PDE7B
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Summary
PDE7B (phosphodiesterase 7B, HGNC:8792) is a protein-coding gene on chromosome 6q23.3, encoding 3’,5’-cyclic-AMP phosphodiesterase 7B (Q9NP56). Hydrolyzes the second messenger cAMP, which is a key regulator of many important physiological processes.
The 3’,5’-cyclic nucleotides cAMP and cGMP function as second messengers in a wide variety of signal transduction pathways. 3’,5’-cyclic nucleotide phosphodiesterases (PDEs) catalyze the hydrolysis of cAMP and cGMP to the corresponding 5’-monophosphates and provide a mechanism to downregulate cAMP and cGMP signaling. This gene encodes a cAMP-specific phosphodiesterase, a member of the cyclic nucleotide phosphodiesterase family.
Source: NCBI Gene 27115 — RefSeq curated summary.
At a glance
- GWAS associations: 28
- Clinical variants (ClinVar): 64 total
- Druggable target: yes — 3 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_018945
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:8792 |
| Approved symbol | PDE7B |
| Name | phosphodiesterase 7B |
| Location | 6q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000171408 |
| Ensembl biotype | protein_coding |
| OMIM | 604645 |
| Entrez | 27115 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000308191, ENST00000446774, ENST00000615259
RefSeq mRNA: 1 — MANE Select: NM_018945
NM_018945
CCDS: CCDS5175
Canonical transcript exons
ENST00000308191 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001124631 | 136187036 | 136187116 |
| ENSE00001124639 | 136181227 | 136181323 |
| ENSE00001124644 | 136178997 | 136179141 |
| ENSE00001124649 | 136173797 | 136173888 |
| ENSE00001124656 | 136155627 | 136155758 |
| ENSE00001124667 | 136151160 | 136151255 |
| ENSE00001124674 | 136149087 | 136149150 |
| ENSE00001124680 | 136147351 | 136147502 |
| ENSE00001124687 | 136108731 | 136108814 |
| ENSE00001365942 | 135947464 | 135947524 |
| ENSE00001445635 | 135851701 | 135852019 |
| ENSE00001904471 | 136191614 | 136195574 |
| ENSE00002097427 | 136154075 | 136154175 |
Expression profiles
Bgee: expression breadth ubiquitous, 233 present calls, max score 88.41.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 11.8292 / max 371.0441, expressed in 1132 samples.
FANTOM5 promoters (14 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 69938 | 3.7639 | 804 |
| 69939 | 3.6656 | 818 |
| 69947 | 1.3438 | 502 |
| 69937 | 0.7412 | 354 |
| 69948 | 0.5943 | 345 |
| 69935 | 0.5656 | 285 |
| 69949 | 0.2842 | 144 |
| 69943 | 0.1956 | 109 |
| 69936 | 0.1558 | 81 |
| 69946 | 0.1477 | 88 |
Top tissues by expression
276 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| germinal epithelium of ovary | UBERON:0001304 | 88.41 | gold quality |
| calcaneal tendon | UBERON:0003701 | 86.73 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 86.57 | gold quality |
| nucleus accumbens | UBERON:0001882 | 85.54 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 85.30 | gold quality |
| buccal mucosa cell | CL:0002336 | 85.12 | silver quality |
| tibia | UBERON:0000979 | 85.06 | gold quality |
| caudate nucleus | UBERON:0001873 | 84.22 | gold quality |
| putamen | UBERON:0001874 | 83.88 | gold quality |
| endothelial cell | CL:0000115 | 83.83 | silver quality |
| body of tongue | UBERON:0011876 | 82.95 | gold quality |
| saphenous vein | UBERON:0007318 | 82.94 | gold quality |
| vena cava | UBERON:0004087 | 82.88 | gold quality |
| occipital lobe | UBERON:0002021 | 82.78 | gold quality |
| primary visual cortex | UBERON:0002436 | 82.77 | gold quality |
| ventral tegmental area | UBERON:0002691 | 82.62 | gold quality |
| seminal vesicle | UBERON:0000998 | 82.46 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 82.23 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 82.22 | gold quality |
| left ovary | UBERON:0002119 | 82.21 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 82.13 | gold quality |
| cardia of stomach | UBERON:0001162 | 82.05 | gold quality |
| stromal cell of endometrium | CL:0002255 | 81.91 | gold quality |
| parietal pleura | UBERON:0002400 | 81.77 | gold quality |
| superior surface of tongue | UBERON:0007371 | 81.49 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 81.42 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 81.28 | gold quality |
| ovary | UBERON:0000992 | 81.12 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 81.09 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 81.00 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-30 | yes | 509.89 |
| E-CURD-119 | yes | 17.12 |
| E-HCAD-35 | yes | 8.81 |
| E-ANND-3 | yes | 5.74 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): GATA3
miRNA regulators (miRDB)
217 targeting PDE7B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-6740-5P | 100.00 | 65.64 | 932 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-3617-3P | 99.98 | 67.86 | 918 |
