PCCA-AS1

Summary

PCCA-AS1 (PCCA antisense RNA 1, HGNC:39901) is a long non-coding RNA gene on chromosome 13q32.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39901
Approved symbol	PCCA-AS1
Name	PCCA antisense RNA 1
Location	13q32.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234650
Ensembl biotype	lncRNA
Entrez	100885777
RNAcentral	URS000075B4F0 — lncRNA, 463 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000414553, ENST00000451662, ENST00000455958

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414553 — 3 exons

Exon	Start	End
ENSE00001610288	100480261	100480363
ENSE00004166723	100481120	100481199
ENSE00004166725	100479550	100479763

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 86.67.

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
quadriceps femoris	UBERON:0001377	86.67	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.98	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.46	gold quality
corpus callosum	UBERON:0002336	78.99	gold quality
cerebellar vermis	UBERON:0004720	78.88	gold quality
left testis	UBERON:0004533	78.01	gold quality
testis	UBERON:0000473	77.39	gold quality
right testis	UBERON:0004534	76.58	gold quality
calcaneal tendon	UBERON:0003701	74.08	gold quality
sural nerve	UBERON:0015488	72.43	gold quality
bone marrow cell	CL:0002092	71.96	silver quality
colonic epithelium	UBERON:0000397	68.45	gold quality
skeletal muscle tissue	UBERON:0001134	67.20	gold quality
adrenal tissue	UBERON:0018303	66.82	gold quality
hindlimb stylopod muscle	UBERON:0004252	66.72	gold quality
liver	UBERON:0002107	66.26	gold quality
ganglionic eminence	UBERON:0004023	66.07	gold quality
bone marrow	UBERON:0002371	65.32	gold quality
monocyte	CL:0000576	64.64	gold quality
primary visual cortex	UBERON:0002436	62.22	gold quality
tonsil	UBERON:0002372	61.84	gold quality
urinary bladder	UBERON:0001255	60.44	gold quality
superior frontal gyrus	UBERON:0002661	60.37	gold quality
stromal cell of endometrium	CL:0002255	60.07	gold quality
endometrium	UBERON:0001295	59.62	gold quality
thymus	UBERON:0002370	59.00	silver quality
kidney	UBERON:0002113	58.85	gold quality
muscle of leg	UBERON:0001383	58.59	gold quality
lymph node	UBERON:0000029	58.30	gold quality
cortex of kidney	UBERON:0001225	58.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.15

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.