PCDHB1-AS1

Summary

PCDHB1-AS1 (PCDHB1 antisense RNA 1, HGNC:56111) is a long non-coding RNA gene on chromosome 5q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56111
Approved symbol	PCDHB1-AS1
Name	PCDHB1 antisense RNA 1
Location	5q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000279047
Ensembl biotype	lncRNA
Entrez	101926905
RNAcentral	URS000075C966 — lncRNA, 1024 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 18 lncRNA

ENST00000623109, ENST00000623615, ENST00000623741, ENST00000624139, ENST00000624778, ENST00000656356, ENST00000718162, ENST00000718163, ENST00000718164, ENST00000718165, ENST00000718166, ENST00000718167, ENST00000718168, ENST00000718169, ENST00000718180, ENST00000718181, ENST00000718182, ENST00000718183

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000623109 — 4 exons

Exon	Start	End
ENSE00003755393	141077777	141078031
ENSE00003757188	141057750	141057850
ENSE00004034314	141046253	141046566
ENSE00004034318	141062411	141062533

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 86.68.

Top tissues by expression

126 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.68	gold quality
testis	UBERON:0000473	80.44	gold quality
left testis	UBERON:0004533	79.88	gold quality
right testis	UBERON:0004534	79.53	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.82	gold quality
ganglionic eminence	UBERON:0004023	74.58	gold quality
colonic epithelium	UBERON:0000397	71.78	silver quality
ventricular zone	UBERON:0003053	71.68	gold quality
cortical plate	UBERON:0005343	71.37	gold quality
stromal cell of endometrium	CL:0002255	70.63	gold quality
islet of Langerhans	UBERON:0000006	69.50	gold quality
smooth muscle tissue	UBERON:0001135	68.85	gold quality
cortex of kidney	UBERON:0001225	65.18	gold quality
gall bladder	UBERON:0002110	65.12	gold quality
endometrium	UBERON:0001295	64.74	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.26	gold quality
calcaneal tendon	UBERON:0003701	63.96	gold quality
superior frontal gyrus	UBERON:0002661	62.79	gold quality
prefrontal cortex	UBERON:0000451	62.65	gold quality
corpus callosum	UBERON:0002336	62.33	gold quality
placenta	UBERON:0001987	59.74	gold quality
pancreas	UBERON:0001264	58.89	gold quality
rectum	UBERON:0001052	58.72	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	58.45	gold quality
primary visual cortex	UBERON:0002436	58.12	gold quality
urinary bladder	UBERON:0001255	57.77	gold quality
frontal cortex	UBERON:0001870	57.54	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	57.49	gold quality
fallopian tube	UBERON:0003889	57.42	gold quality
duodenum	UBERON:0002114	56.81	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.