Literature-anchored findings (GeneRIF, showing 12)
- higher levels than in normal B-cell of PDE7B are found in chronic lymphocytic leukemia (PMID:19033455)
- As a first exploitation of this unique cohort, we identify three novel candidate dyslexia genes, ZNF280D and TCF12 at 15q21, and PDE7B at 6q23.3, by molecular mapping of the familial translocation with the 15q21 breakpoint. (PMID:20798984)
- High PDE7B is associated with chronic lymphocytic leukemia. (PMID:21120911)
- PDE7B mRNA expression is obviously higher in mantle cell lymphoma patients compared with normal controls and significantly correlates with unfavorable cytogenetic characteristics. (PMID:21362230)
- Genetic variation in the phosphodiesterase 7B is associated with bioavailability of testosterone enanthate. (PMID:21383644)
- The low frequency of this 5’ untranslated region variant indicates that it does not explain the higher PDE7B expression in patients with chronic lymphocytic leukemia (CLL) but it has the potential to influence other settings that involve a role for PDE7B. (PMID:21796143)
- higher expression of PDE7B might be a novel unfavorable prognostic indicator in MCL, which possess important clinical significance. (PMID:23453122)
- PDE7B polymorphisms were not associated with schizophrenia risk. (PMID:27092952)
- both low miR-200c and high PDE7B expression were correlated with poor survival of breast cancer patients. Our study supports a critical role of miR-200c/PDE7B relationship in triple-negative breast cancer tumorigenesis. (PMID:30209363)
- We have identified three novel loci (PDE7B, UBL3, and a new independent marker in CDKN2B-AS1) associated with BRCAX, and replicated previously reported SNPs (24 of 92) and moderate/high-penetrance (seven of 23) genes for Korean BRCAX. For the novel candidate loci, evidence supported their roles in regulatory function (PMID:30323354)
- The Prognostic Significance of PDE7B in Cytogenetically Normal Acute Myeloid Leukemia. (PMID:31740742)
- Methylation-regulated tumor suppressor gene PDE7B promotes HCC invasion and metastasis through the PI3K/AKT signaling pathway. (PMID:38778317)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Pde7b | ENSMUSG00000019990 |
| rattus_norvegicus | Pde7b | ENSRNOG00000013436 |
| drosophila_melanogaster | Pde11 | FBGN0085370 |
| drosophila_melanogaster | Pde8 | FBGN0266377 |
| caenorhabditis_elegans | WBGENE00008443 | |
| caenorhabditis_elegans | pde-6 | WBGENE00022389 |
Paralogs (20): PDE4A (ENSG00000065989), PDE8A (ENSG00000073417), PDE6C (ENSG00000095464), PDE4C (ENSG00000105650), PDE10A (ENSG00000112541), PDE8B (ENSG00000113231), PDE4D (ENSG00000113448), PDE1A (ENSG00000115252), PDE1B (ENSG00000123360), PDE11A (ENSG00000128655), PDE6A (ENSG00000132915), PDE6B (ENSG00000133256), PDE5A (ENSG00000138735), PDE3B (ENSG00000152270), PDE1C (ENSG00000154678), PDE9A (ENSG00000160191), PDE3A (ENSG00000172572), PDE4B (ENSG00000184588), PDE2A (ENSG00000186642), PDE7A (ENSG00000205268)
Protein
Protein identifiers
3’,5’-cyclic-AMP phosphodiesterase 7B — Q9NP56 (reviewed: Q9NP56)
Alternative names: cAMP-specific phosphodiesterase 7B
All UniProt accessions (3): A1E5M1, Q9NP56, H0Y689
UniProt curated annotations — full annotation on UniProt →
Function. Hydrolyzes the second messenger cAMP, which is a key regulator of many important physiological processes. May be involved in the control of cAMP-mediated neural activity and cAMP metabolism in the brain.
Tissue specificity. Highly expressed in brain. Also expressed in heart, liver, skeletal muscle and pancreas.
Activity regulation. Inhibited by dipyridamole, IBMX and SCH 51866. Insensitive to zaprinast, rolipram, and milrinone.
Cofactor. Binds 2 divalent metal cations per subunit. Site 1 may preferentially bind zinc ions, while site 2 has a preference for magnesium and/or manganese ions.
Domain organisation. Composed of a C-terminal catalytic domain containing two putative divalent metal sites and an N-terminal regulatory domain.
Pathway. Purine metabolism; 3’,5’-cyclic AMP degradation; AMP from 3’,5’-cyclic AMP: step 1/1.
Similarity. Belongs to the cyclic nucleotide phosphodiesterase family. PDE7 subfamily.
RefSeq proteins (1): NP_061818* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002073 | PDEase_catalytic_dom | Domain |
| IPR003607 | HD/PDEase_dom | Domain |
| IPR023088 | PDEase | Family |
| IPR023174 | PDEase_CS | Conserved_site |
| IPR036971 | PDEase_catalytic_dom_sf | Homologous_superfamily |
Pfam: PF00233
Enzyme classification (BRENDA):
- EC 3.1.4.53 — 3’,5’-cyclic-AMP phosphodiesterase (BRENDA: 28 organisms, 62 substrates, 307 inhibitors, 60 Km, 12 kcat entries)
Substrate kinetics (BRENDA)
6 substrates with measured Km, best-characterized 6. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ADENOSINE 3’,5’-CYCLIC PHOSPHATE | — | 34 |
