PITPNC1
geneOn this page
Also known as RDGBB1RDGBBRDGB-BETA
Summary
PITPNC1 (phosphatidylinositol transfer protein cytoplasmic 1, HGNC:21045) is a protein-coding gene on chromosome 17q24.2, encoding Cytoplasmic phosphatidylinositol transfer protein 1 (Q9UKF7). Catalyzes the transfer of phosphatidylinositol (PI) and phosphatidic acid (PA) between membranes.
This gene encodes a member of the phosphatidylinositol transfer protein family. The encoded cytoplasmic protein plays a role in multiple processes including cell signaling and lipid metabolism by facilitating the transfer of phosphatidylinositol between membrane compartments. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the long arm of chromosome 1.
Source: NCBI Gene 26207 — RefSeq curated summary.
At a glance
- GWAS associations: 15
- Clinical variants (ClinVar): 20 total
- MANE Select transcript:
NM_012417
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:21045 |
| Approved symbol | PITPNC1 |
| Name | phosphatidylinositol transfer protein cytoplasmic 1 |
| Location | 17q24.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RDGBB1, RDGBB, RDGB-BETA |
| Ensembl gene | ENSG00000154217 |
| Ensembl biotype | protein_coding |
| OMIM | 605134 |
| Entrez | 26207 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 4 protein_coding, 2 retained_intron
ENST00000578527, ENST00000580974, ENST00000581322, ENST00000581923, ENST00000584471, ENST00000584554
RefSeq mRNA: 2 — MANE Select: NM_012417
NM_012417, NM_181671
CCDS: CCDS58587, CCDS58588
Canonical transcript exons
ENST00000581322 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002694450 | 67377281 | 67378202 |
| ENSE00002721271 | 67692572 | 67697256 |
| ENSE00002723800 | 67553610 | 67553617 |
| ENSE00003502682 | 67552257 | 67552345 |
| ENSE00003515044 | 67669508 | 67669663 |
| ENSE00003572353 | 67675479 | 67675542 |
| ENSE00003589011 | 67632143 | 67632238 |
| ENSE00003632651 | 67578186 | 67578257 |
| ENSE00003680359 | 67532802 | 67532950 |
Expression profiles
Bgee: expression breadth ubiquitous, 275 present calls, max score 96.76.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 23.5173 / max 231.7990, expressed in 1756 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 162332 | 17.5367 | 1722 |
| 162333 | 2.9544 | 1218 |
| 162334 | 2.1530 | 792 |
| 162331 | 0.4155 | 246 |
| 208355 | 0.3354 | 170 |
| 162336 | 0.1223 | 62 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| endothelial cell | CL:0000115 | 96.76 | gold quality |
| cortical plate | UBERON:0005343 | 95.97 | gold quality |
| cartilage tissue | UBERON:0002418 | 95.34 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 95.07 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 94.46 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 93.77 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 93.62 | gold quality |
| parotid gland | UBERON:0001831 | 93.15 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 92.96 | gold quality |
| islet of Langerhans | UBERON:0000006 | 92.13 | gold quality |
| granulocyte | CL:0000094 | 92.11 | gold quality |
| blood | UBERON:0000178 | 91.68 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 91.63 | gold quality |
| caudate nucleus | UBERON:0001873 | 90.99 | gold quality |
| medial globus pallidus | UBERON:0002477 | 90.98 | gold quality |
| nucleus accumbens | UBERON:0001882 | 90.87 | gold quality |
| entorhinal cortex | UBERON:0002728 | 90.82 | gold quality |
| eye | UBERON:0000970 | 90.78 | gold quality |
