PDCD6-DT

Summary

PDCD6-DT (PDCD6 divergent transcript, HGNC:55580) is a long non-coding RNA gene on chromosome 5p15.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55580
Approved symbol	PDCD6-DT
Name	PDCD6 divergent transcript
Location	5p15.33
Locus type	RNA, long non-coding
Status	Approved
Aliases	HRAT5
Ensembl gene	ENSG00000248925
Ensembl biotype	lncRNA
Entrez	102467073
RNAcentral	URS000075B8A0 — lncRNA, 832 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000512642, ENST00000753214, ENST00000753215

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000512642 — 2 exons

Exon	Start	End
ENSE00003985862	269295	270207
ENSE00004100144	271345	271549

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 90.80.

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.80	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	89.22	gold quality
testis	UBERON:0000473	79.97	gold quality
left testis	UBERON:0004533	79.69	gold quality
right testis	UBERON:0004534	79.56	gold quality
ventricular zone	UBERON:0003053	72.36	gold quality
hindlimb stylopod muscle	UBERON:0004252	69.05	gold quality
ganglionic eminence	UBERON:0004023	68.43	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	67.37	gold quality
duodenum	UBERON:0002114	66.49	gold quality
right uterine tube	UBERON:0001302	66.39	gold quality
substantia nigra	UBERON:0002038	65.96	gold quality
monocyte	CL:0000576	65.25	gold quality
amygdala	UBERON:0001876	65.17	gold quality
putamen	UBERON:0001874	65.14	gold quality
leukocyte	CL:0000738	65.10	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	64.93	gold quality
bone marrow cell	CL:0002092	64.82	silver quality
hypothalamus	UBERON:0001898	64.67	gold quality
caudate nucleus	UBERON:0001873	64.54	gold quality
skeletal muscle tissue	UBERON:0001134	64.42	gold quality
islet of Langerhans	UBERON:0000006	64.09	gold quality
nucleus accumbens	UBERON:0001882	63.29	gold quality
anterior cingulate cortex	UBERON:0009835	63.17	gold quality
fallopian tube	UBERON:0003889	63.10	gold quality
granulocyte	CL:0000094	62.53	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	61.63	gold quality
Ammon’s horn	UBERON:0001954	61.57	gold quality
cerebral cortex	UBERON:0000956	61.38	gold quality
right frontal lobe	UBERON:0002810	61.32	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.60

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.