| 3’,5’-CAMP | 0.0003–0.5 | 13 |
| CAMP | 0.0001–0.191 | 9 |
| CGMP | 0.24–0.427 | 2 |
| 3’,5’-CGMP | 1.6 | 1 |
| GUANOSINE 3’,5’-CYCLIC PHOSPHATE | 0.124 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- 3’,5’-cyclic AMP + H2O = AMP + H(+) (RHEA:25277)
UniProt features (11 total): binding site 5, chain 1, domain 1, modified residue 1, region of interest 1, compositionally biased region 1, active site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NP56-F1 | 79.84 | 0.71 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 173 (proton donor)
Ligand- & substrate-binding residues (5): 177; 213; 214; 214; 323
Post-translational modifications (1): 426
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-418555 | G alpha (s) signalling events |
MSigDB gene sets: 206 (showing top):
TAATAAT_MIR126, AAGCCAT_MIR135A_MIR135B, GOBP_CARBOHYDRATE_DERIVATIVE_CATABOLIC_PROCESS, TATTATA_MIR374, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_CYCLIC_NUCLEOTIDE_METABOLIC_PROCESS, CACCAGC_MIR138, GOBP_CYCLIC_NUCLEOTIDE_CATABOLIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_CELL_CELL_SIGNALING, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, RIGGI_EWING_SARCOMA_PROGENITOR_DN, GOBP_ORGANOPHOSPHATE_CATABOLIC_PROCESS, GOBP_SYNAPTIC_SIGNALING
GO Biological Process (4): cAMP catabolic process (GO:0006198), signal transduction (GO:0007165), chemical synaptic transmission (GO:0007268), negative regulation of cAMP/PKA signal transduction (GO:0141162)
GO Molecular Function (7): 3’,5’-cyclic-AMP phosphodiesterase activity (GO:0004115), metal ion binding (GO:0046872), 3’,5’-cyclic-GMP phosphodiesterase activity (GO:0047555), cyclic-nucleotide phosphodiesterase activity (GO:0004112), 3’,5’-cyclic-nucleotide phosphodiesterase activity (GO:0004114), phosphoric diester hydrolase activity (GO:0008081), hydrolase activity (GO:0016787)
GO Cellular Component (2): cytosol (GO:0005829), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| GPCR downstream signalling | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| 3’,5’-cyclic-nucleotide phosphodiesterase activity | 2 |
| purine ribonucleotide catabolic process | 1 |
| cyclic nucleotide catabolic process | 1 |
| cAMP metabolic process | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| anterograde trans-synaptic signaling | 1 |
| cAMP/PKA signal transduction | 1 |
| regulation of cAMP/PKA signal transduction | 1 |
| negative regulation of intracellular signal transduction | 1 |
| cation binding | 1 |
| phosphoric diester hydrolase activity | 1 |
| cyclic-nucleotide phosphodiesterase activity | 1 |
| phosphoric ester hydrolase activity | 1 |
| catalytic activity | 1 |
| cytoplasm | 1 |
| cellular anatomical structure | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
876 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PDE7B | ALDH7A1 | P49419 | 874 |
| PDE7B | EXOC3L2 | Q2M3D2 | 678 |
| PDE7B | GUCY1B1 | Q02153 | 486 |
| PDE7B | ADCY7 | P51828 | 484 |
| PDE7B | AHI1 | Q8N157 | 482 |
| PDE7B | RAPGEF4 | Q8WZA2 | 474 |
| PDE7B | ADCY8 | P40145 | 462 |
| PDE7B | ALDH8A1 | Q9H2A2 | 453 |
| PDE7B | MAP3K5 | Q99683 | 448 |
| PDE7B | SEPTIN9 | Q9UHD8 | 427 |
| PDE7B | HBS1L | Q9Y450 | 419 |
| PDE7B | AK8 | Q96MA6 | 417 |
| PDE7B | PDE6D | O43924 | 412 |
| PDE7B | SLC12A4 | Q9UP95 | 410 |
| PDE7B | AKAP7 | O43687 | 406 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SRPK2 | PDE7B | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 |
| PDE7B | YWHAQ | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (11): ZNHIT6 (Affinity Capture-MS), YWHAQ (Affinity Capture-MS), HBB (Affinity Capture-MS), YWHAB (Affinity Capture-MS), RUFY3 (Affinity Capture-MS), YWHAZ (Affinity Capture-MS), YWHAG (Affinity Capture-MS), YWHAE (Affinity Capture-MS), PDE7B (Affinity Capture-MS), PDE7B (Affinity Capture-RNA), PDE7B (Biochemical Activity)
ESM2 similar proteins: A4IF87, A4IJ06, A6H611, A9JRL3, E1C3P4, G1SPE9, O08593, O15228, O54735, O88910, P14100, P54750, P70453, P98192, Q01061, Q01064, Q01065, Q01066, Q01992, Q07832, Q13946, Q14123, Q28156, Q2KIX2, Q2TBA3, Q32NJ2, Q32NM1, Q4R678, Q4U2V3, Q61481, Q62673, Q641K1, Q64395, Q69ZK0, Q6NTL4, Q6ZMV9, Q7Z6J4, Q8CA95, Q8TCU6, Q96EN8
Diamond homologs: A0A077YBL0, B0G0Y8, B3LVW5, B3P3K2, B4JXX2, B4K9L4, B4LVU6, B4NAL6, B4PSS5, B4QZU1, B7YZV4, E9Q4S1, H2QL32, O00408, O08593, O18696, O60658, O70628, O76083, O88502, O89084, O95263, P0C1Q2, P12252, P14099, P14100, P14270, P14644, P14646, P16586, P23439, P23440, P27815, P30645, P33726, P35913, P51160, P54748, P54750, P70453
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
64 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 51 |
| Likely benign | 1 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2721 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:135947463:GA:G | acceptor_gain | 1.0000 |
