PDCD6IP-DT

Summary

PDCD6IP-DT (PDCD6IP divergent transcript, HGNC:55244) is a long non-coding RNA gene on chromosome 3p22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55244
Approved symbol	PDCD6IP-DT
Name	PDCD6IP divergent transcript
Location	3p22.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-10C24.1
Ensembl gene	ENSG00000271643
Ensembl biotype	lncRNA
Entrez	105377023
RNAcentral	URS00026A2103 — lncRNA, 4722 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000604982, ENST00000747835, ENST00000747836, ENST00000747837, ENST00000747838, ENST00000747839, ENST00000747840

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000604982 — 2 exons

Exon	Start	End
ENSE00003678366	33793644	33798022
ENSE00003833527	33798395	33798539

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 83.08.

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.08	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.29	gold quality
bone marrow cell	CL:0002092	70.29	silver quality
endometrium	UBERON:0001295	69.73	gold quality
rectum	UBERON:0001052	69.09	gold quality
lower esophagus mucosa	UBERON:0035834	68.86	gold quality
calcaneal tendon	UBERON:0003701	68.71	gold quality
esophagus mucosa	UBERON:0002469	68.38	gold quality
islet of Langerhans	UBERON:0000006	67.56	gold quality
minor salivary gland	UBERON:0001830	66.58	gold quality
saliva-secreting gland	UBERON:0001044	66.47	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	65.87	gold quality
stromal cell of endometrium	CL:0002255	65.68	gold quality
mucosa of transverse colon	UBERON:0004991	65.56	gold quality
pancreas	UBERON:0001264	65.51	gold quality
placenta	UBERON:0001987	65.42	gold quality
cortical plate	UBERON:0005343	65.36	gold quality
metanephros cortex	UBERON:0010533	65.35	gold quality
duodenum	UBERON:0002114	64.75	gold quality
esophagus	UBERON:0001043	64.66	gold quality
body of pancreas	UBERON:0001150	64.40	gold quality
smooth muscle tissue	UBERON:0001135	63.95	gold quality
tonsil	UBERON:0002372	63.89	gold quality
tibial artery	UBERON:0007610	63.66	gold quality
popliteal artery	UBERON:0002250	63.64	gold quality
descending thoracic aorta	UBERON:0002345	63.63	gold quality
right lobe of thyroid gland	UBERON:0001119	63.52	gold quality
thyroid gland	UBERON:0002046	63.48	gold quality
cortex of kidney	UBERON:0001225	63.43	gold quality
kidney	UBERON:0002113	63.35	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.49

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.