PIGY
gene geneOn this page
Also known as MGC14156PIG-Y
Summary
PIGY (phosphatidylinositol glycan anchor biosynthesis class Y, HGNC:28213) is a protein-coding gene on chromosome 4q22.1, encoding Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y (Q3MUY2). Part of the glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex that catalyzes the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol and participates in the first step of GPI biosynthesis.
The protein encoded by this gene is part of the GPI-N-acetylglucosaminyltransferase (GIP-GnT) complex which initiates the biosynthesis of glycosylphosphatidylinositol (GPI). GPI is synthesized in the endoplasmic reticulum and serves as an anchor for many surface proteins. Proteins containing GPI anchors can have an important role in cell-cell interactions. The transcript for this gene is bicistronic. The downstream open reading frame encodes this GPI-GnT complex protein, while the upstream open reading frame encodes a protein with unknown function, as represented by GeneID:100996939.
Source: NCBI Gene 84992 — RefSeq curated summary.
At a glance
- Gene–disease (curated): hyperphosphatasia with intellectual disability syndrome 6 (Strong, GenCC) — +1 more curated relationship
- GWAS associations: 4
- Clinical variants (ClinVar): 21 total — 3 pathogenic
- Phenotypes (HPO): 99
- MANE Select transcript:
NM_001042616
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28213 |
| Approved symbol | PIGY |
| Name | phosphatidylinositol glycan anchor biosynthesis class Y |
| Location | 4q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC14156, PIG-Y |
| Ensembl gene | ENSG00000255072 |
| Ensembl biotype | protein_coding |
| OMIM | 610662 |
| Entrez | 84992 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000527353
RefSeq mRNA: 1 — MANE Select: NM_001042616
NM_001042616
CCDS: CCDS54778
Canonical transcript exons
ENST00000527353 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002193394 | 88520998 | 88522029 |
| ENSE00003909565 | 88523498 | 88523776 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 94.50.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 11.3294 / max 167.2393, expressed in 1777 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 53098 | 67.6767 | 1824 |
| 53097 | 11.0189 | 1773 |
| 53096 | 0.3105 | 120 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| islet of Langerhans | UBERON:0000006 | 94.50 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 94.21 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 94.11 | gold quality |
| body of pancreas | UBERON:0001150 | 94.11 | gold quality |
| pancreas | UBERON:0001264 | 94.03 | gold quality |
| left adrenal gland | UBERON:0001234 | 93.82 | gold quality |
| left coronary artery | UBERON:0001626 | 93.81 | gold quality |
| left uterine tube | UBERON:0001303 | 93.78 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 93.78 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 93.72 | gold quality |
| monocyte | CL:0000576 | 93.67 | gold quality |
| leukocyte | CL:0000738 | 93.67 | gold quality |
| right adrenal gland | UBERON:0001233 | 93.66 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 93.62 | gold quality |
| endometrium | UBERON:0001295 | 93.61 | gold quality |
| popliteal artery | UBERON:0002250 | 93.57 | gold quality |
| fallopian tube | UBERON:0003889 | 93.57 | gold quality |
| tibial artery | UBERON:0007610 | 93.57 | gold quality |
| substantia nigra | UBERON:0002038 | 93.48 | gold quality |
| body of uterus | UBERON:0009853 | 93.44 | gold quality |
| hypothalamus | UBERON:0001898 | 93.37 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 93.36 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 93.35 | gold quality |
