PCDH9-AS1

Summary

PCDH9-AS1 (PCDH9 antisense RNA 1, HGNC:39897) is a long non-coding RNA gene on chromosome 13q21.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39897
Approved symbol	PCDH9-AS1
Name	PCDH9 antisense RNA 1
Location	13q21.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234527
Ensembl biotype	lncRNA
Entrez	100874065
RNAcentral	URS000027D013 — lncRNA, 532 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000430861

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000430861 — 2 exons

Exon	Start	End
ENSE00001595009	66323174	66323561
ENSE00001702026	66303871	66304014

Expression profiles

Bgee: expression breadth broad, 57 present calls, max score 84.50.

Top tissues by expression

57 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.50	gold quality
corpus callosum	UBERON:0002336	67.35	gold quality
monocyte	CL:0000576	59.04	gold quality
saliva-secreting gland	UBERON:0001044	58.84	gold quality
kidney	UBERON:0002113	56.82	gold quality
blood	UBERON:0000178	52.24	gold quality
superior frontal gyrus	UBERON:0002661	52.11	gold quality
calcaneal tendon	UBERON:0003701	51.96	silver quality
right hemisphere of cerebellum	UBERON:0014890	51.14	gold quality
primary visual cortex	UBERON:0002436	50.58	gold quality
adrenal tissue	UBERON:0018303	49.95	gold quality
heart	UBERON:0000948	48.39	gold quality
prostate gland	UBERON:0002367	47.83	gold quality
gastrocnemius	UBERON:0001388	47.66	gold quality
liver	UBERON:0002107	46.23	silver quality
heart left ventricle	UBERON:0002084	46.17	silver quality
Brodmann (1909) area 9	UBERON:0013540	45.60	gold quality
caudate nucleus	UBERON:0001873	44.70	gold quality
right atrium auricular region	UBERON:0006631	44.50	gold quality
metanephros cortex	UBERON:0010533	44.46	gold quality
lower esophagus muscularis layer	UBERON:0035833	44.35	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	44.29	gold quality
endometrium	UBERON:0001295	43.99	gold quality
lung	UBERON:0002048	43.78	silver quality
right adrenal gland cortex	UBERON:0035827	43.05	silver quality
stomach	UBERON:0000945	42.45	silver quality
thyroid gland	UBERON:0002046	42.36	silver quality
omental fat pad	UBERON:0010414	42.01	gold quality
body of uterus	UBERON:0009853	41.71	silver quality
subcutaneous adipose tissue	UBERON:0002190	41.60	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.64

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.