PCCA-DT

Summary

PCCA-DT (PCCA divergent transcript, HGNC:53266) is a long non-coding RNA gene on chromosome 13q32.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53266
Approved symbol	PCCA-DT
Name	PCCA divergent transcript
Location	13q32.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000274605
Ensembl biotype	lncRNA
Entrez	105370333
RNAcentral	URS00008E3975 — lncRNA, 1008 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000612598, ENST00000654763, ENST00000788020, ENST00000788021, ENST00000788022

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000612598 — 2 exons

Exon	Start	End
ENSE00004166172	100085650	100086727
ENSE00004166174	100088633	100089111

Expression profiles

Bgee: expression breadth ubiquitous, 185 present calls, max score 92.02.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 5.9093 / max 110.7990, expressed in 1605 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
138046	5.0179	1594
138045	0.8914	404

Top tissues by expression

243 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
oocyte	CL:0000023	92.02	gold quality
right lobe of liver	UBERON:0001114	83.38	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.46	gold quality
mucosa of transverse colon	UBERON:0004991	82.10	gold quality
liver	UBERON:0002107	81.31	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.92	gold quality
prostate gland	UBERON:0002367	80.12	gold quality
minor salivary gland	UBERON:0001830	80.10	gold quality
body of stomach	UBERON:0001161	79.17	gold quality
saliva-secreting gland	UBERON:0001044	78.55	gold quality
esophagus mucosa	UBERON:0002469	78.38	gold quality
lower esophagus mucosa	UBERON:0035834	77.96	gold quality
right atrium auricular region	UBERON:0006631	77.77	gold quality
secondary oocyte	CL:0000655	77.33	silver quality
mouth mucosa	UBERON:0003729	77.26	gold quality
cardiac atrium	UBERON:0002081	77.17	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	77.02	gold quality
stomach	UBERON:0000945	76.75	gold quality
adult mammalian kidney	UBERON:0000082	76.27	gold quality
apex of heart	UBERON:0002098	76.19	gold quality
fundus of stomach	UBERON:0001160	75.09	gold quality
transverse colon	UBERON:0001157	75.06	gold quality
heart left ventricle	UBERON:0002084	75.00	gold quality
cardiac ventricle	UBERON:0002082	74.73	gold quality
ileal mucosa	UBERON:0000331	74.38	gold quality
rectum	UBERON:0001052	74.38	gold quality
heart	UBERON:0000948	74.28	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	73.59	gold quality
colonic mucosa	UBERON:0000317	73.37	gold quality
metanephros cortex	UBERON:0010533	73.28	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.36

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.