| ectocervix | UBERON:0012249 | 93.31 | gold quality |
| adipose tissue | UBERON:0001013 | 93.27 | gold quality |
| ventricular zone | UBERON:0003053 | 93.26 | gold quality |
| thoracic aorta | UBERON:0001515 | 93.22 | gold quality |
| omental fat pad | UBERON:0010414 | 93.18 | gold quality |
| ascending aorta | UBERON:0001496 | 93.17 | gold quality |
| endocervix | UBERON:0000458 | 93.16 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
38 targeting PIGY, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-5680 | 99.91 | 69.83 | 3421 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-137-3P | 99.87 | 74.74 | 2401 |
| HSA-MIR-4698 | 99.84 | 71.41 | 4303 |
| HSA-MIR-6505-5P | 99.73 | 69.25 | 1595 |
| HSA-MIR-4328 | 99.57 | 71.06 | 4094 |
| HSA-MIR-105-5P | 99.54 | 69.24 | 2060 |
| HSA-MIR-7853-5P | 99.54 | 69.30 | 2055 |
| HSA-MIR-3120-3P | 99.54 | 70.28 | 2669 |
| HSA-MIR-6083 | 99.47 | 68.73 | 2393 |
| HSA-MIR-29B-1-5P | 98.86 | 68.35 | 1364 |
| HSA-MIR-513B-3P | 98.76 | 68.12 | 1577 |
| HSA-MIR-6873-5P | 98.45 | 66.14 | 1417 |
| HSA-MIR-4436B-3P | 98.25 | 65.26 | 1494 |
| HSA-MIR-6735-5P | 98.24 | 65.36 | 1488 |
| HSA-MIR-7843-5P | 98.12 | 65.26 | 1421 |
| HSA-MIR-6757-5P | 98.08 | 65.50 | 724 |
| HSA-MIR-4772-3P | 98.04 | 65.60 | 1203 |
| HSA-MIR-4632-5P | 97.82 | 65.38 | 1470 |
| HSA-MIR-3614-3P | 97.81 | 67.15 | 582 |
| HSA-MIR-127-5P | 97.78 | 67.64 | 869 |
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Pigyl | ENSMUSG00000010607 |
| rattus_norvegicus | Pigy | ENSRNOG00000052134 |
Protein
Protein identifiers
Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y — Q3MUY2 (reviewed: Q3MUY2)
Alternative names: Phosphatidylinositol-glycan biosynthesis class Y protein
All UniProt accessions (1): Q3MUY2
UniProt curated annotations — full annotation on UniProt →
Function. Part of the glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex that catalyzes the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol and participates in the first step of GPI biosynthesis. May act by regulating the catalytic subunit PIGA.
Subunit / interactions. Component of the glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex composed at least by PIGA, PIGC, PIGH, PIGP, PIGQ, PIGY and DPM2. Interacts directly with PIGA; this interaction regulates glycosylphosphatidylinositol-N-acetylglucosaminyltransferase activity. Does not interact with Ras proteins.
Subcellular location. Endoplasmic reticulum membrane.
Disease relevance. Hyperphosphatasia with impaired intellectual development syndrome 6 (HPMRS6) [MIM:616809] An autosomal recessive, multisystem disorder characterized by severe developmental delay, dysmorphism, seizures, cataracts, and early death in some patients. The disease is caused by variants affecting the gene represented in this entry.
Pathway. Glycolipid biosynthesis; glycosylphosphatidylinositol-anchor biosynthesis.
Miscellaneous. PREY and PIGY, 2 apparently unrelated proteins, are respectively the product of an upstream and a downstream ORF contained in a single bicistronic transcript.
RefSeq proteins (1): NP_001036081* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR029164 | PIG-Y | Family |
Pfam: PF15159
Enzyme classification (BRENDA):
- EC 2.4.1.198 — phosphatidylinositol N-acetylglucosaminyltransferase (BRENDA: 42 organisms, 12 substrates, 7 inhibitors, 0 Km, 0 kcat entries)
UniProt features (7 total): topological domain 3, transmembrane region 2, chain 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q3MUY2-F1 | 89.02 | 0.58 |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-162710 | Synthesis of glycosylphosphatidylinositol (GPI) |
MSigDB gene sets: 317 (showing top):
GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, GOBP_PHOSPHATIDYLINOSITOL_METABOLIC_PROCESS, GOBP_GLYCOLIPID_BIOSYNTHETIC_PROCESS, REACTOME_SYNTHESIS_OF_GLYCOSYLPHOSPHATIDYLINOSITOL_GPI, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_PHOSPHOLIPID_BIOSYNTHETIC_PROCESS, GOBP_GLYCEROLIPID_METABOLIC_PROCESS, GOBP_PROTEIN_MATURATION, GOBP_CARBOHYDRATE_DERIVATIVE_BIOSYNTHETIC_PROCESS, KEGG_GLYCOSYLPHOSPHATIDYLINOSITOL_GPI_ANCHOR_BIOSYNTHESIS, GOBP_GLYCEROLIPID_BIOSYNTHETIC_PROCESS, GOBP_GLYCEROPHOSPHOLIPID_METABOLIC_PROCESS, GOZGIT_ESR1_TARGETS_UP
GO Biological Process (1): GPI anchor biosynthetic process (GO:0006506)
GO Molecular Function (2): protein binding (GO:0005515), phosphatidylinositol N-acetylglucosaminyltransferase activity (GO:0017176)
GO Cellular Component (5): glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (GO:0000506), endoplasmic reticulum membrane (GO:0005789), plasma membrane (GO:0005886), endoplasmic reticulum (GO:0005783), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Post-translational modification: synthesis of GPI-anchored proteins | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| GPI anchor metabolic process | 1 |
| glycolipid biosynthetic process | 1 |
| glycerophospholipid biosynthetic process | 1 |
| GPI anchored protein biosynthesis | 1 |
| binding | 1 |
| acetylglucosaminyltransferase activity | 1 |
| endoplasmic reticulum membrane | 1 |
| membrane protein complex | 1 |
| endoplasmic reticulum protein-containing complex | 1 |
| transferase complex | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
454 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PIGY | PIGH | Q14442 | 999 |
| PIGY | PIGC | Q92535 | 999 |
| PIGY | PIGP | P57054 | 999 |
| PIGY | PIGQ | Q9BRB3 | 998 |
| PIGY | PIGA | P37287 | 995 |
| PIGY | DPM2 | O94777 | 985 |
| PIGY | PYURF | Q96I23 | 911 |
| PIGY | PIGV | Q9NUD9 | 804 |
| PIGY | PIGW | Q7Z7B1 | 788 |
| PIGY | PIGL | Q9Y2B2 | 783 |
| PIGY | PIGO | Q8TEQ8 | 774 |
| PIGY | PGAP2 | Q9UHJ9 | 760 |
| PIGY | PIGM | Q9H3S5 | 741 |
| PIGY | PIGZ | Q86VD9 | 716 |
| PIGY | PIGB | Q92521 | 712 |
| PIGY | PGAP3 | Q96FM1 | 712 |
IntAct
15 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PIGA | PIGP | psi-mi:“MI:0914”(association) | 0.710 |
| PIGA | DPM2 | psi-mi:“MI:0914”(association) | 0.660 |
| ERG28 | PIGY | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM72 | PIGY | psi-mi:“MI:0915”(physical association) | 0.560 |
| PIGY | ERG28 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PIGA | PIGY | psi-mi:“MI:0915”(physical association) | 0.560 |
| PIGA | PIGY | psi-mi:“MI:0914”(association) | 0.560 |
| ABCB4 | PIGY | psi-mi:“MI:0915”(physical association) | 0.370 |
| RCC1L | PRORP | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM72 | PIGY | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (5): PIGY (Biochemical Activity), PIGY (Two-hybrid), PIGY (Two-hybrid), PIGY (Affinity Capture-MS), PIGY (Two-hybrid)
ESM2 similar proteins: A0A318, A2BQ51, A2BVN3, A2C127, A2CAP6, A3PBU4, A5GJP1, A5GUE6, B0C6G0, B0JWY5, B1WNP9, B1X3F0, B2J0I9, B7K767, C0H465, O28694, O31933, O96808, P0C1N9, P0C1P0, P0C1P1, P0C8E5, P0C8E6, P17828, P17831, P17832, P17833, P27372, P48273, P62651, Q06GP0, Q0I8V6, Q10W93, Q2JJ68, Q2JRP9, Q31BW4, Q31R74, Q3AKY6, Q3AYG7, Q3MBD4
Diamond homologs: P0C1N9, P0C1P0, P0C1P1, Q3MUY2
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
21 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 0 |
| Uncertain significance | 12 |
| Likely benign | 4 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 222024 | NM_001042616.3(PIGY):c.137T>C (p.Leu46Pro) | Pathogenic |
| 222025 | NC_000004.12:g.88523797C>T | Pathogenic |
| 993284 | NM_032906.5(PYURF):c.289_290dup (p.Gln97fs) | Pathogenic |
SpliceAI
