PISD
gene geneOn this page
Also known as dJ858B16.2PSDC
Summary
PISD (phosphatidylserine decarboxylase, HGNC:8999) is a protein-coding gene on chromosome 22q12.2, encoding Phosphatidylserine decarboxylase proenzyme, mitochondrial (Q9UG56). Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
The protein encoded by this gene catalyzes the conversion of phosphatidylserine to phosphatidylethanolamine in the inner mitochondrial membrane. The encoded protein is active in phospholipid metabolism and interorganelle trafficking of phosphatidylserine.
Source: NCBI Gene 23761 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Liberfarb syndrome (Strong, GenCC)
- Clinical variants (ClinVar): 195 total — 5 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 13
- MANE Select transcript:
NM_001326411
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:8999 |
| Approved symbol | PISD |
| Name | phosphatidylserine decarboxylase |
| Location | 22q12.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | dJ858B16.2, PSDC |
| Ensembl gene | ENSG00000241878 |
| Ensembl biotype | protein_coding |
| OMIM | 612770 |
| Entrez | 23761 |
Gene structure
Transcript identifiers
Ensembl transcripts: 24 — 16 protein_coding, 4 protein_coding_CDS_not_defined, 3 retained_intron, 1 nonsense_mediated_decay
ENST00000266095, ENST00000382151, ENST00000397500, ENST00000422020, ENST00000429683, ENST00000431201, ENST00000435900, ENST00000437808, ENST00000439502, ENST00000442379, ENST00000460723, ENST00000473770, ENST00000474017, ENST00000478893, ENST00000479851, ENST00000486675, ENST00000491342, ENST00000892604, ENST00000892605, ENST00000930689, ENST00000930690, ENST00000930691, ENST00000930692, ENST00000972531
RefSeq mRNA: 13 — MANE Select: NM_001326411
NM_001326411, NM_001326412, NM_001326413, NM_001326414, NM_001326415, NM_001326416, NM_001326417, NM_001326418, NM_001326419, NM_001326420, NM_001326421, NM_014338, NM_178022
CCDS: CCDS13899, CCDS87016
Canonical transcript exons
ENST00000439502 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001927930 | 31662144 | 31662215 |
| ENSE00003459813 | 31621649 | 31621885 |
| ENSE00003505682 | 31620553 | 31620713 |
| ENSE00003507246 | 31620996 | 31621142 |
| ENSE00003518485 | 31621334 | 31621472 |
| ENSE00003524616 | 31618491 | 31619836 |
| ENSE00003647092 | 31648101 | 31648276 |
| ENSE00003661475 | 31650699 | 31650778 |
Expression profiles
Bgee: expression breadth ubiquitous, 276 present calls, max score 98.77.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 24.2193 / max 217.0966, expressed in 1817 samples.
FANTOM5 promoters (12 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 193725 | 12.3737 | 1792 |
| 193717 | 4.8950 | 1532 |
| 193721 | 2.2674 | 439 |
| 193720 | 1.2556 | 268 |
| 193713 | 0.9115 | 181 |
| 193716 | 0.8020 | 486 |
| 193715 | 0.7825 | 335 |
| 193718 | 0.5486 | 200 |
| 193719 | 0.2906 | 82 |
| 193726 | 0.0489 | 19 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cerebellar hemisphere | UBERON:0002245 | 98.77 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.75 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 98.71 | gold quality |
| cerebellum | UBERON:0002037 | 98.29 | gold quality |
| paraflocculus | UBERON:0005351 | 97.58 | gold quality |
| cerebellar vermis | UBERON:0004720 | 96.98 | gold quality |
| granulocyte | CL:0000094 | 95.69 | gold quality |
| metanephros cortex | UBERON:0010533 | 95.39 | gold quality |
| blood | UBERON:0000178 | 95.27 | gold quality |
| monocyte | CL:0000576 | 94.97 | gold quality |
| mononuclear cell | CL:0000842 | 94.52 | gold quality |