| pericardium | UBERON:0002407 | 90.76 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 90.46 | gold quality |
| postcentral gyrus | UBERON:0002581 | 90.42 | gold quality |
| cranial nerve II | UBERON:0000941 | 90.36 | gold quality |
| primary visual cortex | UBERON:0002436 | 90.36 | gold quality |
| pancreas | UBERON:0001264 | 90.22 | gold quality |
| putamen | UBERON:0001874 | 89.95 | gold quality |
| omental fat pad | UBERON:0010414 | 89.70 | gold quality |
| peritoneum | UBERON:0002358 | 89.67 | gold quality |
| globus pallidus | UBERON:0001875 | 89.62 | gold quality |
| leukocyte | CL:0000738 | 89.60 | gold quality |
| body of pancreas | UBERON:0001150 | 89.60 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 3404.12 |
| E-GEOD-180759 | yes | 2720.30 |
| E-HCAD-25 | yes | 2521.95 |
| E-CURD-119 | yes | 26.35 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
167 targeting PITPNC1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
Literature-anchored findings (GeneRIF, showing 9)
- The phosphatidylinositol transfer protein RdgBbeta binds 14-3-3 via its unstructured C-terminus, whereas its lipid-binding domain interacts with the integral membrane protein ATRAP (angiotensin II type I receptor-associated protein). (PMID:21728994)
- Phosphatidylinositol transfer protein, cytoplasmic 1 (PITPNC1) binds and transfers phosphatidic acid (PMID:22822086)
- The most significantly associated SNPs to type 2 diabetes mellitus in this study are expression SNPs to the lymphocyte antigen 75 gene, the ubiquitin-specific peptidase 36 gene, and the phosphatidylinositol transfer protein, cytoplasmic 1 gene. (PMID:22865700)
- PITPNC1-mediated vesicular release. (PMID:26977884)
- We propose that Pitpnc1a-expressing neurons alter behavior via modification of neuro-modulatory IGF that acts on downstream wake-promoting circuits (PMID:30089250)
- Elevated expression of PITPNC1 in gastric cancer is correlated with an advanced clinical stage and a poor prognosis. PITPNC1 promotes anoikis resistance through enhanced fatty acid oxidation, which is regulated by omental adipocytes and consequently facilitates gastric cancer omental metastasis. (PMID:30555557)
- Aberrant overexpression of HOTAIR inhibits abdominal adipogenesis through remodelling of genome-wide DNA methylation and transcription. (PMID:35292404)
- The phospholipid transporter PITPNC1 links KRAS to MYC to prevent autophagy in lung and pancreatic cancer. (PMID:37210549)
- PITPNC1 Suppress CD8[+] T cell immune function and promote radioresistance in rectal cancer by modulating FASN/CD155. (PMID:38291470)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | PITPNC1 | ENSDARG00000099260 |
| rattus_norvegicus | Pitpnc1 | ENSRNOG00000069160 |
Paralogs (5): PITPNM2 (ENSG00000090975), PITPNM3 (ENSG00000091622), PITPNM1 (ENSG00000110697), PITPNA (ENSG00000174238), PITPNB (ENSG00000180957)
Protein
Protein identifiers
Cytoplasmic phosphatidylinositol transfer protein 1 — Q9UKF7 (reviewed: Q9UKF7)
Alternative names: Mammalian rdgB homolog beta, Retinal degeneration B homolog beta
All UniProt accessions (4): Q9UKF7, A0A0C4DGP0, J3QRS7, J3QS95
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the transfer of phosphatidylinositol (PI) and phosphatidic acid (PA) between membranes. Binds PA derived from the phospholipase D signaling pathway and among the cellular PA species, preferably binds to the C16:0/16:1 and C16:1/18:1 PA species. Catalyzes the transfer of phosphatidylinositol between membranes.
Subcellular location. Cytoplasm.
Tissue specificity. Ubiquitously expressed.
