PHACTR2
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Also known as KIAA0680
Summary
PHACTR2 (phosphatase and actin regulator 2, HGNC:20956) is a protein-coding gene on chromosome 6q24.2, encoding Phosphatase and actin regulator 2 (O75167).
Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Predicted to be located in plasma membrane and platelet alpha granule membrane. Implicated in Parkinson’s disease and multiple sclerosis. Biomarker of Alzheimer’s disease.
Source: NCBI Gene 9749 — RefSeq curated summary.
At a glance
- Gene–disease (curated): dilated cardiomyopathy (Limited, GenCC)
- GWAS associations: 6
- Clinical variants (ClinVar): 121 total
- MANE Select transcript:
NM_001100164
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:20956 |
| Approved symbol | PHACTR2 |
| Name | phosphatase and actin regulator 2 |
| Location | 6q24.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0680 |
| Ensembl gene | ENSG00000112419 |
| Ensembl biotype | protein_coding |
| OMIM | 608724 |
| Entrez | 9749 |
Gene structure
Transcript identifiers
Ensembl transcripts: 29 — 25 protein_coding, 4 retained_intron
ENST00000305766, ENST00000367582, ENST00000367584, ENST00000397980, ENST00000402863, ENST00000420771, ENST00000427704, ENST00000440869, ENST00000451827, ENST00000536245, ENST00000542769, ENST00000545919, ENST00000888542, ENST00000888543, ENST00000888544, ENST00000888545, ENST00000888546, ENST00000888547, ENST00000888548, ENST00000888549, ENST00000940786, ENST00000940787, ENST00000960136, ENST00000960137, ENST00000960138, ENST00000960139, ENST00000960140, ENST00000960141, ENST00000960142
RefSeq mRNA: 6 — MANE Select: NM_001100164
NM_001100164, NM_001100165, NM_001100166, NM_001394736, NM_001394738, NM_014721
CCDS: CCDS43512, CCDS47492, CCDS47493, CCDS47494, CCDS94015
Canonical transcript exons
ENST00000440869 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000764879 | 143760401 | 143760640 |
| ENSE00001546874 | 143823674 | 143831185 |
| ENSE00001547270 | 143677965 | 143678209 |
| ENSE00002440164 | 143774059 | 143774215 |
| ENSE00002511234 | 143807057 | 143807133 |
| ENSE00002531424 | 143788773 | 143788910 |
| ENSE00002532214 | 143772258 | 143772457 |
| ENSE00002726944 | 143765261 | 143765798 |
| ENSE00003479082 | 143783219 | 143783280 |
| ENSE00003489037 | 143748985 | 143749065 |
| ENSE00003519023 | 143777328 | 143777383 |
| ENSE00003587870 | 143712016 | 143712183 |
| ENSE00003688852 | 143753754 | 143753912 |
Expression profiles
Bgee: expression breadth ubiquitous, 291 present calls, max score 97.77.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 33.5610 / max 342.1206, expressed in 1789 samples.
