PCDHA-AS1

Summary

PCDHA-AS1 (protocadherin alpha cluster antisense RNA 1, HGNC:59170) is a long non-coding RNA gene on chromosome 5q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59170
Approved symbol	PCDHA-AS1
Name	protocadherin alpha cluster antisense RNA 1
Location	5q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000278915
Ensembl biotype	lncRNA
Entrez	112267934

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000624566

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000624566 — 1 exons

Exon	Start	End
ENSE00003757136	140875346	140875922

Expression profiles

Bgee: expression breadth ubiquitous, 101 present calls, max score 67.33.

Top tissues by expression

101 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ventricular zone	UBERON:0003053	67.33	gold quality
ganglionic eminence	UBERON:0004023	66.27	gold quality
cortical plate	UBERON:0005343	63.38	gold quality
liver	UBERON:0002107	60.74	gold quality
prefrontal cortex	UBERON:0000451	57.73	gold quality
lung	UBERON:0002048	56.03	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.46	gold quality
gall bladder	UBERON:0002110	55.34	gold quality
monocyte	CL:0000576	55.17	gold quality
endometrium	UBERON:0001295	54.81	gold quality
frontal cortex	UBERON:0001870	54.22	gold quality
primary visual cortex	UBERON:0002436	53.33	gold quality
placenta	UBERON:0001987	52.70	gold quality
islet of Langerhans	UBERON:0000006	52.35	gold quality
small intestine	UBERON:0002108	51.72	silver quality
lymph node	UBERON:0000029	51.46	gold quality
cerebral cortex	UBERON:0000956	50.79	gold quality
tonsil	UBERON:0002372	50.76	silver quality
pancreas	UBERON:0001264	50.70	gold quality
duodenum	UBERON:0002114	50.46	gold quality
kidney	UBERON:0002113	49.73	gold quality
cerebellar cortex	UBERON:0002129	49.41	silver quality
blood	UBERON:0000178	49.35	silver quality
myometrium	UBERON:0001296	49.12	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	49.01	gold quality
fallopian tube	UBERON:0003889	48.74	gold quality
cerebellar hemisphere	UBERON:0002245	48.70	gold quality
adult mammalian kidney	UBERON:0000082	48.38	gold quality
cortex of kidney	UBERON:0001225	48.25	silver quality
body of pancreas	UBERON:0001150	47.65	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.