| 6:135947463:GAGGT:G | acceptor_gain | 1.0000 |
| 6:136108815:G:GG | donor_gain | 1.0000 |
| 6:136147501:GG:G | donor_gain | 1.0000 |
| 6:136147502:GG:G | donor_gain | 1.0000 |
| 6:136147503:G:GA | donor_loss | 1.0000 |
| 6:136147503:G:GG | donor_gain | 1.0000 |
| 6:136147504:T:A | donor_loss | 1.0000 |
| 6:136151253:TAGGT:T | donor_loss | 1.0000 |
| 6:136151254:AGGT:A | donor_loss | 1.0000 |
| 6:136151256:G:GA | donor_loss | 1.0000 |
| 6:136151256:G:GG | donor_gain | 1.0000 |
| 6:136151257:T:G | donor_loss | 1.0000 |
| 6:136154071:CCA:C | acceptor_loss | 1.0000 |
| 6:136154072:CAGTC:C | acceptor_loss | 1.0000 |
| 6:136154073:A:AG | acceptor_gain | 1.0000 |
| 6:136154074:G:A | acceptor_loss | 1.0000 |
| 6:136154074:G:GC | acceptor_gain | 1.0000 |
| 6:136154074:GT:G | acceptor_gain | 1.0000 |
| 6:136154074:GTC:G | acceptor_gain | 1.0000 |
| 6:136154074:GTCA:G | acceptor_gain | 1.0000 |
| 6:136154074:GTCAT:G | acceptor_gain | 1.0000 |
| 6:136154172:AAAGG:A | donor_loss | 1.0000 |
| 6:136154173:AAGGT:A | donor_loss | 1.0000 |
| 6:136154174:AGG:A | donor_loss | 1.0000 |
| 6:136154177:T:G | donor_loss | 1.0000 |
| 6:136155625:A:AG | acceptor_gain | 1.0000 |
| 6:136155626:G:GG | acceptor_gain | 1.0000 |
| 6:136155755:TCAGG:T | donor_loss | 1.0000 |
| 6:136155756:CAG:C | donor_loss | 1.0000 |
AlphaMissense
3034 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:136154113:C:G | H173D | 1.000 |
| 6:136155688:A:T | D214V | 1.000 |
| 6:136181264:G:C | R329T | 1.000 |
| 6:136181265:A:C | R329S | 1.000 |
| 6:136181265:A:T | R329S | 1.000 |
| 6:136181287:T:A | W337R | 1.000 |
| 6:136181287:T:C | W337R | 1.000 |
| 6:136149111:T:A | W115R | 0.999 |
| 6:136149111:T:C | W115R | 0.999 |
| 6:136149113:G:C | W115C | 0.999 |
| 6:136149113:G:T | W115C | 0.999 |
| 6:136154110:T:G | Y172D | 0.999 |
| 6:136154115:C:A | H173Q | 0.999 |
| 6:136154115:C:G | H173Q | 0.999 |
| 6:136154125:C:G | H177D | 0.999 |
| 6:136154129:C:A | A178E | 0.999 |
| 6:136154131:G:C | A179P | 0.999 |
| 6:136154132:C:A | A179D | 0.999 |
| 6:136154146:G:C | A184P | 0.999 |
| 6:136155676:C:A | A210E | 0.999 |
| 6:136155684:C:G | H213D | 0.999 |
| 6:136155688:A:C | D214A | 0.999 |
| 6:136155688:A:G | D214G | 0.999 |
| 6:136155689:T:A | D214E | 0.999 |
| 6:136155689:T:G | D214E | 0.999 |
| 6:136155696:C:G | H217D | 0.999 |
| 6:136155698:C:A | H217Q | 0.999 |
| 6:136155698:C:G | H217Q | 0.999 |
| 6:136155702:G:T | G219W | 0.999 |
| 6:136155703:G:A | G219E | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000003348 (6:136077396 G>A), RS1000003911 (6:136084698 A>G), RS1000025198 (6:136019105 T>C), RS1000025488 (6:135929861 C>G), RS1000025977 (6:135873456 T>C), RS1000032930 (6:135887748 G>A), RS1000036261 (6:135862963 G>A), RS1000036329 (6:136100949 A>T), RS1000056681 (6:135930166 C>T), RS1000062893 (6:135868962 CAT>C), RS1000092470 (6:136189587 T>A,C), RS1000094573 (6:136053939 T>C), RS1000105226 (6:135881670 G>A,T), RS1000107672 (6:136099279 G>A), RS1000108607 (6:136121707 T>C)
Disease associations
OMIM: gene MIM:604645 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): prostate cancer (MONDO:0008315)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
28 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000703_4 | Phosphorus levels | 3.000000e-12 |
| GCST001915_16 | Alzheimer’s disease (cognitive decline) | 1.000000e-08 |
| GCST002168_6 | Intraocular pressure | 2.000000e-06 |
| GCST005580_18 | Intraocular pressure | 2.000000e-14 |
| GCST005580_41 | Intraocular pressure | 6.000000e-13 |
| GCST005851_6 | Delirium | 1.000000e-07 |
| GCST005926_2 | Peak cortisol response to low dose short synacthen test in corticosteroid treated asthma | 6.000000e-07 |
| GCST006065_17 | Glaucoma (primary open-angle) | 1.000000e-14 |
| GCST006066_3 | Glaucoma (primary open-angle) | 7.000000e-06 |
| GCST006288_467 | Heel bone mineral density | 5.000000e-06 |
| GCST006288_561 | Heel bone mineral density | 3.000000e-11 |
| GCST006394_9 | Intraocular pressure | 4.000000e-16 |
| GCST006395_46 | Glaucoma | 8.000000e-08 |
| GCST006412_60 | Intraocular pressure | 4.000000e-19 |
| GCST006719_2 | BRCA1/2-negative high-risk breast cancer | 1.000000e-06 |
| GCST006979_397 | Heel bone mineral density | 1.000000e-16 |
| GCST006979_398 | Heel bone mineral density | 2.000000e-11 |
| GCST006993_9 | Hippocampal volume in Alzheimer’s disease dementia | 2.000000e-08 |
| GCST008174_3 | Aspartate aminotransferase levels | 3.000000e-08 |
| GCST008256_4 | Diverticulitis | 1.000000e-06 |
| GCST008467_11 | Aspartate aminotransferase levels in non-alcoholic fatty liver disease | 9.000000e-06 |
| GCST009722_11 | Glaucoma (multi-trait analysis) | 7.000000e-17 |
| GCST009725_19 | Intraocular pressure | 2.000000e-16 |
| GCST010083_125 | Hemoglobin levels | 1.000000e-11 |
| GCST011438_20 | Glaucoma (primary open-angle) | 4.000000e-09 |