FANTOM5 promoters (15 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 70256 | 22.8788 | 1725 |
| 70250 | 8.1316 | 1572 |
| 70262 | 0.5684 | 239 |
| 70247 | 0.4573 | 210 |
| 70253 | 0.3812 | 90 |
| 70263 | 0.3191 | 135 |
| 70257 | 0.2638 | 113 |
| 70255 | 0.1909 | 72 |
| 70252 | 0.0838 | 48 |
| 70248 | 0.0755 | 19 |
Top tissues by expression
297 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| placenta | UBERON:0001987 | 97.77 | gold quality |
| adrenal tissue | UBERON:0018303 | 97.33 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 96.96 | gold quality |
| retina | UBERON:0000966 | 96.94 | gold quality |
| heart right ventricle | UBERON:0002080 | 96.72 | gold quality |
| amniotic fluid | UBERON:0000173 | 96.71 | gold quality |
| lower lobe of lung | UBERON:0008949 | 96.52 | gold quality |
| oral cavity | UBERON:0000167 | 96.39 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 96.22 | gold quality |
| eye | UBERON:0000970 | 96.18 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 95.94 | gold quality |
| visceral pleura | UBERON:0002401 | 95.46 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 95.37 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 95.13 | gold quality |
| colonic epithelium | UBERON:0000397 | 94.69 | gold quality |
| superficial temporal artery | UBERON:0001614 | 94.48 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 93.92 | gold quality |
| urethra | UBERON:0000057 | 93.90 | gold quality |
| pylorus | UBERON:0001166 | 93.61 | gold quality |
| decidua | UBERON:0002450 | 93.35 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 93.21 | gold quality |
| myocardium | UBERON:0002349 | 92.95 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 92.94 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 92.82 | gold quality |
| calcaneal tendon | UBERON:0003701 | 92.69 | gold quality |
| squamous epithelium | UBERON:0006914 | 92.55 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 92.53 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 92.48 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 92.36 | gold quality |
| caput epididymis | UBERON:0004358 | 92.26 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6701 | yes | 72.20 |
| E-GEOD-83139 | yes | 8.26 |
| E-GEOD-70580 | no | 670.27 |
| E-MTAB-7008 | no | 600.37 |
| E-MTAB-6678 | no | 3.47 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
357 targeting PHACTR2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-3120-5P | 100.00 | 65.56 | 965 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
Literature-anchored findings (GeneRIF, showing 3)
- identified an association between Phactr2 SNP rs11155313 and Parkinson’s disease in US, Canadian and Irish patient populations, but not in a Norwegian population (PMID:19429005)
- The frequencies of genotype and allele in CHRNA3 (rs8040868) and PHACTR2 (rs9390123) were not significantly different between the NSCLC cases and controls, or between either of the subgroups. (PMID:25399010)
- rs9390123 and rs9399451 influence the DNA repair capacity of lung cancer by regulating PEX3 and PHACTR2AS1 expression instead of PHACTR2. (PMID:35059740)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | phactr2 | ENSDARG00000027172 |
| mus_musculus | Phactr2 | ENSMUSG00000062866 |
| rattus_norvegicus | Phactr2 | ENSRNOG00000015473 |
| drosophila_melanogaster | CG32264 | FBGN0052264 |
| caenorhabditis_elegans | phac-1 | WBGENE00009174 |
Paralogs (3): PHACTR3 (ENSG00000087495), PHACTR1 (ENSG00000112137), PHACTR4 (ENSG00000204138)