| leukocyte | CL:0000738 | 94.49 | gold quality |
| right frontal lobe | UBERON:0002810 | 93.87 | gold quality |
| omental fat pad | UBERON:0010414 | 93.78 | gold quality |
| peritoneum | UBERON:0002358 | 93.77 | gold quality |
| spleen | UBERON:0002106 | 93.72 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 93.60 | gold quality |
| pituitary gland | UBERON:0000007 | 93.52 | gold quality |
| left adrenal gland | UBERON:0001234 | 93.44 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 93.43 | gold quality |
| adenohypophysis | UBERON:0002196 | 93.42 | gold quality |
| right testis | UBERON:0004534 | 93.40 | gold quality |
| left testis | UBERON:0004533 | 93.37 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 93.34 | gold quality |
| right adrenal gland | UBERON:0001233 | 93.33 | gold quality |
| left uterine tube | UBERON:0001303 | 93.13 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 92.87 | gold quality |
| adrenal cortex | UBERON:0001235 | 92.83 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 92.69 | gold quality |
| stromal cell of endometrium | CL:0002255 | 92.59 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 8.66 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 3)
- High-throughput mass spectrometry screening for inhibitors of PISD is reported. (PMID:17478478)
- the biallelic hypomorphic PISD variant p.(Cys266Tyr) is associated with a novel Spondyloepimetaphyseal dysplasias form. (PMID:30488656)
- Conditional targeting of phosphatidylserine decarboxylase to lipid droplets. (PMID:33593792)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | pisd | ENSDARG00000052462 |
| mus_musculus | Pisd | ENSMUSG00000023452 |
| ENSMUSG00000095041 | ||
| rattus_norvegicus | Pisd | ENSRNOG00000018319 |
| drosophila_melanogaster | Pisd | FBGN0026576 |
| caenorhabditis_elegans | WBGENE00015159 |
Protein
Protein identifiers
Phosphatidylserine decarboxylase proenzyme, mitochondrial — Q9UG56 (reviewed: Q9UG56)
All UniProt accessions (7): Q9UG56, B1AKM6, B1AKM8, B1AKM9, B1AKN0, F8WCS6, H0Y7P7
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine. May be involved in lipid droplet biogenesis at the endoplasmic reticulum membrane.
Subunit / interactions. Heterodimer of a large membrane-associated beta subunit and a small pyruvoyl-containing alpha subunit.
Subcellular location. Mitochondrion inner membrane Mitochondrion inner membrane. Cytoplasm Mitochondrion inner membrane Mitochondrion inner membrane. Lipid droplet.
Post-translational modifications. Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The autoendoproteolytic cleavage occurs by a canonical serine protease mechanism, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl prosthetic group on the alpha chain. During this reaction, the Ser that is part of the protease active site of the proenzyme becomes the pyruvoyl prosthetic group, which constitutes an essential element of the active site of the mature decarboxylase.
Disease relevance. Liberfarb syndrome (LIBF) [MIM:618889] An autosomal recessive multisystem disorder affecting the eye, ear, bone, and brain development. Clinical features include early-onset retinal degeneration, congenital cataracts, sensorineural hearing loss, microcephaly, intellectual disability, white matter changes, mild facial dysmorphism, and skeletal dysplasia with platyspondyly, scoliosis and short stature. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 1 pyruvoyl group covalently per subunit.
Pathway. Phospholipid metabolism; phosphatidylethanolamine biosynthesis.
