PCHILR

Summary

PCHILR (prostate cancer associated HIP1 interacting lncRNA, HGNC:55418) is a long non-coding RNA gene on chromosome 16q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55418
Approved symbol	PCHILR
Name	prostate cancer associated HIP1 interacting lncRNA
Location	16q23.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	PCLN16
Ensembl gene	ENSG00000260884
Ensembl biotype	lncRNA
Entrez	129810500
RNAcentral	URS00026A2509 — lncRNA, 519 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000564455

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000564455 — 2 exons

Exon	Start	End
ENSE00002593055	74315146	74315634
ENSE00002606360	74313337	74313360

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 93.06.

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	93.06	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.63	gold quality
colonic epithelium	UBERON:0000397	81.79	gold quality
endometrium	UBERON:0001295	78.44	gold quality
apex of heart	UBERON:0002098	76.76	gold quality
right hemisphere of cerebellum	UBERON:0014890	75.19	gold quality
cerebellum	UBERON:0002037	74.56	gold quality
cortical plate	UBERON:0005343	74.48	gold quality
cerebellar cortex	UBERON:0002129	74.47	gold quality
cerebellar hemisphere	UBERON:0002245	74.35	gold quality
right ovary	UBERON:0002118	73.87	gold quality
left ovary	UBERON:0002119	73.82	gold quality
ovary	UBERON:0000992	73.76	gold quality
calcaneal tendon	UBERON:0003701	73.58	gold quality
right lobe of thyroid gland	UBERON:0001119	73.25	gold quality
body of uterus	UBERON:0009853	73.15	gold quality
mucosa of stomach	UBERON:0001199	72.91	gold quality
cortex of kidney	UBERON:0001225	72.87	gold quality
left lobe of thyroid gland	UBERON:0001120	72.81	gold quality
thyroid gland	UBERON:0002046	72.79	gold quality
skeletal muscle tissue	UBERON:0001134	72.70	gold quality
monocyte	CL:0000576	72.63	gold quality
right coronary artery	UBERON:0001625	72.60	gold quality
primary visual cortex	UBERON:0002436	72.53	gold quality
superior frontal gyrus	UBERON:0002661	72.34	gold quality
left adrenal gland cortex	UBERON:0035825	71.85	gold quality
adrenal gland	UBERON:0002369	71.78	gold quality
bone marrow cell	CL:0002092	71.66	silver quality
adrenal tissue	UBERON:0018303	71.54	gold quality
metanephros cortex	UBERON:0010533	71.53	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.46

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• A novel long non-coding RNA PCLN16 facilitates androgen receptor signaling in prostate cancer. (PMID:33387886)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.