PCDH9-AS3

Summary

PCDH9-AS3 (PCDH9 antisense RNA 3, HGNC:40427) is a long non-coding RNA gene on chromosome 13q21.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40427
Approved symbol	PCDH9-AS3
Name	PCDH9 antisense RNA 3
Location	13q21.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225263
Ensembl biotype	lncRNA
Entrez	100874086
RNAcentral	URS000075B33E — lncRNA, 522 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000434073, ENST00000456459, ENST00000795144, ENST00000795169, ENST00000795170, ENST00000795171, ENST00000795172, ENST00000850620

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434073 — 3 exons

Exon	Start	End
ENSE00001618063	66978373	66978471
ENSE00001674269	66977432	66977531
ENSE00001765926	66985497	66985776

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 96.30.

Top tissues by expression

85 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
corpus callosum	UBERON:0002336	96.30	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.63	gold quality
sural nerve	UBERON:0015488	72.19	gold quality
left testis	UBERON:0004533	69.64	gold quality
testis	UBERON:0000473	68.98	gold quality
cortical plate	UBERON:0005343	67.92	gold quality
right testis	UBERON:0004534	67.18	gold quality
colonic epithelium	UBERON:0000397	64.65	silver quality
primary visual cortex	UBERON:0002436	62.27	gold quality
calcaneal tendon	UBERON:0003701	61.46	gold quality
superior frontal gyrus	UBERON:0002661	58.81	gold quality
kidney	UBERON:0002113	57.83	gold quality
prefrontal cortex	UBERON:0000451	56.57	gold quality
vermiform appendix	UBERON:0001154	56.21	gold quality
liver	UBERON:0002107	54.67	silver quality
gastrocnemius	UBERON:0001388	52.35	gold quality
blood	UBERON:0000178	52.00	gold quality
adrenal tissue	UBERON:0018303	51.59	gold quality
monocyte	CL:0000576	50.93	silver quality
multicellular organism	UBERON:0000468	50.83	gold quality
stomach	UBERON:0000945	50.07	gold quality
body of pancreas	UBERON:0001150	49.29	gold quality
mucosa of stomach	UBERON:0001199	48.95	gold quality
Brodmann (1909) area 9	UBERON:0013540	48.72	gold quality
heart	UBERON:0000948	48.71	gold quality
right hemisphere of cerebellum	UBERON:0014890	48.68	gold quality
lung	UBERON:0002048	48.55	gold quality
adult mammalian kidney	UBERON:0000082	48.51	gold quality
frontal cortex	UBERON:0001870	48.49	gold quality
right adrenal gland	UBERON:0001233	48.31	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.