Similarity. Belongs to the phosphatidylserine decarboxylase family. PSD-B subfamily. Eukaryotic type I sub-subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UG56-3 | 1, PISD-M | yes |
| Q9UG56-2 | 2, PISD-LD |
RefSeq proteins (13): NP_001313340, NP_001313341, NP_001313342, NP_001313343, NP_001313344, NP_001313345, NP_001313346, NP_001313347, NP_001313348, NP_001313349, NP_001313350, NP_055153, NP_821141 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003817 | PS_Dcarbxylase | Family |
| IPR033177 | PSD-B | Family |
| IPR033661 | PSD_type1_euk | Family |
Pfam: PF02666
Catalyzed reactions (Rhea), 1 shown:
- a 1,2-diacyl-sn-glycero-3-phospho-L-serine + H(+) = a 1,2-diacyl-sn-glycero-3-phosphoethanolamine + CO2 (RHEA:20828)
UniProt features (18 total): active site 4, chain 3, sequence variant 2, topological domain 2, transit peptide 1, site 1, modified residue 1, splice variant 1, mutagenesis site 1, region of interest 1, transmembrane region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UG56-F1 | 78.13 | 0.38 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (5): 378 (schiff-base intermediate with substrate; via pyruvic acid; for decarboxylase activity); 377–378 (cleavage (non-hydrolytic); by autocatalysis); 191 (charge relay system; for autoendoproteolytic cleavage activity); 267 (charge relay system; for autoendoproteolytic cleavage activity); 378 (charge relay system; for autoendoproteolytic cleavage activity)
Post-translational modifications (1): 378
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 378 | loss of autocatalytic processing. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-1483213 | Synthesis of PE |
MSigDB gene sets: 270 (showing top):
GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_PHOSPHOLIPID_BIOSYNTHETIC_PROCESS, GOBP_GLYCEROLIPID_METABOLIC_PROCESS, GOBP_REGULATION_OF_MITOCHONDRION_ORGANIZATION, MISSIAGLIA_REGULATED_BY_METHYLATION_UP, GOBP_PROTEIN_MATURATION, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1, GOCC_MITOCHONDRIAL_ENVELOPE, GOBP_ORGANELLE_ASSEMBLY, GOBP_GLYCEROLIPID_BIOSYNTHETIC_PROCESS
GO Biological Process (7): phosphatidylethanolamine biosynthetic process (GO:0006646), regulation of mitochondrion organization (GO:0010821), protein autoprocessing (GO:0016540), mitochondrial protein catabolic process (GO:0035694), lipid droplet formation (GO:0140042), lipid metabolic process (GO:0006629), phospholipid biosynthetic process (GO:0008654)
GO Molecular Function (4): phosphatidylserine decarboxylase activity (GO:0004609), protein binding (GO:0005515), lyase activity (GO:0016829), carboxy-lyase activity (GO:0016831)
GO Cellular Component (8): nucleus (GO:0005634), mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), Golgi apparatus (GO:0005794), lipid droplet (GO:0005811), cytosol (GO:0005829), cytoplasm (GO:0005737), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Glycerophospholipid biosynthesis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| intracellular membrane-bounded organelle | 3 |
| cytoplasm | 3 |
| cellular anatomical structure | 3 |
| mitochondrion organization | 2 |
| phosphatidylethanolamine metabolic process | 1 |
| glycerophospholipid biosynthetic process | 1 |
| regulation of organelle organization | 1 |
| protein processing | 1 |
| mitochondrion | 1 |
| protein catabolic process | 1 |
| lipid storage | 1 |
| lipid droplet organization | 1 |
| membraneless organelle assembly | 1 |
| primary metabolic process | 1 |
| phospholipid metabolic process | 1 |
| lipid biosynthetic process | 1 |
| organophosphate biosynthetic process | 1 |
| carboxy-lyase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| carbon-carbon lyase activity | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| endomembrane system | 1 |
| intracellular membraneless organelle | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1982 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PISD | PCYT2 | Q99447 | 984 |
| PISD | PTDSS2 | Q9BVG9 | 792 |
| PISD | PTDSS1 | P48651 | 792 |
| PISD | PEMT | Q9UBM1 | 775 |
| PISD | GLB1 | P16278 | 773 |
| PISD | CEPT1 | Q9Y6K0 | 715 |
| PISD | ETNK2 | Q9NVF9 | 662 |