Protein
Protein identifiers
Phosphatase and actin regulator 2 — O75167 (reviewed: O75167)
All UniProt accessions (5): O75167, F5H858, F6TH74, H9KVA6, J3KP75
UniProt curated annotations — full annotation on UniProt →
Subunit / interactions. Binds PPP1CA and actin.
Subcellular location. Membrane Membrane.
Similarity. Belongs to the phosphatase and actin regulator family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O75167-1 | 1 | yes |
| O75167-2 | 2 | |
| O75167-4 | 4 | |
| O75167-5 | 5 |
RefSeq proteins (6): NP_001093634, NP_001093635, NP_001093636, NP_001381665, NP_001381667, NP_055536 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004018 | RPEL_repeat | Repeat |
Pfam: PF02755
UniProt features (36 total): compositionally biased region 10, modified residue 5, repeat 4, sequence conflict 4, region of interest 4, splice variant 2, sequence variant 2, initiator methionine 2, lipid moiety-binding region 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O75167-F1 | 61.66 | 0.22 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (7): 16, 25, 423, 522, 560, 2, 2
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-114608 | Platelet degranulation |
MSigDB gene sets: 326 (showing top):
GOCC_SECRETORY_GRANULE, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, ATGTTAA_MIR302C, RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN, INAMURA_LUNG_CANCER_SCC_DN, DEURIG_T_CELL_PROLYMPHOCYTIC_LEUKEMIA_DN, KIM_GERMINAL_CENTER_T_HELPER_UP, TANAKA_METHYLATED_IN_ESOPHAGEAL_CARCINOMA, TIEN_INTESTINE_PROBIOTICS_24HR_UP, TGTTTAC_MIR30A5P_MIR30C_MIR30D_MIR30B_MIR30E5P, GOMF_ACTIN_BINDING, SENESE_HDAC1_TARGETS_UP, VANTVEER_BREAST_CANCER_ESR1_DN, MODULE_397, RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_UP
GO Biological Process (1): actin cytoskeleton organization (GO:0030036)
GO Molecular Function (3): actin binding (GO:0003779), protein phosphatase inhibitor activity (GO:0004864), protein binding (GO:0005515)
GO Cellular Component (3): plasma membrane (GO:0005886), platelet alpha granule membrane (GO:0031092), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Response to elevated platelet cytosolic Ca2+ | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cytoskeleton organization | 1 |
| actin filament-based process | 1 |
| cytoskeletal protein binding | 1 |
| phosphoprotein phosphatase activity | 1 |
| phosphatase inhibitor activity | 1 |
| protein phosphatase regulator activity | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| secretory granule membrane | 1 |
| platelet alpha granule | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
780 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PHACTR2 | PLAGL1 | Q9UM63 | 608 |
| PHACTR2 | TBL2 | Q9Y4P3 | 526 |
| PHACTR2 | TMEM150C | B9EJG8 | 472 |
| PHACTR2 | TOPORS | Q9NS56 | 459 |
| PHACTR2 | FUCA1 | P04066 | 437 |
| PHACTR2 | MAGEA10 | P43363 | 425 |
| PHACTR2 | GPRC5C | Q9NQ84 | 424 |
| PHACTR2 | SH3PXD2B | A1X283 | 418 |
| PHACTR2 | KCND3 | Q9UK17 | 418 |
| PHACTR2 | KIF3A | Q9Y496 | 418 |
| PHACTR2 | SLITRK6 | Q9H5Y7 | 418 |
| PHACTR2 | NKAPD1 | Q6ZUT1 | 410 |
| PHACTR2 | ARFGEF3 | Q5TH69 | 393 |
| PHACTR2 | OPN4 | Q9UHM6 | 385 |
| PHACTR2 | ZC2HC1B | Q5TFG8 | 384 |
IntAct
30 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| BCL7A | ARID1A | psi-mi:“MI:0914”(association) | 0.640 |
| BCL7C | ARID1A | psi-mi:“MI:0914”(association) | 0.640 |
| YWHAH | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.610 |
| YWHAG | SHTN1 | psi-mi:“MI:0914”(association) | 0.560 |