Similarity. Belongs to the PtdIns transfer protein family. PI transfer class IIB subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UKF7-1 | 1, sp1 | yes |
| Q9UKF7-2 | 2, sp2 |
RefSeq proteins (2): NP_036549, NP_858057 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001666 | PI_transfer | Family |
| IPR023393 | START-like_dom_sf | Homologous_superfamily |
| IPR055261 | PI_transfer_N | Domain |
Pfam: PF02121
Catalyzed reactions (Rhea), 2 shown:
- a 1,2-diacyl-sn-glycero-3-phosphate(in) = a 1,2-diacyl-sn-glycero-3-phosphate(out) (RHEA:36435)
- a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol)(in) = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol)(out) (RHEA:38691)
UniProt features (13 total): sequence conflict 4, modified residue 4, compositionally biased region 2, chain 1, region of interest 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UKF7-F1 | 83.27 | 0.67 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (4): 119, 270, 274, 278
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 337 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, AHRARNT_01, AGGAAGC_MIR5163P, GCM_MAP4K4, FREAC2_01, MODULE_255, AAGCCAT_MIR135A_MIR135B, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, MODULE_317, RACCACAR_AML_Q6, FOXO4_01, AP2_Q3, GGGTGGRR_PAX4_03, COUP_01
GO Biological Process (4): signal transduction (GO:0007165), phospholipid transport (GO:0015914), lipid transport (GO:0006869), intermembrane lipid transfer (GO:0120009)
GO Molecular Function (8): phosphatidylinositol transfer activity (GO:0008526), phosphatidylinositol binding (GO:0035091), phosphatidic acid binding (GO:0070300), phosphatidylglycerol binding (GO:1901611), phosphatidic acid transfer activity (GO:1990050), protein binding (GO:0005515), obsolete phospholipid transporter activity (GO:0005548), lipid binding (GO:0008289)
GO Cellular Component (4): nucleoplasm (GO:0005654), cytoplasm (GO:0005737), cytosol (GO:0005829), nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| anion binding | 3 |
| cellular anatomical structure | 3 |
| lipid transport | 2 |
| phospholipid binding | 2 |
| binding | 2 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| organophosphate ester transport | 1 |
| transport | 1 |
| lipid localization | 1 |
| membrane organization | 1 |
| phosphatidylinositol binding | 1 |
| lipid transfer activity | 1 |
| phospholipid transfer activity | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
718 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PITPNC1 | RAB1B | Q9H0U4 | 880 |
| PITPNC1 | AGTRAP | Q6RW13 | 602 |
| PITPNC1 | HELZ | P42694 | 537 |
| PITPNC1 | MERTK | Q12866 | 472 |
| PITPNC1 | IGFBP2 | P18065 | 469 |
| PITPNC1 | MYO18A | Q92614 | 438 |
| PITPNC1 | PRKACA | P17612 | 430 |
| PITPNC1 | PRKACB | P22694 | 430 |
| PITPNC1 | PRKACG | P22612 | 429 |
| PITPNC1 | RADIL | Q96JH8 | 395 |
| PITPNC1 | PTPRE | P23469 | 389 |
| PITPNC1 | MYO5B | Q9ULV0 | 374 |
| PITPNC1 | GOLPH3 | Q9H4A6 | 369 |
| PITPNC1 | PITPNA | Q00169 | 361 |
| PITPNC1 | ARFGEF3 | Q5TH69 | 354 |
IntAct
15 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| AGTRAP | PITPNC1 | psi-mi:“MI:0915”(physical association) | 0.760 |
| PITPNC1 | AGTRAP | psi-mi:“MI:0915”(physical association) | 0.760 |
| PITPNC1 | CMTM5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CMTM5 | PITPNC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| YWHAG | SHTN1 | psi-mi:“MI:0914”(association) | 0.560 |
| YWHAB | SHTN1 | psi-mi:“MI:0914”(association) | 0.530 |
| YWHAZ | SHTN1 | psi-mi:“MI:0914”(association) | 0.530 |
| Psmd6 | MIF4GD | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAH | SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (27): AGTRAP (Two-hybrid), CMTM5 (Two-hybrid), AGTRAP (Two-hybrid), PITPNC1 (Affinity Capture-MS), PITPNC1 (Two-hybrid), PITPNC1 (Two-hybrid), PITPNC1 (Two-hybrid), PITPNC1 (Two-hybrid), PITPNC1 (Two-hybrid), PITPNC1 (Two-hybrid), PITPNC1 (Two-hybrid), CACFD1 (Two-hybrid), ANKS6 (Two-hybrid), CMTM5 (Two-hybrid), TNFRSF10D (Two-hybrid)