236 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:88522025:CATAT:C | acceptor_gain | 1.0000 |
| 4:88522027:TAT:T | acceptor_gain | 1.0000 |
| 4:88522030:C:CC | acceptor_gain | 1.0000 |
| 4:88522035:G:GC | acceptor_gain | 1.0000 |
| 4:88523495:TACCT:T | donor_loss | 1.0000 |
| 4:88523496:ACCTG:A | donor_loss | 1.0000 |
| 4:88523497:C:CG | donor_loss | 1.0000 |
| 4:88522028:AT:A | acceptor_gain | 0.9900 |
| 4:88522029:TCTGA:T | acceptor_loss | 0.9900 |
| 4:88522030:C:A | acceptor_loss | 0.9900 |
| 4:88522031:T:A | acceptor_loss | 0.9900 |
| 4:88522035:G:C | acceptor_gain | 0.9900 |
| 4:88522899:T:C | donor_gain | 0.9900 |
| 4:88523496:A:AC | donor_gain | 0.9900 |
| 4:88523497:C:CC | donor_gain | 0.9900 |
| 4:88522888:A:AC | donor_gain | 0.9700 |
| 4:88522889:C:CC | donor_gain | 0.9700 |
| 4:88522026:ATAT:A | acceptor_gain | 0.9600 |
| 4:88523508:T:TA | donor_gain | 0.9400 |
| 4:88522105:C:CT | donor_gain | 0.9300 |
| 4:88522881:CAACA:C | donor_gain | 0.9200 |
| 4:88522882:AACAA:A | donor_gain | 0.9200 |
| 4:88522860:TTC:T | donor_gain | 0.8900 |
| 4:88522890:T:C | donor_gain | 0.8900 |
| 4:88522856:CACTT:C | donor_gain | 0.8200 |
| 4:88522861:T:A | donor_gain | 0.8200 |
| 4:88522884:CA:C | donor_gain | 0.8100 |
| 4:88522885:AA:A | donor_gain | 0.8100 |
| 4:88522816:G:C | donor_gain | 0.8000 |
| 4:88522980:TAGGG:T | donor_gain | 0.8000 |
AlphaMissense
456 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:88521586:G:C | F68L | 0.988 |
| 4:88521586:G:T | F68L | 0.988 |
| 4:88521588:A:G | F68L | 0.988 |
| 4:88521587:A:G | F68S | 0.977 |
| 4:88521577:A:C | N71K | 0.976 |
| 4:88521577:A:T | N71K | 0.976 |
| 4:88521588:A:T | F68I | 0.976 |
| 4:88521638:A:T | I51K | 0.974 |
| 4:88521592:T:A | K66N | 0.973 |
| 4:88521592:T:G | K66N | 0.973 |
| 4:88521619:G:C | F57L | 0.969 |
| 4:88521619:G:T | F57L | 0.969 |
| 4:88521621:A:G | F57L | 0.969 |
| 4:88521600:C:G | G64R | 0.965 |
| 4:88521588:A:C | F68V | 0.963 |
| 4:88521638:A:C | I51R | 0.963 |
| 4:88521587:A:C | F68C | 0.961 |
| 4:88521664:A:C | F42L | 0.961 |
| 4:88521664:A:T | F42L | 0.961 |
| 4:88521666:A:G | F42L | 0.961 |
| 4:88521653:A:T | L46H | 0.956 |
| 4:88521658:G:C | S44R | 0.954 |
| 4:88521658:G:T | S44R | 0.954 |
| 4:88521660:T:G | S44R | 0.954 |
| 4:88521593:T:A | K66I | 0.953 |
| 4:88521735:C:G | G19R | 0.953 |
| 4:88521735:C:T | G19R | 0.953 |
| 4:88521644:A:T | I49N | 0.949 |
| 4:88521622:G:C | F56L | 0.948 |
| 4:88521622:G:T | F56L | 0.948 |
dbSNP variants (sampled 300 via entrez): RS1000114967 (4:88524116 A>G), RS1001758000 (4:88522465 G>A), RS1002219622 (4:88520843 G>C), RS1002830216 (4:88524919 T>C), RS1002909692 (4:88523771 G>C,T), RS1002960516 (4:88524597 G>A), RS1004315038 (4:88520856 C>T), RS1004791959 (4:88524244 G>T), RS1005938437 (4:88524735 G>A,C), RS1006383836 (4:88525002 G>GT), RS1007645802 (4:88523822 C>G,T), RS1007950891 (4:88521933 C>A), RS1008028290 (4:88523657 C>A,T), RS1008397665 (4:88522297 T>C), RS1009023330 (4:88524010 T>C)
Disease associations
OMIM: gene MIM:610662 | disease phenotypes: MIM:616809
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| hyperphosphatasia with intellectual disability syndrome 6 | Strong | Autosomal recessive |
| hyperphosphatasia-intellectual disability syndrome | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| hyperphosphatasia with intellectual disability syndrome 6 | Limited | AR |
Mondo (3): hyperphosphatasia with intellectual disability syndrome 6 (MONDO:0014780), mitochondrial disease (MONDO:0044970), hyperphosphatasia-intellectual disability syndrome (MONDO:0016596)
Orphanet (2): Hyperphosphatasia-intellectual disability syndrome (Orphanet:247262), Mitochondrial disease (Orphanet:68380)
HPO phenotypes
