PEF1-AS1

Summary

PEF1-AS1 (PEF1 and COL16A1 antisense RNA 1, HGNC:40154) is a long non-coding RNA gene on chromosome 1p35.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40154
Approved symbol	PEF1-AS1
Name	PEF1 and COL16A1 antisense RNA 1
Location	1p35.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235790
Ensembl biotype	lncRNA
Entrez	107985471
RNAcentral	URS00026A21FA — lncRNA, 1351 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 43 — 43 lncRNA

ENST00000445166, ENST00000581333, ENST00000585413, ENST00000585660, ENST00000587445, ENST00000588288, ENST00000589462, ENST00000591592, ENST00000591929, ENST00000593188, ENST00000607926, ENST00000608246, ENST00000608332, ENST00000608888, ENST00000609033, ENST00000609338, ENST00000609373, ENST00000609549, ENST00000609625, ENST00000610043, ENST00000610216, ENST00000623425, ENST00000623786, ENST00000623791, ENST00000624388, ENST00000820349, ENST00000820350, ENST00000820351, ENST00000820352, ENST00000820353, ENST00000820354, ENST00000820355, ENST00000820356, ENST00000820357, ENST00000820358, ENST00000820359, ENST00000820360, ENST00000820361, ENST00000820362, ENST00000820363, ENST00000820364, ENST00000820365, ENST00000820366

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000445166 — 2 exons

Exon	Start	End
ENSE00001691559	31656109	31656185
ENSE00001793595	31659654	31659938

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 83.42.

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	83.42	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.59	gold quality
right ovary	UBERON:0002118	78.76	gold quality
skin of leg	UBERON:0001511	78.57	gold quality
endocervix	UBERON:0000458	78.52	gold quality
left ovary	UBERON:0002119	78.23	gold quality
mucosa of stomach	UBERON:0001199	78.12	gold quality
zone of skin	UBERON:0000014	77.97	gold quality
ovary	UBERON:0000992	77.88	gold quality
left testis	UBERON:0004533	77.86	gold quality
ectocervix	UBERON:0012249	77.60	gold quality
testis	UBERON:0000473	77.52	gold quality
right testis	UBERON:0004534	77.32	gold quality
skin of abdomen	UBERON:0001416	77.00	gold quality
left lobe of thyroid gland	UBERON:0001120	76.95	gold quality
right coronary artery	UBERON:0001625	76.66	gold quality
tibial nerve	UBERON:0001323	76.62	gold quality
uterine cervix	UBERON:0000002	76.37	gold quality
thyroid gland	UBERON:0002046	76.35	gold quality
right lobe of thyroid gland	UBERON:0001119	76.33	gold quality
ascending aorta	UBERON:0001496	76.00	gold quality
thoracic aorta	UBERON:0001515	75.67	gold quality
prostate gland	UBERON:0002367	75.35	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	75.34	gold quality
body of uterus	UBERON:0009853	75.07	gold quality
descending thoracic aorta	UBERON:0002345	75.02	gold quality
vagina	UBERON:0000996	74.64	gold quality
subcutaneous adipose tissue	UBERON:0002190	74.02	gold quality
tibial artery	UBERON:0007610	73.93	gold quality
popliteal artery	UBERON:0002250	73.91	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.