PCNX4-DT

Summary

PCNX4-DT (PCNX4 divergent transcript, HGNC:55447) is a long non-coding RNA gene on chromosome 14q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55447
Approved symbol	PCNX4-DT
Name	PCNX4 divergent transcript
Location	14q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258553
Ensembl biotype	lncRNA
Entrez	105370524
RNAcentral	URS0002A6D73A — lncRNA, 1333 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 23 lncRNA

ENST00000554123, ENST00000555432, ENST00000565968, ENST00000823211, ENST00000823212, ENST00000823213, ENST00000823214, ENST00000823215, ENST00000823216, ENST00000823218, ENST00000823219, ENST00000823220, ENST00000823221, ENST00000823222, ENST00000823223, ENST00000823224, ENST00000823225, ENST00000823226, ENST00000823227, ENST00000823228, ENST00000823229, ENST00000823230, ENST00000823407

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000554123 — 4 exons

Exon	Start	End
ENSE00002486828	59973463	59973513
ENSE00002507728	60030296	60030378
ENSE00004231502	60091703	60091838
ENSE00004231528	59969091	59969402

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 81.08.

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.08	silver quality
right testis	UBERON:0004534	70.56	gold quality
left testis	UBERON:0004533	70.33	gold quality
testis	UBERON:0000473	70.05	gold quality
skeletal muscle tissue	UBERON:0001134	66.52	gold quality
islet of Langerhans	UBERON:0000006	62.37	gold quality
corpus callosum	UBERON:0002336	61.25	gold quality
bone marrow	UBERON:0002371	61.13	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.85	gold quality
muscle tissue	UBERON:0002385	60.35	gold quality
calcaneal tendon	UBERON:0003701	60.02	gold quality
prefrontal cortex	UBERON:0000451	58.42	gold quality
lower esophagus mucosa	UBERON:0035834	57.00	gold quality
monocyte	CL:0000576	56.94	gold quality
duodenum	UBERON:0002114	56.68	gold quality
liver	UBERON:0002107	56.54	gold quality
right uterine tube	UBERON:0001302	56.43	gold quality
stromal cell of endometrium	CL:0002255	56.30	gold quality
pancreas	UBERON:0001264	56.28	gold quality
vermiform appendix	UBERON:0001154	54.51	gold quality
kidney	UBERON:0002113	54.18	gold quality
blood	UBERON:0000178	53.96	gold quality
muscle of leg	UBERON:0001383	53.84	gold quality
placenta	UBERON:0001987	53.48	gold quality
gastrocnemius	UBERON:0001388	52.46	gold quality
adult mammalian kidney	UBERON:0000082	52.20	gold quality
lymph node	UBERON:0000029	51.98	gold quality
cortex of kidney	UBERON:0001225	51.78	gold quality
right lobe of liver	UBERON:0001114	51.45	gold quality
adrenal tissue	UBERON:0018303	51.07	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.39

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.