PCGF3-AS1

Summary

PCGF3-AS1 (PCGF3 antisense RNA 1, HGNC:56108) is a long non-coding RNA gene on chromosome 4p16.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56108
Approved symbol	PCGF3-AS1
Name	PCGF3 antisense RNA 1
Location	4p16.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249592
Ensembl biotype	lncRNA
Entrez	100129917
RNAcentral	URS000075A2EA — lncRNA, 1700 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 20 — 20 lncRNA

ENST00000454037, ENST00000503185, ENST00000503405, ENST00000503571, ENST00000507446, ENST00000652800, ENST00000660016, ENST00000665579, ENST00000691800, ENST00000692343, ENST00000722162, ENST00000722163, ENST00000722164, ENST00000722165, ENST00000722166, ENST00000722167, ENST00000722168, ENST00000722169, ENST00000722300, ENST00000722301

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000454037 — 2 exons

Exon	Start	End
ENSE00001679434	764912	765074
ENSE00001770320	764487	764609

Expression profiles

Bgee: expression breadth ubiquitous, 224 present calls, max score 91.43.

Top tissues by expression

257 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
pancreatic ductal cell	CL:0002079	91.43	silver quality
pituitary gland	UBERON:0000007	90.52	gold quality
adenohypophysis	UBERON:0002196	89.55	gold quality
buccal mucosa cell	CL:0002336	89.46	gold quality
right lobe of thyroid gland	UBERON:0001119	88.72	gold quality
right hemisphere of cerebellum	UBERON:0014890	88.45	gold quality
cerebellar hemisphere	UBERON:0002245	88.28	gold quality
cerebellar cortex	UBERON:0002129	88.00	gold quality
thyroid gland	UBERON:0002046	87.63	gold quality
left lobe of thyroid gland	UBERON:0001120	87.60	gold quality
sural nerve	UBERON:0015488	87.40	gold quality
right uterine tube	UBERON:0001302	87.29	gold quality
cerebellum	UBERON:0002037	86.90	gold quality
tendon of biceps brachii	UBERON:0008188	86.87	gold quality
apex of heart	UBERON:0002098	86.47	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.25	gold quality
bone marrow cell	CL:0002092	86.04	gold quality
left ovary	UBERON:0002119	85.36	gold quality
colonic epithelium	UBERON:0000397	84.98	gold quality
right ovary	UBERON:0002118	84.67	gold quality
tonsil	UBERON:0002372	83.95	gold quality
body of pancreas	UBERON:0001150	83.92	gold quality
body of uterus	UBERON:0009853	83.91	gold quality
oviduct epithelium	UBERON:0004804	83.86	gold quality
middle temporal gyrus	UBERON:0002771	83.71	gold quality
ovary	UBERON:0000992	83.16	gold quality
nucleus accumbens	UBERON:0001882	83.09	gold quality
ileal mucosa	UBERON:0000331	83.04	gold quality
tibia	UBERON:0000979	82.95	gold quality
pancreas	UBERON:0001264	82.82	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.