PDZRN4-AS1

Summary

PDZRN4-AS1 (PDZRN4 antisense RNA 1, HGNC:58277) is a long non-coding RNA gene on chromosome 12q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58277
Approved symbol	PDZRN4-AS1
Name	PDZRN4 antisense RNA 1
Location	12q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257228
Ensembl biotype	lncRNA
Entrez	107984499
RNAcentral	URS0000100BA4 — lncRNA, 923 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000547168, ENST00000548450

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000547168 — 5 exons

Exon	Start	End
ENSE00002349957	41412401	41412536
ENSE00002357266	41412214	41412284
ENSE00002384669	41413013	41413086
ENSE00002395832	41409467	41409962
ENSE00002417533	41473365	41473510

Expression profiles

Bgee: expression breadth broad, 94 present calls, max score 81.28.

Top tissues by expression

194 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	81.28	gold quality
calcaneal tendon	UBERON:0003701	78.07	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.00	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.93	gold quality
colonic epithelium	UBERON:0000397	66.55	silver quality
sural nerve	UBERON:0015488	66.44	gold quality
islet of Langerhans	UBERON:0000006	66.39	gold quality
tendon	UBERON:0000043	63.81	gold quality
muscle of leg	UBERON:0001383	59.34	gold quality
pancreas	UBERON:0001264	57.62	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.87	gold quality
endocervix	UBERON:0000458	55.17	gold quality
monocyte	CL:0000576	52.54	silver quality
prefrontal cortex	UBERON:0000451	50.69	gold quality
lower lobe of lung	UBERON:0008949	50.17	silver quality
uterine cervix	UBERON:0000002	49.85	gold quality
ectocervix	UBERON:0012249	49.76	gold quality
gall bladder	UBERON:0002110	49.32	gold quality
popliteal artery	UBERON:0002250	48.86	gold quality
vermiform appendix	UBERON:0001154	48.80	gold quality
tibial artery	UBERON:0007610	48.79	gold quality
urinary bladder	UBERON:0001255	48.72	silver quality
gastrocnemius	UBERON:0001388	48.40	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.20	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	48.13	gold quality
aorta	UBERON:0000947	48.10	gold quality
body of pancreas	UBERON:0001150	47.66	gold quality
tibial nerve	UBERON:0001323	47.64	gold quality
muscle layer of sigmoid colon	UBERON:0035805	47.63	gold quality
small intestine	UBERON:0002108	47.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.73

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.