| PISD | CDIPT | O14735 | 628 |
| PISD | SELENOI | Q9C0D9 | 626 |
| PISD | CHKA | P35790 | 623 |
| PISD | ETNK1 | Q9HBU6 | 621 |
| PISD | CHKB | Q9Y259 | 619 |
| PISD | PSD | A5PKW4 | 602 |
| PISD | PSD2 | Q9BQI7 | 593 |
| PISD | CHPT1 | Q8WUD6 | 572 |
IntAct
61 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| WDR19 | TULP3 | psi-mi:“MI:0914”(association) | 0.860 |
| STK16 | UNC119B | psi-mi:“MI:0914”(association) | 0.530 |
| CXCR4 | FANCA | psi-mi:“MI:0914”(association) | 0.530 |
| IFT140 | ACSL3 | psi-mi:“MI:0914”(association) | 0.510 |
| CFTR | PISD | psi-mi:“MI:0915”(physical association) | 0.370 |
| RIPK4 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| HSCB | RBP5 | psi-mi:“MI:0914”(association) | 0.350 |
| LRRK2 | psi-mi:“MI:0914”(association) | 0.350 | |
| NS3 | C15orf61 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM223 | psi-mi:“MI:0914”(association) | 0.350 | |
| DNAJA2 | DENND11 | psi-mi:“MI:0914”(association) | 0.350 |
| PISD | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| C1QA | MANBA | psi-mi:“MI:0914”(association) | 0.350 |
| GPR182 | SLC12A8 | psi-mi:“MI:0914”(association) | 0.350 |
| PCDHB3 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| CLEC4E | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| HLA-C | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| PCDHB7 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| BRICD5 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| SLC22A9 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| HLA-DQA1 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| LDLRAD1 | ZNF316 | psi-mi:“MI:0914”(association) | 0.350 |
| MFSD4A | UBXN8 | psi-mi:“MI:0914”(association) | 0.350 |
| AQP3 | UBXN8 | psi-mi:“MI:0914”(association) | 0.350 |
| NUBP2 | TK2 | psi-mi:“MI:0914”(association) | 0.350 |
| HYAL1 | CDIPT | psi-mi:“MI:0914”(association) | 0.350 |
| VSIG4 | TNFRSF10B | psi-mi:“MI:0914”(association) | 0.350 |
| BSG | TNPO2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (79): PISD (Affinity Capture-MS), PISD (Affinity Capture-MS), IFT140 (Affinity Capture-MS), WDR19 (Affinity Capture-MS), PISD (Affinity Capture-RNA), PISD (Affinity Capture-MS), PISD (Affinity Capture-MS), PISD (Affinity Capture-MS), PISD (Affinity Capture-RNA), PISD (Affinity Capture-MS), DHX29 (Two-hybrid), DAGLB (Two-hybrid), PISD (Two-hybrid), PISD (Affinity Capture-MS), PISD (Affinity Capture-MS)
ESM2 similar proteins: A0A3L7I2I8, B1WC37, D2XV59, O00178, O08582, O60733, O75648, P08760, P11029, P11497, P42694, P97570, P97819, Q05B63, Q13085, Q14749, Q28559, Q28DS0, Q29555, Q4R4U1, Q503J2, Q58DC5, Q5I0K3, Q5R5F8, Q5R8I8, Q5R962, Q5RB73, Q5SWU9, Q5ZKW0, Q6DC64, Q6DFV5, Q6IS24, Q6NYU2, Q6P4H8, Q6YJI5, Q7Z4G4, Q80YV4, Q8CIW5, Q8JGT5, Q8N0X4
Diamond homologs: A0Q562, A4IZN0, A7NAF0, B0TZM7, B2SFB2, B2UVC1, B3L2V1, B6JNM7, D3ZAW2, O25911, P27465, P39006, Q0BN99, Q10949, Q14J65, Q1CRQ1, Q1PCQ8, Q2A4Y0, Q58DH2, Q5NHR3, Q5R8I8, Q8BSF4, Q9GPP8, Q9UG56, Q9UTB5, Q9ZJN0, A1U4D6, A3D015, A4G529, A4VR22, A4XPX3, A5IIH5, A5W9U4, A6TH77, A6VD70, A6WSW1, A7ZV31, A8A7Q7, A9KEZ8, A9L3W8
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
195 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 5 |
| Likely pathogenic | 2 |
| Uncertain significance | 95 |
| Likely benign | 69 |
| Benign | 11 |
Top pathogenic / likely-pathogenic (7)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1470810 | NM_001326411.2(PISD):c.337dup (p.Ser113fs) | Pathogenic |
| 2807239 | NM_001326411.2(PISD):c.643del (p.Leu215fs) | Pathogenic |
| 3625651 | NM_001326411.2(PISD):c.175C>T (p.Arg59Ter) | Pathogenic |
| 4802627 | NM_001326411.2(PISD):c.51_52insT (p.Pro18fs) | Pathogenic |
| 694325 | NM_001326411.2(PISD):c.1006-12_1006-3del | Pathogenic |
| 2696718 | NM_001326411.2(PISD):c.845-2A>G | Likely pathogenic |
| 2700183 | NM_001326411.2(PISD):c.698-2A>G | Likely pathogenic |
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
2649 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 22:31619720:G:C | F374L | 0.999 |
| 22:31619720:G:T | F374L | 0.999 |
| 22:31619721:A:G | F374S | 0.999 |
| 22:31619722:A:G | F374L | 0.999 |
| 22:31620599:G:T | A320D | 0.999 |
