment, increases expression1
thymoquinoneincreases expression, increases reaction1
beauvericindecreases expression1
triphenyl phosphateaffects expression1
alpha-pineneaffects cotreatment, increases oxidation, increases abundance1
bisphenol Adecreases expression1
trichostatin Aincreases expression1
nimesulideincreases expression1
tetrahydropalmatinedecreases expression1
tris(1,3-dichloro-2-propyl)phosphateincreases expression1
cobaltous chlorideincreases expression1
perfluorooctanoic acidincreases expression1
sulindac sulfideincreases expression1
potassium chromate(VI)decreases expression1
2,3-bis(3’-hydroxybenzyl)butyrolactoneaffects cotreatment, decreases expression1

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): conduct disorder