PHC2-AS1

Summary

PHC2-AS1 (PHC2 antisense RNA 1, HGNC:40205) is a long non-coding RNA gene on chromosome 1p35.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40205
Approved symbol	PHC2-AS1
Name	PHC2 antisense RNA 1
Location	1p35.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233246
Ensembl biotype	lncRNA
Entrez	101929464
RNAcentral	URS00002ADFF9 — lncRNA, 490 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000432703, ENST00000829393, ENST00000829394

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000432703 — 3 exons

Exon	Start	End
ENSE00001731331	33358861	33359074
ENSE00004242770	33363066	33363247
ENSE00004242771	33350040	33350447

Expression profiles

Bgee: expression breadth ubiquitous, 141 present calls, max score 91.48.

Top tissues by expression

239 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	91.48	gold quality
right testis	UBERON:0004534	89.26	gold quality
left testis	UBERON:0004533	88.41	gold quality
testis	UBERON:0000473	85.26	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.85	gold quality
buccal mucosa cell	CL:0002336	74.86	gold quality
ganglionic eminence	UBERON:0004023	67.92	gold quality
tibialis anterior	UBERON:0001385	63.61	silver quality
gall bladder	UBERON:0002110	63.45	gold quality
pancreatic ductal cell	CL:0002079	62.71	silver quality
muscle layer of sigmoid colon	UBERON:0035805	58.03	gold quality
lower esophagus	UBERON:0013473	57.64	gold quality
lower esophagus muscularis layer	UBERON:0035833	57.61	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	56.86	gold quality
pons	UBERON:0000988	56.85	gold quality
stromal cell of endometrium	CL:0002255	55.66	gold quality
epithelial cell of pancreas	CL:0000083	54.98	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.92	gold quality
deltoid	UBERON:0001476	54.91	gold quality
popliteal artery	UBERON:0002250	54.74	gold quality
tibial artery	UBERON:0007610	54.68	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
vermiform appendix	UBERON:0001154	54.13	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
calcaneal tendon	UBERON:0003701	53.74	silver quality
upper arm skin	UBERON:0004263	53.52	gold quality
hindlimb stylopod muscle	UBERON:0004252	53.42	gold quality
islet of Langerhans	UBERON:0000006	53.30	gold quality
oviduct epithelium	UBERON:0004804	53.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.67

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.