| 22:31620609:A:G | S317P | 0.999 |
| 22:31620647:C:G | R304P | 0.999 |
| 22:31620650:T:A | E303V | 0.999 |
| 22:31621007:C:G | R278P | 0.999 |
| 22:31621010:C:G | R277P | 0.999 |
| 22:31621026:A:G | W272R | 0.999 |
| 22:31621026:A:T | W272R | 0.999 |
| 22:31621050:G:C | H264D | 0.999 |
| 22:31621067:A:G | L258P | 0.999 |
| 22:31621456:C:T | G192E | 0.999 |
| 22:31621465:G:T | P189Q | 0.999 |
| 22:31621467:G:C | S188R | 0.999 |
| 22:31621467:G:T | S188R | 0.999 |
| 22:31621469:T:G | S188R | 0.999 |
| 22:31621696:G:T | R171S | 0.999 |
| 22:31619697:A:G | L382P | 0.998 |
| 22:31619710:A:G | S378P | 0.998 |
| 22:31619713:C:G | G377R | 0.998 |
| 22:31620627:A:G | W311R | 0.998 |
| 22:31620627:A:T | W311R | 0.998 |
| 22:31620632:C:T | G309E | 0.998 |
| 22:31620633:C:A | G309W | 0.998 |
| 22:31621456:C:A | G192V | 0.998 |
| 22:31621457:C:G | G192R | 0.998 |
| 22:31621457:C:T | G192R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000008618 (22:31650325 C>A), RS1000062272 (22:31644966 T>C), RS1000120985 (22:31624089 C>A,G,T), RS1000193756 (22:31650723 G>C), RS1000326244 (22:31661753 A>G), RS1000346713 (22:31632709 G>A), RS1000389755 (22:31618808 C>T), RS1000413619 (22:31644733 C>T), RS1000440339 (22:31627081 G>A), RS1000591210 (22:31662187 G>A,C,T), RS1000761041 (22:31638455 T>G), RS1000940448 (22:31657132 T>C), RS1000989189 (22:31644914 C>G,T), RS1001070561 (22:31651319 C>T), RS1001098053 (22:31632005 G>C)
Disease associations
OMIM: gene MIM:612770 | disease phenotypes: MIM:618889
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Liberfarb syndrome | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Liberfarb syndrome | Moderate | AR |
Mondo (1): Liberfarb syndrome (MONDO:0030045)
Orphanet (1): Short stature-skeletal dysplasia-retinal degeneration-intellectual disability-sensorineural hearing loss syndrome (Orphanet:589442)
HPO phenotypes
13 total (13 of 13 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000252 | Microcephaly |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000543 | Optic disc pallor |
| HP:0000546 | Retinal degeneration |
| HP:0001249 | Intellectual disability |
| HP:0001263 | Global developmental delay |
| HP:0002650 | Scoliosis |
| HP:0002663 | Delayed epiphyseal ossification |
| HP:0004322 | Short stature |
| HP:0007737 | Spicular pigmentation of the retina |
| HP:0007814 | Retinal pigment epithelial mottling |
| HP:0031367 | Metaphyseal striations |
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Decarboxylases
CTD chemical–gene interactions
31 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cadmium Chloride | increases abundance, increases expression, decreases expression | 3 |
| Ozone | affects cotreatment, increases expression, affects expression, increases abundance | 2 |
| Valproic Acid | affects expression, affects methylation, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases methylation | 1 |
| sodium arsenite | increases abundance, increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| celastrol | increases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| ICG 001 | decreases expression | 1 |
| abrine | increases expression | 1 |
| perfluorobutanesulfonic acid | decreases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| Temozolomide | increases expression | 1 |
| Zoledronic Acid | increases expression | 1 |
| Acrolein | affects cotreatment, increases expression | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Arsenic | increases abundance, increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Diazinon | increases methylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Estradiol | affects cotreatment, decreases expression, increases expression | 1 |
| Fluorouracil | affects response to substance | 1 |
| Methotrexate | decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Tetrachlorodibenzodioxin | affects cotreatment, decreases expression | 1 |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E2GS | HAP1 PISD (-) 2 | Cancer cell line | Male |
| CVCL_XR61 | HAP1 PISD (-) 1 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: Liberfarb syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Liberfarb syndrome