PCF11-AS1

Summary

PCF11-AS1 (PCF11 antisense RNA 1, HGNC:52263) is a long non-coding RNA gene on chromosome 11q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52263
Approved symbol	PCF11-AS1
Name	PCF11 antisense RNA 1
Location	11q14.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	ENST00000602322.1
Ensembl gene	ENSG00000269939
Ensembl biotype	lncRNA
Entrez	106736475
RNAcentral	URS0000A77213 — lncRNA, 1964 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000602322

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000602322 — 1 exons

Exon	Start	End
ENSE00003416803	83185521	83187036

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 79.56.

Top tissues by expression

175 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	79.56	gold quality
buccal mucosa cell	CL:0002336	79.13	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.33	gold quality
kidney epithelium	UBERON:0004819	75.33	silver quality
islet of Langerhans	UBERON:0000006	74.43	gold quality
oviduct epithelium	UBERON:0004804	73.53	gold quality
cardiac muscle of right atrium	UBERON:0003379	71.91	gold quality
left ventricle myocardium	UBERON:0006566	71.74	gold quality
adenohypophysis	UBERON:0002196	71.09	gold quality
corpus epididymis	UBERON:0004359	69.22	gold quality
germinal epithelium of ovary	UBERON:0001304	68.42	gold quality
fallopian tube	UBERON:0003889	67.32	gold quality
mucosa of paranasal sinus	UBERON:0005030	67.29	gold quality
caput epididymis	UBERON:0004358	67.12	gold quality
duodenum	UBERON:0002114	65.41	gold quality
pancreatic ductal cell	CL:0002079	65.13	silver quality
left ovary	UBERON:0002119	64.86	gold quality
superficial temporal artery	UBERON:0001614	64.62	silver quality
cauda epididymis	UBERON:0004360	64.15	gold quality
left lobe of thyroid gland	UBERON:0001120	63.09	gold quality
cardiac atrium	UBERON:0002081	62.86	gold quality
jejunal mucosa	UBERON:0000399	62.30	gold quality
adult mammalian kidney	UBERON:0000082	62.22	gold quality
Brodmann (1909) area 9	UBERON:0013540	61.49	gold quality
cerebellar hemisphere	UBERON:0002245	61.04	gold quality
ileal mucosa	UBERON:0000331	60.80	silver quality
tibia	UBERON:0000979	60.26	gold quality
gastrocnemius	UBERON:0001388	60.00	silver quality
pancreas	UBERON:0001264	59.86	silver quality
nucleus accumbens	UBERON:0001882	59.61	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.