99 total (30 of 99 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000023 | Inguinal hernia |
| HP:0000126 | Hydronephrosis |
| HP:0000193 | Bifid uvula |
| HP:0000218 | High palate |
| HP:0000248 | Brachycephaly |
| HP:0000280 | Coarse facial features |
| HP:0000286 | Epicanthus |
| HP:0000289 | Broad philtrum |
| HP:0000303 | Mandibular prognathia |
| HP:0000311 | Round face |
| HP:0000316 | Hypertelorism |
| HP:0000322 | Short philtrum |
| HP:0000341 | Narrow forehead |
| HP:0000347 | Micrognathia |
| HP:0000378 | Cupped ear |
| HP:0000391 | Thickened helices |
| HP:0000414 | Bulbous nose |
| HP:0000426 | Prominent nasal bridge |
| HP:0000431 | Wide nasal bridge |
| HP:0000463 | Anteverted nares |
| HP:0000470 | Short neck |
| HP:0000490 | Deeply set eye |
| HP:0000505 | Visual impairment |
| HP:0000519 | Developmental cataract |
| HP:0000540 | Hypermetropia |
| HP:0000565 | Esotropia |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000594 | Shallow anterior chamber |
| HP:0000637 | Long palpebral fissure |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001647_7 | Bipolar disorder | 7.000000e-06 |
| GCST005956_59 | Waist-to-hip ratio adjusted for BMI | 5.000000e-08 |
| GCST005957_14 | Waist-to-hip ratio adjusted for BMI (age <50) | 2.000000e-06 |
| GCST005962_35 | Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test) | 2.000000e-08 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0008007 | age at assessment |
| EFO:0008343 | sex interaction measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
13 total (human), top 13 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| arsenite | affects binding, increases reaction | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| chloropicrin | affects expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Gold | decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Valproic Acid | increases expression | 1 |
| Cadmium Chloride | increases abundance, increases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
| Lactic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
103 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03351998 | PHASE4 | COMPLETED | Impact of Statin Therapy on Muscle Mitochondrial Function and Aerobic Capacity |
| NCT00432744 | PHASE3 | COMPLETED | Phase III Trial of Coenzyme Q10 in Mitochondrial Disease |
| NCT05162768 | PHASE3 | COMPLETED | Study to Evaluate Efficacy and Safety of Elamipretide in Subjects With Primary Mitochondrial Disease From Nuclear DNA Mutations (nPMD) |
| NCT06451757 | PHASE3 | RECRUITING | KHENERFIN Study: A Trial to Evaluate the Efficacy and Safety of Sonlicromanol in Primary Mitochondrial Diseases |
| NCT02398201 | PHASE2 | COMPLETED | A Study of Bezafibrate in Mitochondrial Myopathy |
| NCT02473445 | PHASE2 | TERMINATED | A Long-term Extension of Study RP103-MITO-001 (NCT02023866) to Assess Cysteamine Bitartrate Delayed-release Capsules (RP103) in Children With Inherited Mitochondrial Disease |
| NCT02500628 | PHASE2 | COMPLETED | Heart Rate Variability in Response to Metformin Challenge |
| NCT02805790 | PHASE2 | COMPLETED | Safety, Tolerability, Efficacy of MTP-131 for Treatment of Mitochondrial Disease in Subjects From the MMPOWER Study |
| NCT02909400 | PHASE2 | COMPLETED | The KHENERGY Study |
| NCT02976038 | PHASE2 | TERMINATED | Open-Label Extension Trial to Characterize the Long-term Safety and Tolerability of Elamipretide in Subjects With Genetically Confirmed Primary Mitochondrial Myopathy (PMM) |
| NCT03177798 | PHASE2 | COMPLETED | Mitochondria and Chronic Kidney Disease |
| NCT03866954 | PHASE2 | WITHDRAWN | Trial of Erythrocyte Encapsulated Thymidine Phosphorylase In Mitochondrial Neurogastrointestinal Encephalomyopathy |