| PHACTR2 | POTEI | psi-mi:“MI:0914”(association) | 0.530 |
| PHACTR2 | ACTA2 | psi-mi:“MI:0914”(association) | 0.530 |
| CRK | PHACTR2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PHACTR2 | SRC | psi-mi:“MI:0915”(physical association) | 0.400 |
| GRB2 | PHACTR2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| NCK1 | PHACTR2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PIK3R1 | PHACTR2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PLCG1 | PHACTR2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PHACTR2 | H2BC9 | psi-mi:“MI:0915”(physical association) | 0.400 |
| BCL7A | DPF1 | psi-mi:“MI:0914”(association) | 0.350 |
| BCL7C | DPF1 | psi-mi:“MI:0914”(association) | 0.350 |
| TMOD3 | MEIS2 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAG | C1orf226 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAH | SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAQ | SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
| ACTB | ENAH | psi-mi:“MI:0914”(association) | 0.350 |
| ACTG1 | ENAH | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAG | FOXO6 | psi-mi:“MI:0914”(association) | 0.350 |
| TMOD3 | PRPF4 | psi-mi:“MI:0914”(association) | 0.350 |
| KLHL22 | TRAV18 | psi-mi:“MI:0914”(association) | 0.350 |
| CDH1 | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| KCNK3 | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (46): PHACTR2 (Proximity Label-MS), PHACTR2 (Affinity Capture-MS), POTEI (Affinity Capture-MS), PHACTR2 (Affinity Capture-MS), ACTA2 (Affinity Capture-MS), ACTBL2 (Affinity Capture-MS), ACTB (Affinity Capture-MS), PHACTR2 (Affinity Capture-MS), ACTC1 (Affinity Capture-MS), PHACTR2 (Affinity Capture-RNA), PHACTR2 (Affinity Capture-RNA), PHACTR2 (Affinity Capture-MS), PHACTR2 (Proximity Label-MS), PHACTR2 (Affinity Capture-RNA), HIST1H2BH (Proximity Label-MS)
ESM2 similar proteins: A0A0R4IZ84, A0A1L8H8C0, A0A1L8HFX9, A2RUV4, F1LP90, F5HSE3, O43310, O60237, O75167, O88453, P41110, P61406, Q12830, Q1LVF3, Q2HJG4, Q2PFD7, Q3TLH4, Q5RAK6, Q5ZMS6, Q66HC1, Q6A0A2, Q6NRP6, Q6NZL0, Q6P1U3, Q6PKG0, Q75N33, Q7TN02, Q7TPM1, Q7YZA2, Q7Z6E9, Q80TN7, Q80XI3, Q86UR5, Q86US8, Q8IVL0, Q8IVL1, Q8K0V4, Q8N4C8, Q90YL3, Q90YY5
Diamond homologs: F1MCY2, F1N8V3, F1QIC4, F7EC58, O75167, P62024, P62025, Q2M3X8, Q501J7, Q5HZA1, Q5RAU1, Q5XHF3, Q6GLU8, Q6PEI3, Q6RFY2, Q801X6, Q8BYK5, Q8IZ21, Q96KR7, Q9C0D0
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 31 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Formation of the canonical BAF (cBAF) complex | 5 | 117.5× | 1e-07 |
| Downstream signal transduction | 6 | 84.6× | 3e-08 |
| Formation of neuronal progenitor and neuronal BAF (npBAF and nBAF) | 5 | 84.6× | 3e-07 |
| Regulation of MITF-M-dependent genes involved in pigmentation | 5 | 49.2× | 3e-06 |
| FCGR3A-mediated phagocytosis | 6 | 41.6× | 5e-07 |
| Regulation of actin dynamics for phagocytic cup formation | 5 | 34.1× | 1e-05 |
| MITF-M-dependent gene expression | 5 | 33.6× | 1e-05 |
| VEGFA-VEGFR2 Pathway | 6 | 30.9× | 2e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| regulation of G0 to G1 transition | 5 | 116.2× | 2e-07 |
| regulation of nucleotide-excision repair | 5 | 103.8× | 2e-07 |
| regulation of mitotic metaphase/anaphase transition | 5 | 85.5× | 4e-07 |
| positive regulation of double-strand break repair | 5 | 59.3× | 2e-06 |
| regulation of G1/S transition of mitotic cell cycle | 5 | 52.8× | 3e-06 |
| chromatin remodeling | 5 | 12.6× | 1e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
