PCDHB-AS1

Summary

PCDHB-AS1 (protocadherin beta cluster antisense RNA 1, HGNC:59172) is a long non-coding RNA gene on chromosome 5q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59172
Approved symbol	PCDHB-AS1
Name	protocadherin beta cluster antisense RNA 1
Location	5q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272154
Ensembl biotype	lncRNA
Entrez	145432491

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000607216, ENST00000624802, ENST00000625066, ENST00000625128, ENST00000660221, ENST00000718170, ENST00000718171, ENST00000718172, ENST00000718173, ENST00000718174, ENST00000718175, ENST00000718176, ENST00000718177, ENST00000718178, ENST00000718179

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000607216 — 2 exons

Exon	Start	End
ENSE00003699323	141100242	141100755
ENSE00003757126	141102141	141102213

Expression profiles

Bgee: expression breadth ubiquitous, 145 present calls, max score 93.49.

Top tissues by expression

245 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	93.49	gold quality
right testis	UBERON:0004534	92.49	gold quality
sperm	CL:0000019	91.17	gold quality
testis	UBERON:0000473	90.58	gold quality
adult organism	UBERON:0007023	78.69	gold quality
colonic epithelium	UBERON:0000397	73.62	gold quality
cortical plate	UBERON:0005343	72.44	gold quality
ganglionic eminence	UBERON:0004023	70.22	gold quality
sural nerve	UBERON:0015488	69.84	gold quality
ventricular zone	UBERON:0003053	67.98	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.18	gold quality
islet of Langerhans	UBERON:0000006	66.86	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	62.87	gold quality
calcaneal tendon	UBERON:0003701	61.98	gold quality
prefrontal cortex	UBERON:0000451	61.47	gold quality
pancreatic ductal cell	CL:0002079	57.45	silver quality
pancreas	UBERON:0001264	57.03	gold quality
monocyte	CL:0000576	55.92	gold quality
stromal cell of endometrium	CL:0002255	55.68	gold quality
tibialis anterior	UBERON:0001385	55.26	silver quality
cortex of kidney	UBERON:0001225	54.69	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.69	gold quality
epithelial cell of pancreas	CL:0000083	54.34	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
smooth muscle tissue	UBERON:0001135	54.28	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
ileal mucosa	UBERON:0000331	54.02	silver quality
kidney epithelium	UBERON:0004819	53.93	gold quality
tendon	UBERON:0000043	53.72	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.