| NCT04165239 | PHASE2 | COMPLETED | The KHENERGYZE Study |
| NCT04604548 | PHASE2 | COMPLETED | The KHENEREXT Study |
| NCT04802707 | PHASE2 | RECRUITING | Deoxynucleosides Pyrimidines as Treatment for Mitochondrial Depletion Syndrome |
| NCT04846036 | PHASE2 | SUSPENDED | The KHENERGYC Study |
| NCT05650229 | PHASE2 | RECRUITING | Efficacy of KL1333 in Adult Patients With Primary Mitochondrial Disease |
| NCT05972954 | PHASE2 | COMPLETED | OMT-28 in Patients With Primary Mitochondrial Disease (PMD) (PMD-OPTION) |
| NCT06017869 | PHASE2 | RECRUITING | Evaluate the Safety and Therapeutic Effects of a Single Intravenous Infusion (IV) of Autologous CD34+ Cells Enriched With Allogenic Placenta-derived Mitochondria in Patients With a Diagnosis of Pearson Syndrome (PS) |
| NCT07514338 | PHASE2 | NOT_YET_RECRUITING | Open Label Extension to Assess Long Term Safety and Efficacy of KL1333 in Patients With Primary Mitochondrial Disease |
| NCT00060515 | PHASE1 | TERMINATED | RG2133 (2’,3’,5’-Tri-O-Acetyluridine) in Mitochondrial Disease |
| NCT02348125 | PHASE1 | UNKNOWN | Does Clinical Treatment of Mitochondrial Dysfunction Impact Autism Spectrum Disorder (ASD)? |
| NCT02544217 | PHASE1 | COMPLETED | A Dose-escalating Clinical Trial With KH176 |
| NCT03888716 | PHASE1 | COMPLETED | A Phase Ia/Ib, SAD and MAD Study of of KL1333 in Healthy Subjects and Patients With Primary Mitochondrial Disease |
| NCT04086329 | PHASE1 | RECRUITING | Validation of Oxygen Nanosensor in Mitochondrial Myopathy |
| NCT04643249 | PHASE1 | COMPLETED | Drug-drug Interaction Study of KL1333 in Healthy Subjects |
| NCT05241262 | PHASE1 | RECRUITING | Study of N-acetylcysteine in the Treatment of Patients With the m.3243A>G Mutation and Low Brain Glutathione Levels |
| NCT05569122 | PHASE1 | RECRUITING | Applying pGz in Mitochondrial Disease |
| NCT06819683 | PHASE1 | RECRUITING | Validation of Nanosensor Oxygen Measurement |
| NCT07258667 | PHASE1 | NOT_YET_RECRUITING | Pilot Study of the Efficacy of Nicotinamide (Vitamin B3) in Leber’s Hereditary Optic Neuropathy |
| NCT04378075 | PHASE2/PHASE3 | TERMINATED | A Study to Evaluate Efficacy and Safety of Vatiquinone for Treating Mitochondrial Disease in Participants With Refractory Epilepsy |
| NCT01642056 | PHASE1/PHASE2 | COMPLETED | EPI-743 for Metabolism or Mitochondrial Disorders |
| NCT03384420 | PHASE1/PHASE2 | COMPLETED | A Study to Evaluate the Safety and Therapeutic Effects of Transplantation of MNV-BM-BLD in Pediatric Patients With Pearson Syndrome |
| NCT06051448 | PHASE1/PHASE2 | COMPLETED | Promoting Resilience in Stress Management (PRISM) and Clinical-focused Narrative (CFN) Pilot in Adults With Primary Mitochondrial Disease (PMD). |
| NCT01252979 | EARLY_PHASE1 | COMPLETED | Ketones & Mitochondrial Heteroplasmy |
| NCT00786539 | Not specified | COMPLETED | Mitochondria Inborn Errors of Metabolism and ANT Defects in Mitochondria Diseases |
| NCT00829270 | Not specified | COMPLETED | Economic and Medical Evaluation of the Whole Mitochondrial DNA Screening by Surveyor and Mitochips Techniques |
| NCT00831948 | Not specified | UNKNOWN | Identification of Large-Scale Mutations of POLG Gene by QMPSF in Patients With Mitochondrial DNA Instability. |
| NCT01001585 | Not specified | TERMINATED | Anesthetic Effects in Mitochondrial Disease |
| NCT01148550 | Not specified | SUSPENDED | Longitudinal Study of Mitochondrial Hepatopathies |
Related Atlas pages
- Associated diseases: hyperphosphatasia with intellectual disability syndrome 6, hyperphosphatasia-intellectual disability syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hyperphosphatasia with intellectual disability syndrome 6, hyperphosphatasia-intellectual disability syndrome, mitochondrial disease