PHKA1-AS1

Summary

PHKA1-AS1 (PHKA1 antisense RNA 1, HGNC:40446) is a long non-coding RNA gene on chromosome Xq13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40446
Approved symbol	PHKA1-AS1
Name	PHKA1 antisense RNA 1
Location	Xq13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231944
Ensembl biotype	lncRNA
Entrez	101928259
RNAcentral	URS000075CE6E — lncRNA, 599 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000420998

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420998 — 5 exons

Exon	Start	End
ENSE00001623284	72709431	72709475
ENSE00001634051	72697159	72697198
ENSE00001658028	72707849	72707916
ENSE00001695530	72711957	72712348
ENSE00001793153	72688950	72689002

Expression profiles

Bgee: expression breadth ubiquitous, 101 present calls, max score 90.64.

Top tissues by expression

201 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	90.64	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.40	gold quality
buccal mucosa cell	CL:0002336	73.11	silver quality
hindlimb stylopod muscle	UBERON:0004252	64.49	gold quality
calcaneal tendon	UBERON:0003701	58.25	gold quality
monocyte	CL:0000576	57.67	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.99	gold quality
gall bladder	UBERON:0002110	53.48	gold quality
muscle of leg	UBERON:0001383	52.39	gold quality
islet of Langerhans	UBERON:0000006	51.96	gold quality
gastrocnemius	UBERON:0001388	51.07	gold quality
prefrontal cortex	UBERON:0000451	48.46	gold quality
right adrenal gland cortex	UBERON:0035827	47.83	gold quality
left ovary	UBERON:0002119	46.85	gold quality
nasal cavity mucosa	UBERON:0001826	46.52	gold quality
left adrenal gland cortex	UBERON:0035825	46.29	gold quality
tendon	UBERON:0000043	46.23	silver quality
cortex of kidney	UBERON:0001225	46.00	gold quality
pancreas	UBERON:0001264	46.00	gold quality
right lobe of liver	UBERON:0001114	45.91	silver quality
thoracic aorta	UBERON:0001515	45.91	gold quality
ascending aorta	UBERON:0001496	45.89	gold quality
adrenal cortex	UBERON:0001235	45.86	gold quality
skeletal muscle tissue	UBERON:0001134	45.59	gold quality
left adrenal gland	UBERON:0001234	45.57	gold quality
body of uterus	UBERON:0009853	45.52	gold quality
body of pancreas	UBERON:0001150	45.28	silver quality
cerebellar cortex	UBERON:0002129	45.26	silver quality
right ovary	UBERON:0002118	45.14	silver quality
ovary	UBERON:0000992	45.11	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.