PDZRN3-AS1

Summary

PDZRN3-AS1 (PDZRN3 antisense RNA 1, HGNC:40814) is a long non-coding RNA gene on chromosome 3p13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40814
Approved symbol	PDZRN3-AS1
Name	PDZRN3 antisense RNA 1
Location	3p13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000239677
Ensembl biotype	lncRNA
Entrez	101927249
RNAcentral	URS000075B6EC — lncRNA, 2886 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000478988, ENST00000608304, ENST00000608743, ENST00000619517, ENST00000840462, ENST00000840463, ENST00000840464, ENST00000840465, ENST00000840466, ENST00000840467

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000478988 — 3 exons

Exon	Start	End
ENSE00001901724	73625412	73625506
ENSE00004263854	73626263	73627895
ENSE00004263863	73623586	73623965

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 85.50.

Top tissues by expression

118 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.50	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.79	gold quality
heart left ventricle	UBERON:0002084	74.29	gold quality
heart	UBERON:0000948	71.91	gold quality
apex of heart	UBERON:0002098	71.49	gold quality
right atrium auricular region	UBERON:0006631	70.93	gold quality
skeletal muscle tissue	UBERON:0001134	70.06	gold quality
colonic epithelium	UBERON:0000397	68.07	silver quality
muscle tissue	UBERON:0002385	67.25	gold quality
urinary bladder	UBERON:0001255	65.31	gold quality
ventricular zone	UBERON:0003053	63.99	gold quality
gall bladder	UBERON:0002110	63.84	gold quality
ganglionic eminence	UBERON:0004023	63.39	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.70	gold quality
popliteal artery	UBERON:0002250	61.01	gold quality
tibial artery	UBERON:0007610	60.93	gold quality
placenta	UBERON:0001987	60.36	gold quality
smooth muscle tissue	UBERON:0001135	59.73	gold quality
ovary	UBERON:0000992	59.64	gold quality
descending thoracic aorta	UBERON:0002345	59.58	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	58.50	gold quality
muscle of leg	UBERON:0001383	58.32	gold quality
left ovary	UBERON:0002119	58.24	gold quality
adrenal tissue	UBERON:0018303	58.15	gold quality
cortical plate	UBERON:0005343	58.10	gold quality
left coronary artery	UBERON:0001626	58.00	gold quality
right ovary	UBERON:0002118	57.38	gold quality
lower esophagus	UBERON:0013473	57.04	gold quality
lower esophagus muscularis layer	UBERON:0035833	56.98	gold quality
prefrontal cortex	UBERON:0000451	56.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.54

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.