121 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 95 |
| Likely benign | 5 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3465 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:143712011:TACA:T | acceptor_loss | 1.0000 |
| 6:143712013:C:G | acceptor_gain | 1.0000 |
| 6:143712013:CAGTT:C | acceptor_loss | 1.0000 |
| 6:143712014:A:AG | acceptor_gain | 1.0000 |
| 6:143712014:A:AT | acceptor_loss | 1.0000 |
| 6:143712015:G:GT | acceptor_gain | 1.0000 |
| 6:143712015:GT:G | acceptor_gain | 1.0000 |
| 6:143712015:GTT:G | acceptor_gain | 1.0000 |
| 6:143712181:CAGG:C | donor_loss | 1.0000 |
| 6:143712182:AG:A | donor_loss | 1.0000 |
| 6:143712183:GGTAT:G | donor_loss | 1.0000 |
| 6:143712184:G:T | donor_loss | 1.0000 |
| 6:143712185:T:A | donor_loss | 1.0000 |
| 6:143748983:A:G | acceptor_gain | 1.0000 |
| 6:143755448:G:GT | donor_gain | 1.0000 |
| 6:143755448:G:T | donor_gain | 1.0000 |
| 6:143772253:A:AG | acceptor_gain | 1.0000 |
| 6:143772254:A:G | acceptor_gain | 1.0000 |
| 6:143772256:A:AG | acceptor_gain | 1.0000 |
| 6:143772257:G:GC | acceptor_gain | 1.0000 |
| 6:143772257:GT:G | acceptor_gain | 1.0000 |
| 6:143772257:GTT:G | acceptor_gain | 1.0000 |
| 6:143772257:GTTTC:G | acceptor_gain | 1.0000 |
| 6:143772442:G:GT | donor_gain | 1.0000 |
| 6:143772454:GAAA:G | donor_gain | 1.0000 |
| 6:143772455:A:T | donor_gain | 1.0000 |
| 6:143772456:AA:A | donor_gain | 1.0000 |
| 6:143772456:AAGTA:A | donor_loss | 1.0000 |
| 6:143772457:AG:A | donor_loss | 1.0000 |
| 6:143772458:G:C | donor_loss | 1.0000 |
AlphaMissense
4171 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:143712132:T:A | W44R | 1.000 |
| 6:143712132:T:C | W44R | 1.000 |
| 6:143774209:T:C | L517S | 1.000 |
| 6:143777333:T:C | L521P | 1.000 |
| 6:143777360:T:C | L530S | 1.000 |
| 6:143788801:T:C | L568P | 1.000 |
| 6:143788824:T:C | F576L | 1.000 |
| 6:143788825:T:C | F576S | 1.000 |
| 6:143788826:T:A | F576L | 1.000 |
| 6:143788826:T:G | F576L | 1.000 |
| 6:143788884:T:A | W596R | 1.000 |
| 6:143788884:T:C | W596R | 1.000 |
| 6:143788886:G:C | W596C | 1.000 |
| 6:143788886:G:T | W596C | 1.000 |
| 6:143788894:T:C | L599S | 1.000 |
| 6:143788908:A:C | K604Q | 1.000 |
| 6:143788908:A:G | K604E | 1.000 |
| 6:143788910:G:C | K604N | 1.000 |
| 6:143788910:G:T | K604N | 1.000 |
| 6:143807064:T:A | I607K | 1.000 |
| 6:143807064:T:C | I607T | 1.000 |
| 6:143807064:T:G | I607R | 1.000 |
| 6:143807067:G:C | R608T | 1.000 |
| 6:143807067:G:T | R608M | 1.000 |
| 6:143807068:G:C | R608S | 1.000 |
| 6:143807068:G:T | R608S | 1.000 |
| 6:143807076:T:A | L611Q | 1.000 |
| 6:143807076:T:C | L611P | 1.000 |
| 6:143807080:T:A | N612K | 1.000 |
| 6:143807080:T:G | N612K | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000024477 (6:143731840 A>G), RS1000050741 (6:143704178 A>C,T), RS1000086909 (6:143578965 G>A), RS1000093766 (6:143662249 G>A), RS1000095020 (6:143743263 G>A,T), RS1000104376 (6:143660226 C>T), RS1000106262 (6:143537052 C>CGGT), RS1000122655 (6:143577057 GGTT>G), RS1000129201 (6:143626512 G>A,C), RS1000149644 (6:143788268 A>T), RS1000178457 (6:143757739 A>G,T), RS1000193494 (6:143803790 A>G,T), RS1000204628 (6:143663798 A>C), RS1000216400 (6:143794708 C>T), RS1000219956 (6:143626473 C>G)
Disease associations
OMIM: gene MIM:608724 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| dilated cardiomyopathy | Limited | Autosomal recessive |
Mondo (1): dilated cardiomyopathy (MONDO:0005021)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001572_3 | Erectile dysfunction in type 1 diabetes | 4.000000e-06 |