| GCST011439_9 | Glaucoma (primary open-angle) | 4.000000e-08 |
| GCST011639_4 | Cirrhosis (alcohol related) | 1.000000e-06 |
| GCST90011770_6 | Glaucoma (primary open-angle) | 2.000000e-29 |
EFO canonical traits (9, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004861 | phosphorus measurement |
| EFO:0004695 | intraocular pressure measurement |
| EFO:0005843 | cortisol measurement |
| EFO:0009175 | response to synacthen |
| EFO:0009270 | heel bone mineral density |
| EFO:0009443 | BRCAX breast cancer |
| EFO:0005035 | hippocampal volume |
| EFO:0004736 | aspartate aminotransferase measurement |
| EFO:0004509 | hemoglobin measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (3): CHEMBL2111411 (PROTEIN FAMILY), CHEMBL2363066 (PROTEIN FAMILY), CHEMBL4716 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
3 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 72,835 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1520 | VARDENAFIL | 4 | 21,078 |
| CHEMBL932 | DIPYRIDAMOLE | 4 | 51,743 |
| CHEMBL3770459 | LENRISPODUN PHOSPHATE | 1 | 14 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Phosphodiesterases, 3’,5’-cyclic nucleotide (PDEs)
Most potent curated ligand interactions (3 total), top 3:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| dipyridamole | Inhibition | 6.0 | pIC50 |
| SCH51866 | Inhibition | 5.8 | pIC50 |
| BRL50481 | Inhibition | 4.9 | pIC50 |
Binding affinities (BindingDB)
11 measured of 16 human assays (16 total across all organisms); most potent 11 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 6-(4-amino-2-methoxyphenyl)-3-cyclohexyl-1-methyl-3,5-dihydropyrazolo[4,3-c]pyridin-1-ium-4-one | IC50 | 1.3 nM | US-8637528: Use of PDE7 inhibitors for the treatment of movement disorders |
| US8637528, OM056 | IC50 | 5.67 nM | US-8637528: Use of PDE7 inhibitors for the treatment of movement disorders |
| 8-chloro-5-propoxyspiro[1,3-dihydroquinazoline-4,1’-cyclohexane]-2-one | IC50 | 51.8 nM | US-8637528: Use of PDE7 inhibitors for the treatment of movement disorders |
| N-[4-(5-cyclohexylimino-4-methyl-1,3,4-thiadiazol-2-yl)phenyl]acetamide | IC50 | 140 nM | US-8637528: Use of PDE7 inhibitors for the treatment of movement disorders |
| 2-{2-ethoxy-5-[(4-ethylpiperazine-1-)sulfonyl]phenyl}-5-methyl-7-propyl-3H,4H-imidazo[1,5-a][1,2,4]triazin-4-one | IC50 | 300 nM | |
| CHEMBL3359649 | IC50 | 1110 nM | |
| SILDENAFIL CITRATE | IC50 | 1500 nM | |
| (6R,12aR)-6-(1,3-benzodioxol-5-yl)-2-methyl-2,3,6,7,12,12a-hexahydropyrazino[1,2,1,6]pyrido[3,4-b]indole-1,4-dione | IC50 | 50000 nM | |
| 3-(cyclopentyloxy)-N-(3,5-dichloropyridin-4-yl)-4-methoxybenzamide | IC50 | 68000 nM | |
| Ariflo | IC50 | 87000 nM | |
| (E)-{1-[3-(cyclopentyloxy)-4-methoxyphenyl]ethylidene}amino carbamate | IC50 | 190000 nM |
ChEMBL bioactivities
482 potent at pChembl≥5 of 491 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.00 | IC50 | 0.1 | nM | CHEMBL5081214 |
| 9.90 | IC50 | 0.1259 | nM | CHEMBL5080391 |
| 9.80 | IC50 | 0.1585 | nM | CHEMBL5087564 |
| 9.60 | IC50 | 0.2512 | nM | CHEMBL5094110 |
| 9.50 | IC50 | 0.3162 | nM | CHEMBL5086895 |
| 9.50 | IC50 | 0.3162 | nM | CHEMBL5076558 |
| 9.00 | IC50 | 1 | nM | CHEMBL5078680 |
| 9.00 | IC50 | 1 | nM | CHEMBL5088742 |
| 9.00 | IC50 | 1 | nM | CHEMBL3354181 |
| 8.77 | IC50 | 1.7 | nM | CHEMBL5180503 |
| 8.48 | IC50 | 3.3 | nM | CHEMBL3403346 |
| 8.32 | IC50 | 4.8 | nM | CHEMBL3924897 |
| 8.26 | IC50 | 5.5 | nM | CHEMBL5625053 |
| 8.21 | IC50 | 6.1 | nM | CHEMBL5630856 |
| 8.10 | IC50 | 8 | nM | CHEMBL2019112 |
| 8.03 | IC50 | 9.27 | nM | CHEMBL3670399 |
| 8.00 | IC50 | 10 | nM | CHEMBL5879134 |
| 8.00 | IC50 | 10 | nM | CHEMBL5858692 |
| 7.96 | IC50 | 11 | nM | CHEMBL2171422 |
| 7.89 | IC50 | 13 | nM | CHEMBL6170526 |
| 7.85 | IC50 | 14 | nM | CHEMBL5630984 |
| 7.85 | IC50 | 14 | nM | CHEMBL183465 |
| 7.80 | IC50 | 16 | nM | CHEMBL182703 |
| 7.77 | IC50 | 17 | nM | CHEMBL2019104 |
| 7.77 | IC50 | 17 | nM | CHEMBL5196667 |
| 7.73 | IC50 | 18.8 | nM | CHEMBL5890900 |
| 7.72 | IC50 | 19 | nM | CHEMBL2171423 |
| 7.70 | IC50 | 20 | nM | CHEMBL5624926 |
| 7.64 | IC50 | 23 | nM | CHEMBL5625140 |
| 7.51 | IC50 | 31 | nM | CHEMBL2019021 |
| 7.43 | IC50 | 37 | nM | CHEMBL3646900 |
| 7.41 | IC50 | 39 | nM | CHEMBL3646893 |
| 7.38 | IC50 | 41.3 | nM | CHEMBL4128481 |
| 7.37 | IC50 | 43 | nM | CHEMBL2171421 |
| 7.34 | IC50 | 46 | nM | CHEMBL3646899 |
| 7.27 | IC50 | 54 | nM | CHEMBL6166903 |
| 7.26 | IC50 | 55 | nM | CHEMBL183965 |
| 7.26 | IC50 | 55 | nM | CHEMBL5836044 |
| 7.26 | IC50 | 55 | nM | CHEMBL5814196 |
| 7.26 | IC50 | 55 | nM | CHEMBL5844793 |
| 7.26 | IC50 | 55 | nM | CHEMBL5809291 |
| 7.26 | IC50 | 55 | nM | CHEMBL5854016 |
| 7.26 | IC50 | 55 | nM | CHEMBL5827612 |
| 7.26 | IC50 | 55 | nM | CHEMBL5886081 |
| 7.26 | IC50 | 55 | nM | CHEMBL5899802 |
| 7.26 | IC50 | 55 | nM | CHEMBL5804823 |
| 7.26 | IC50 | 55 | nM | CHEMBL5932910 |