| GCST001721_2 | Lung Cancer (DNA repair capacity) | 7.000000e-06 |
| GCST001725_91 | Inflammatory bowel disease | 2.000000e-08 |
| GCST001762_15 | Obesity-related traits | 8.000000e-06 |
| GCST007675_3 | 3-month functional outcome in non-lacunar ischaemic stroke (modified Rankin score) | 2.000000e-06 |
| GCST008760_12 | Perceived sweetness of sucrose | 2.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009603 | stroke outcome severity measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
50 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression, decreases methylation, increases expression | 7 |
| trichostatin A | affects cotreatment, decreases expression | 3 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 3 |
| Cyclosporine | decreases expression | 3 |
| methylmercuric chloride | increases expression, affects cotreatment | 2 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 2 |
| Air Pollutants | decreases expression, increases abundance | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Smoke | decreases expression, increases abundance | 2 |
| Cadmium Chloride | decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| geldanamycin | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| sulforaphane | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chromium hexavalent ion | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression, decreases expression | 1 |
| torcetrapib | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression, decreases expression | 1 |
| jinfukang | decreases expression | 1 |
Clinical trials (associated diseases)
158 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00374465 | PHASE4 | UNKNOWN | Therapy With Verapamil or Carvedilol in Chronic Heart Failure |
| NCT01293903 | PHASE4 | COMPLETED | Study of Qiliqiangxin Capsule to Treat Dilated Cardiomyopathy |
| NCT01557140 | PHASE4 | COMPLETED | A Randomized Trial of Carvedilol in Chronic Chagas Cardiomyopathy |
| NCT01917149 | PHASE4 | COMPLETED | Supramaximal Titrated Inhibition of RAAS in Dilated Cardiomyopathy |
| NCT02115581 | PHASE4 | COMPLETED | Coenzyme Q10 Supplementation in Children With Idiopathic Dilated Cardiomyopathy |
| NCT06236022 | PHASE4 | RECRUITING | The Effects of Sirolimus in Patients With Dilated Cardiomyopathy Infected With Kaposi Sarcoma-associated Virus |
| NCT00333827 | PHASE3 | COMPLETED | Cell Therapy In Dilated Cardiomyopathy |
| NCT00505154 | PHASE3 | COMPLETED | Effect of Rosuvastatin on Left Ventricular Remodeling |
| NCT01223703 | PHASE3 | COMPLETED | PUFAs and Left Ventricular Function in Heart Failure |
| NCT01583114 | PHASE3 | TERMINATED | PREclinical Mutation CARriers From Families With DIlated Cardiomyopathy and ACE Inhibitors |
| NCT01914081 | PHASE3 | UNKNOWN | Resveratrol: A Potential Anti- Remodeling Agent in Heart Failure, From Bench to Bedside |
| NCT02989181 | PHASE3 | UNKNOWN | Continues Positive Airway Pressure Treatment for Patients With Dilated Cardiomyopathy and Obstructive Sleep Apnea |
| NCT03439514 | PHASE3 | TERMINATED | A Study of ARRY-371797 (PF-07265803) in Patients With Symptomatic Dilated Cardiomyopathy Due to a Lamin A/C Gene Mutation |
| NCT05237323 | PHASE3 | COMPLETED | Micophenolate Mofetil Versus Azathioprine in Myocarditis |
| NCT05849766 | PHASE3 | COMPLETED | Effect of Dapagliflozin on Cardiac Structure, Function and Secondary Mitral Regurgitation in Patients with Left Ventricle Dysfunction |