| 7.26 | IC50 | 55 | nM | CHEMBL6053963 |
| 7.26 | IC50 | 55 | nM | CHEMBL5876453 |
| 7.26 | IC50 | 55 | nM | CHEMBL5833606 |
PubChem BioAssay actives
97 with measured affinity, of 236 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| [(1S)-1-[3-(cyclopropylmethoxy)-4-(difluoromethoxy)phenyl]-2-(3,5-dichloro-1-oxidopyridin-1-ium-4-yl)ethyl] 3-[[2-[[(3R)-1-azabicyclo[2.2.2]octan-3-yl]oxy]-2-oxo-1-phenylethyl]sulfamoyl]benzoate | 1812119: Inhibition of PDE4 in human U-937 cells assessed as reduction in cAMP level by LANCE cAMP Assay | ic50 | 0.0001 | uM |
| [(1S)-1-[3-(cyclopropylmethoxy)-4-(difluoromethoxy)phenyl]-2-(3,5-dichloro-1-oxidopyridin-1-ium-4-yl)ethyl] 3-[[N-[[(3R)-1-azabicyclo[2.2.2]octan-3-yl]oxycarbonyl]anilino]methyl]benzoate | 1812119: Inhibition of PDE4 in human U-937 cells assessed as reduction in cAMP level by LANCE cAMP Assay | ic50 | 0.0001 | uM |
| [(1S)-2-(3,5-dichloro-1-oxidopyridin-1-ium-4-yl)-1-(3,4-dimethoxyphenyl)ethyl] 3-[[2-[[(3R)-1-azabicyclo[2.2.2]octan-3-yl]oxy]-2-oxo-1-phenylethyl]amino]benzoate | 1812119: Inhibition of PDE4 in human U-937 cells assessed as reduction in cAMP level by LANCE cAMP Assay | ic50 | 0.0002 | uM |
| [(1S)-2-(3,5-dichloro-1-oxidopyridin-1-ium-4-yl)-1-(3,4-dimethoxyphenyl)ethyl] 3-[[[2-[[(3R)-1-azabicyclo[2.2.2]octan-3-yl]oxy]-2-oxo-1-phenylethyl]amino]methyl]benzoate | 1812119: Inhibition of PDE4 in human U-937 cells assessed as reduction in cAMP level by LANCE cAMP Assay | ic50 | 0.0003 | uM |
| [(1S)-2-(3,5-dichloro-1-oxidopyridin-1-ium-4-yl)-1-(3,4-dimethoxyphenyl)ethyl] 3-[[2-[[(3R)-1-azabicyclo[2.2.2]octan-3-yl]oxy]-2-oxo-1-phenylethyl]sulfamoyl]benzoate | 1812119: Inhibition of PDE4 in human U-937 cells assessed as reduction in cAMP level by LANCE cAMP Assay | ic50 | 0.0003 | uM |
| [(1S)-1-[3-(cyclopropylmethoxy)-4-(difluoromethoxy)phenyl]-2-(3,5-dichloro-1-oxidopyridin-1-ium-4-yl)ethyl] 3-[[[2-[[(3R)-1-azabicyclo[2.2.2]octan-3-yl]oxy]-2-oxo-1-phenylethyl]amino]methyl]benzoate | 1812119: Inhibition of PDE4 in human U-937 cells assessed as reduction in cAMP level by LANCE cAMP Assay | ic50 | 0.0003 | uM |
| [(1S)-2-(3,5-dichloro-1-oxidopyridin-1-ium-4-yl)-1-(3,4-dimethoxyphenyl)ethyl] 3-[[N-[[(3R)-1-azabicyclo[2.2.2]octan-3-yl]oxycarbonyl]anilino]methyl]benzoate | 1812119: Inhibition of PDE4 in human U-937 cells assessed as reduction in cAMP level by LANCE cAMP Assay | ic50 | 0.0010 | uM |
| [(1S)-1-[3-(cyclopropylmethoxy)-4-(difluoromethoxy)phenyl]-2-(3,5-dichloro-1-oxidopyridin-1-ium-4-yl)ethyl] 3-[[2-[[(3R)-1-azabicyclo[2.2.2]octan-3-yl]oxy]-2-oxo-1-phenylethyl]amino]benzoate | 1812119: Inhibition of PDE4 in human U-937 cells assessed as reduction in cAMP level by LANCE cAMP Assay | ic50 | 0.0010 | uM |
| 8-chloro-5-[(2-(111C)methyltetrazol-5-yl)methoxy]spiro[1,3-dihydroquinazoline-4,1’-cyclohexane]-2-one | 1924461: Inhibition of PDE7 (unknown origin) | ic50 | 0.0017 | uM |
| 3-ethyl-7-[1-(6-methylpyridine-2-carbonyl)pyrrolidin-3-yl]-2-(propan-2-ylamino)thieno[3,2-d]pyrimidin-4-one | 2131356: Inhibition of PDE7 (unknown origin) | ic50 | 0.0033 | uM |
| 2-[3-[(3,4-dimethoxyphenyl)methyl]-2,4-dioxo-1-(thian-4-yl)quinazolin-6-yl]oxyacetonitrile | 2131351: Inhibition of full length PDE7 (unknown origin) using FAM-cAMP as substrate by fluorescence based analysis | ic50 | 0.0055 | uM |
| 2-[3-[(3,4-dimethoxyphenyl)methyl]-2,4-dioxo-1-(1-oxothian-4-yl)quinazolin-6-yl]oxyacetonitrile | 2131351: Inhibition of full length PDE7 (unknown origin) using FAM-cAMP as substrate by fluorescence based analysis | ic50 | 0.0061 | uM |
| 6-[4-(4-acetylpiperazin-1-yl)-2-methoxyphenyl]-3-cyclohexyl-5H-[1,2]thiazolo[5,4-d]pyrimidin-4-one | 657348: Displacement of [3H]-cAMP from human recombinant PDE7B | ic50 | 0.0080 | uM |
| 3-[2,2-difluoro-5-(trifluoromethyl)cyclohexyl]-N-[(2,4-dimethoxyphenyl)methyl]-N-[(3,5-dimethoxyphenyl)methyl]triazolo[4,5-d]pyrimidin-7-amine | 2131351: Inhibition of full length PDE7 (unknown origin) using FAM-cAMP as substrate by fluorescence based analysis | ic50 | 0.0100 | uM |
| 2-[4-(4-aminopiperidin-1-yl)-2-methoxyphenyl]-5-cyclohexyl-7-methyl-3H-imidazo[4,5-d]pyridazin-4-one | 702752: Inhibition of cloned human recombinant PDE7B assessed as [3H]cAMP hydrolysis by radiometric assay | ic50 | 0.0110 | uM |
| 4-[2-(3,4-dimethylphenyl)-5-(4-methylpiperazin-1-yl)-4,5,6,7-tetrahydroindol-1-yl]-N-(4,6-dimethylpyrimidin-2-yl)benzenesulfonamide | 2131346: Inhibition of PDE7B (unknown origin) by 3H-cAMP scintillation proximity assay | ic50 | 0.0140 | uM |
| 8-chloro-6-[4-(4-methylpiperazine-1-carbonyl)phenyl]spiro[1,3-dihydroquinazoline-4,1’-cyclohexane]-2-one | 2131361: Inhibition of recombinant PDE7 (unknown origin) expressed in Escherichia coli BL21 (DE3) using [3H]cAMP as substrate preincubated for 15 mins followed by compound addition and incubated for 1 hr by liquid scintillation method | ic50 | 0.0140 | uM |
| 8-chloro-6-phenylspiro[1,3-dihydroquinazoline-4,1’-cyclohexane]-2-one | 2131361: Inhibition of recombinant PDE7 (unknown origin) expressed in Escherichia coli BL21 (DE3) using [3H]cAMP as substrate preincubated for 15 mins followed by compound addition and incubated for 1 hr by liquid scintillation method | ic50 | 0.0160 | uM |
| 3-cyclohexyl-6-[4-(1,4-diazepan-1-yl)-2-methoxyphenyl]-5H-[1,2]thiazolo[5,4-d]pyrimidin-4-one | 657348: Displacement of [3H]-cAMP from human recombinant PDE7B | ic50 | 0.0170 | uM |
| 8-chloro-5-(2-(18F)fluoroethoxy)spiro[1,3-dihydroquinazoline-4,1’-cyclohexane]-2-one | 1924461: Inhibition of PDE7 (unknown origin) | ic50 | 0.0170 | uM |
| 5-cyclohexyl-2-[4-(1,4-diazepan-1-yl)-2-methoxyphenyl]-7-methyl-3H-imidazo[4,5-d]pyridazin-4-one | 702752: Inhibition of cloned human recombinant PDE7B assessed as [3H]cAMP hydrolysis by radiometric assay | ic50 | 0.0190 | uM |
| N-cyclopentyl-2-(3,4,5-trimethoxyphenyl)thieno[2,3-d]pyrimidin-4-amine | 2131351: Inhibition of full length PDE7 (unknown origin) using FAM-cAMP as substrate by fluorescence based analysis | ic50 | 0.0200 | uM |
| (4aS,8aR)-4-(3-chloro-4-methoxyphenyl)-2-[1-(morpholine-4-carbonyl)piperidin-4-yl]-4a,5,8,8a-tetrahydrophthalazin-1-one | 2131346: Inhibition of PDE7B (unknown origin) by 3H-cAMP scintillation proximity assay | ic50 | 0.0230 | uM |
| 6-(4-amino-2-methoxyphenyl)-3-cyclohexyl-5H-[1,2]thiazolo[5,4-d]pyrimidin-4-one | 657348: Displacement of [3H]-cAMP from human recombinant PDE7B | ic50 | 0.0310 | uM |
| 5-[[6-(1,3-difluoropropan-2-yloxy)-1-(1-formylpiperidin-4-yl)-2,4-dioxoquinazolin-3-yl]methyl]-2-phenylbenzonitrile | 2131355: Inhibition of PDE7 (unknown origin) by fluorescent based assay | ic50 | 0.0370 | uM |
| 4-[6-(1,3-difluoropropan-2-yloxy)-3-[(3,4-dimethoxyphenyl)methyl]-2,4-dioxoquinazolin-1-yl]piperidine-1-carbaldehyde | 2131355: Inhibition of PDE7 (unknown origin) by fluorescent based assay | ic50 | 0.0390 | uM |
| 7,8-dimethoxy-N-[(2S)-1-(5-methyl-1H-pyrazol-3-yl)propan-2-yl]quinazolin-4-amine | 1495737: Inhibition of full length recombinant human PDE7B using 3’,5’-[3H]cAMP as substrate after 30 mins by scintillation proximity assay | ic50 | 0.0413 | uM |
| 2-(4-amino-2-methoxyphenyl)-5-cyclohexyl-7-methyl-3H-imidazo[4,5-d]pyridazin-4-one | 702752: Inhibition of cloned human recombinant PDE7B assessed as [3H]cAMP hydrolysis by radiometric assay | ic50 | 0.0430 | uM |
| 4-[6-(1,3-difluoropropan-2-yloxy)-3-[[3-methoxy-4-(2-oxo-2-piperidin-1-ylethoxy)phenyl]methyl]-2,4-dioxoquinazolin-1-yl]piperidine-1-carbaldehyde | 2131355: Inhibition of PDE7 (unknown origin) by fluorescent based assay | ic50 | 0.0460 | uM |
| 8-chloro-5-(2-hydroxyethoxy)spiro[1,3-dihydroquinazoline-4,1’-cyclohexane]-2-one | 2131351: Inhibition of full length PDE7 (unknown origin) using FAM-cAMP as substrate by fluorescence based analysis | ic50 | 0.0550 | uM |
| 6,7-difluoro-1H-quinazoline-2,4-dithione | 2131351: Inhibition of full length PDE7 (unknown origin) using FAM-cAMP as substrate by fluorescence based analysis | ic50 | 0.0740 | uM |
| 2-(2,2-dimethylpropylsulfanyl)-3-phenylquinazolin-4-one | 2131351: Inhibition of full length PDE7 (unknown origin) using FAM-cAMP as substrate by fluorescence based analysis | ic50 | 0.1000 | uM |
| 3-(2,6-difluorophenyl)-8-methyl-2-methylsulfanylquinazolin-4-one | 2131351: Inhibition of full length PDE7 (unknown origin) using FAM-cAMP as substrate by fluorescence based analysis | ic50 | 0.1300 | uM |
| 8-chlorospiro[1,3-dihydroquinazoline-4,1’-cyclohexane]-2-one | 2131361: Inhibition of recombinant PDE7 (unknown origin) expressed in Escherichia coli BL21 (DE3) using [3H]cAMP as substrate preincubated for 15 mins followed by compound addition and incubated for 1 hr by liquid scintillation method | ic50 | 0.1700 | uM |
| (11R,15S)-5-anilino-8-methyl-4-[(4-pyridin-2-ylphenyl)methyl]-1,3,4,8,10-pentazatetracyclo[7.6.0.02,6.011,15]pentadeca-2,5,9-trien-7-one | 1281082: Inhibition of recombinant full lenght human PDE7B using fluorescent labeled cAMP as substrate after 15 mins by IMAP assay | ki | 0.3000 | uM |
| N-(2-pyrazin-2-yl-4,6-dihydrothieno[3,4-c]pyrazol-3-yl)naphthalene-1-carboxamide | 1994821: Inhibition of PDE (unknown origin) | ic50 | 0.3300 | uM |
| (11R,15S)-5-anilino-4-[[4-(6-fluoro-2-pyridinyl)phenyl]methyl]-8-methyl-1,3,4,8,10-pentazatetracyclo[7.6.0.02,6.011,15]pentadeca-2,5,9-trien-7-one;phosphoric acid | 1281082: Inhibition of recombinant full lenght human PDE7B using fluorescent labeled cAMP as substrate after 15 mins by IMAP assay | ki | 0.3600 | uM |
| 2,3-diphenyl-N-(pyridin-3-ylmethyl)-1,2,4-thiadiazol-5-imine | 2131355: Inhibition of PDE7 (unknown origin) by fluorescent based assay | ic50 | 0.3800 | uM |