| NCT06250257 | PHASE3 | RECRUITING | Bromocriptine in Dilated Cardiomyopathy Among Women of Reproductive Age |
| NCT00629018 | PHASE2 | COMPLETED | Safety and Efficacy Study of Stem Cell Transplantation to Treat Dilated Cardiomyopathy |
| NCT00629096 | PHASE2 | COMPLETED | Intracoronary Infusion of Autologous Bone Marrow Cells for Treatment of Idiopathic Dilated Cardiomyopathy |
| NCT00765518 | PHASE2 | COMPLETED | Use of Ixmyelocel-T (Formerly Cardiac Repair Cell [CRC] Treatment) in Patients With Heart Failure Due to Dilated Cardiomyopathy (IMPACT-DCM) |
| NCT00847964 | PHASE2 | COMPLETED | Safety and Feasibility of Algisyl-LVR™ as a Method of Left Ventricular Restoration in Patients With DCM Undergoing Open-heart Surgery |
| NCT01020968 | PHASE2 | COMPLETED | Use of Ixmyelocel-T (Formerly Catheter-based Cardiac Repair Cell [CRC]) Treatment in Patients With Heart Failure Due to Dilated Cardiomyopathy |
| NCT01302171 | PHASE2 | COMPLETED | Bone Marrow Derived Adult Stem Cells for Dilated Cardiomyopathy |
| NCT01350310 | PHASE2 | COMPLETED | Safety and Efficacy Study of Intramyocardial Stem Cell Therapy in Patients With Dilated Cardiomyopathy |
| NCT02133911 | PHASE2 | COMPLETED | A Pilot Trial of Ranolazine to Treat Patients With Dilated Cardiomyopathy |
| NCT03071653 | PHASE2 | SUSPENDED | Left Cardiac Sympathetic Denervation for Cardiomyopathy Feasibility Pilot Study |
| NCT03572660 | PHASE2 | ACTIVE_NOT_RECRUITING | Use of Bone Marrow Derived Stem Cell and G-CSF With Circulatory Assistance in the Treatment of DCM |
| NCT03775070 | PHASE2 | COMPLETED | Simvastatin Therapy in Patients With Dilated Cardiomyopathy. |
| NCT04405804 | PHASE2 | UNKNOWN | Early Administration of Ivabradine in Children With Heart Failure |
| NCT05410873 | PHASE2 | COMPLETED | Examining the Effects of Mitochondrial Oxidative Stress in DCM |
| NCT06632834 | PHASE2 | RECRUITING | Outcome-targeted Therapy: Principle and Outcome Evaluation: Clinical Study and Phenotype-genotype Correlation |
| NCT00585546 | PHASE1 | TERMINATED | Harefield Recovery Protocol Study for Patients With Refractory Chronic Heart Failure |
| NCT02293603 | PHASE1 | UNKNOWN | Dilated cardiomYopathy iNtervention With Allogeneic MyocardIally-regenerative Cells (DYNAMIC) |
| NCT03062956 | PHASE1 | COMPLETED | A Single Ascending Dose Study Assessing the Safety, Tolerability, PK and PD of MYK-491 |
| NCT03129568 | PHASE1 | COMPLETED | Transcoronary Infusion of Cardiac Progenitor Cells in Pediatric Dilated Cardiomyopathy |
| NCT04982081 | PHASE1 | UNKNOWN | Treating Congestive HF With hiPSC-CMs Through Endocardial Injection |
| NCT06381466 | PHASE1 | TERMINATED | A Study to Investigate Safety, Tolerability, and Pharmacokinetics of Oral AZD0233 Compared With Placebo in Healthy Adult Participants. |
| NCT06464588 | PHASE1 | RECRUITING | A Phase 1 Open-Label Study of the Safety of Intravenous Allogeneic Neonatal Mesenchymal Cells (nMSCs) in Young Adult (1A) and Pediatric (1B) Patients With Dilated Cardiomyopathy (DCM) |
| NCT06902896 | PHASE1 | COMPLETED | Safety and Efficacy of FAP iCDC in End-stage Dilated Cardiomyopathy |
| NCT07137338 | PHASE1 | RECRUITING | A Phase 1 AAV Gene Therapy Trial Evaluating Safety and Preliminary Efficacy of RP-A701 in Subjects With BAG3 Dilated Cardiomyopathy |
| NCT07241104 | PHASE1 | RECRUITING | A Study of AZD4063 in PLN R14del Dilated Cardiomyopathy |
Related Atlas pages
- Associated diseases: dilated cardiomyopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): dilated cardiomyopathy, erectile dysfunction