| 3-(2,6-difluorophenyl)-2-methylsulfanylquinazolin-4-one | 2131351: Inhibition of full length PDE7 (unknown origin) using FAM-cAMP as substrate by fluorescence based analysis | ic50 | 0.5100 | uM |
| 3-phenyl-1H-quinazoline-2,4-dithione | 2131351: Inhibition of full length PDE7 (unknown origin) using FAM-cAMP as substrate by fluorescence based analysis | ic50 | 0.5500 | uM |
| 4-(2-chloro-4-nitrophenyl)sulfanylpyridine | 1166730: Inhibition of human recombinant PDE7B assessed as inhibition of hydrolysis of [3H]cAMP after 20 mins by scintillation proximity assay | ic50 | 0.6000 | uM |
| Dipyridamole | 2128853: Inhibition of PDE7 (unknown origin) | ic50 | 0.6000 | uM |
| N,N,2-trimethyl-5-nitrobenzenesulfonamide | 2131346: Inhibition of PDE7B (unknown origin) by 3H-cAMP scintillation proximity assay | ic50 | 0.6200 | uM |
| 2-propan-2-yl-4-[[4-[2-(2H-tetrazol-5-yl)phenyl]phenyl]methylsulfanyl]quinazoline | 737544: Inhibition of PDE7 catalytic domain (unknown origin) using [3H]-cAMP as substrate after 1 hr by scintillation proximity assay | ic50 | 0.7700 | uM |
| 3-[4-[(2-propan-2-ylquinazolin-4-yl)sulfanylmethyl]phenyl]benzoic acid | 737544: Inhibition of PDE7 catalytic domain (unknown origin) using [3H]-cAMP as substrate after 1 hr by scintillation proximity assay | ic50 | 0.8500 | uM |
| 2-propan-2-yl-4-[[4-[3-(2H-tetrazol-5-yl)phenyl]phenyl]methylsulfanyl]quinazoline | 737544: Inhibition of PDE7 catalytic domain (unknown origin) using [3H]-cAMP as substrate after 1 hr by scintillation proximity assay | ic50 | 0.8900 | uM |
| (11R,15S)-5-anilino-8-methyl-4-[(4-phenylphenyl)methyl]-1,3,4,8,10-pentazatetracyclo[7.6.0.02,6.011,15]pentadeca-2,5,9-trien-7-one | 1281082: Inhibition of recombinant full lenght human PDE7B using fluorescent labeled cAMP as substrate after 15 mins by IMAP assay | ki | 0.9100 | uM |
| 4-[4-[(2-propan-2-ylquinazolin-4-yl)sulfanylmethyl]phenyl]benzoic acid | 737544: Inhibition of PDE7 catalytic domain (unknown origin) using [3H]-cAMP as substrate after 1 hr by scintillation proximity assay | ic50 | 0.9300 | uM |
| [(E)-1-(3-cyclopentyloxy-4-methoxyphenyl)ethylideneamino] carbamate | 1797296: Phosphodiesterase (PDE) Inhibition Assay from Article 10.1016/j.str.2004.10.004: “Structural basis for the activity of drugs that inhibit phosphodiesterases.” | ic50 | 0.9900 | uM |
| 1-(6-fluoro-3-pyridinyl)-6-methoxy-3,4-dimethyl-8-pyridin-4-ylimidazo[1,5-a]quinoxaline | 1265661: Inhibition of human PDE7B using [3H]cAMP as substrate after 30 mins by scintillation proximity assay | ic50 | 1.0000 | uM |
CTD chemical–gene interactions
58 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 3 |
| sodium arsenite | affects expression, decreases expression, increases abundance | 2 |
| Cyclic AMP | decreases reaction, increases hydrolysis | 2 |
| Arsenic | affects methylation, decreases expression, increases abundance | 2 |
| Dipyridamole | decreases reaction, increases hydrolysis | 2 |
| Tobacco Smoke Pollution | decreases expression | 2 |
| 1-Methyl-3-isobutylxanthine | decreases reaction, increases hydrolysis | 2 |
| testosterone enanthate | increases hydrolysis, increases metabolic processing | 1 |
| methyleugenol | decreases expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| ethyl-p-hydroxybenzoate | increases expression | 1 |
| trichostatin A | decreases expression | 1 |
| vinpocetine | decreases reaction, increases hydrolysis | 1 |
| sulforaphane | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| cupric chloride | decreases expression | 1 |
| coumarin | decreases phosphorylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| E 4021 | decreases reaction, increases hydrolysis | 1 |
| SCH 51866 | increases hydrolysis, decreases reaction | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
| 2,2’,4,4’,5-brominated diphenyl ether | decreases expression | 1 |
| belinostat | increases expression | 1 |
| abrine | decreases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
ChEMBL screening assays
89 unique, capped per target: 83 binding, 4 admet, 1 functional, 1 toxicity
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1943244 | Binding | Inhibition of recombinant human PDE7 using [3H]cAMP as substrate by scintillation proximity assay | The discovery of potent, selective, and orally active pyrazoloquinolines as PDE10A inhibitors for the treatment of Schizophrenia. — Bioorg Med Chem Lett |
| CHEMBL4348842 | ADMET | Inhibition of PDE7 (unknown origin) | Structure Overhaul Affords a Potent Purine PI3Kδ Inhibitor with Improved Tolerability. — J Med Chem |
| CHEMBL858855 | Functional | Inhibition of PDE7 in HuT78 cells at 100 uM | First dual M3 antagonists-PDE4 inhibitors: synthesis and SAR of 4,6-diaminopyrimidine derivatives. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
- Targeted by drugs: Dipyridamole
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): alcoholic liver cirrhosis, delirium, diverticulitis