ESM2 similar proteins: A0A076FF10, A0A076FFM5, B3P9N0, B4PY69, B4R313, B6JWP7, D6WMX4, F7J184, F7J186, F7J187, F7J188, H9N289, H9N290, O13861, O14249, O14349, O42411, O42449, O46084, O74787, O81000, O81395, P34426, P49896, P51820, P53264, P95483, Q05763, Q06510, Q17938, Q1JUZ1, Q1JUZ2, Q21407, Q28CA0, Q2QEI3, Q2QRX6, Q38932, Q68EW0, Q6DHJ3, Q755Y0
Diamond homologs: G5EEM9, O00562, O35954, O46606, P16446, P43125, P48738, P48739, P53810, P53811, P53812, Q00169, Q28CA0, Q2HJ54, Q3UHE1, Q54D93, Q54VC7, Q5R6F0, Q5U2N3, Q6NZC7, Q6ZPQ6, Q80YA3, Q8K4R4, Q8NEL9, Q8W5R2, Q9BZ71, Q9BZ72, Q9NCL7, Q9NCL8, Q9TR36, Q9U9P7, Q9UKF7, Q12204
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRKCA | “up-regulates activity” | PITPNC1 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
20 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 13 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
4271 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:67378199:CGAGG:C | donor_loss | 1.0000 |
| 17:67378201:AGGT:A | donor_loss | 1.0000 |
| 17:67378203:G:C | donor_loss | 1.0000 |
| 17:67378204:T:G | donor_loss | 1.0000 |
| 17:67431812:A:G | donor_gain | 1.0000 |
| 17:67438855:GCCA:G | donor_gain | 1.0000 |
| 17:67532800:A:AG | acceptor_gain | 1.0000 |
| 17:67532800:A:AT | acceptor_loss | 1.0000 |
| 17:67532801:G:GC | acceptor_gain | 1.0000 |
| 17:67532801:GT:G | acceptor_gain | 1.0000 |
| 17:67532801:GTA:G | acceptor_gain | 1.0000 |
| 17:67532801:GTAC:G | acceptor_gain | 1.0000 |
| 17:67532801:GTACA:G | acceptor_gain | 1.0000 |
| 17:67532948:CAGGT:C | donor_loss | 1.0000 |
| 17:67532949:AGGT:A | donor_loss | 1.0000 |
| 17:67532950:GGT:G | donor_loss | 1.0000 |
| 17:67532952:T:A | donor_loss | 1.0000 |
| 17:67553590:A:AG | acceptor_gain | 1.0000 |
| 17:67553618:G:GG | donor_gain | 1.0000 |
| 17:67578183:CAG:C | acceptor_loss | 1.0000 |
| 17:67578184:A:AG | acceptor_gain | 1.0000 |
| 17:67578184:AGT:A | acceptor_gain | 1.0000 |
| 17:67578185:G:GT | acceptor_gain | 1.0000 |
| 17:67578185:GT:G | acceptor_gain | 1.0000 |
| 17:67578185:GTG:G | acceptor_gain | 1.0000 |
| 17:67578185:GTGT:G | acceptor_gain | 1.0000 |
| 17:67578185:GTGTT:G | acceptor_gain | 1.0000 |
| 17:67578258:G:GG | donor_gain | 1.0000 |
| 17:67632132:T:A | acceptor_gain | 1.0000 |
| 17:67632138:TTCA:T | acceptor_loss | 1.0000 |
AlphaMissense
2193 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:67378174:G:C | R7P | 1.000 |
| 17:67378186:C:A | P11Q | 1.000 |
| 17:67378189:T:C | L12P | 1.000 |
| 17:67532802:T:C | Y17H | 1.000 |
| 17:67532811:G:A | G20R | 1.000 |
| 17:67532811:G:C | G20R | 1.000 |
| 17:67532812:G:A | G20E | 1.000 |
| 17:67532812:G:T | G20V | 1.000 |
| 17:67532818:T:C | L22P | 1.000 |
| 17:67532820:T:G | Y23D | 1.000 |
| 17:67532836:A:C | H28P | 1.000 |
| 17:67532865:G:A | G38R | 1.000 |
| 17:67532865:G:C | G38R | 1.000 |
| 17:67532865:G:T | G38W | 1.000 |
| 17:67532866:G:A | G38E | 1.000 |
| 17:67532916:G:T | G55W | 1.000 |
| 17:67532917:G:A | G55E | 1.000 |
| 17:67532933:G:C | K60N | 1.000 |
| 17:67532933:G:T | K60N | 1.000 |
| 17:67532935:G:C | R61P | 1.000 |
| 17:67552270:T:A | W71R | 1.000 |
| 17:67552270:T:C | W71R | 1.000 |
| 17:67552271:G:C | W71S | 1.000 |
| 17:67552272:G:C | W71C | 1.000 |
| 17:67552272:G:T | W71C | 1.000 |
| 17:67552274:C:A | A72D | 1.000 |
| 17:67552283:T:A | V75D | 1.000 |
| 17:67552310:A:T | E84V | 1.000 |
| 17:67552311:G:C | E84D | 1.000 |
| 17:67552311:G:T | E84D | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000007752 (17:67554118 G>A), RS1000020659 (17:67431146 C>G), RS1000029805 (17:67438218 T>C,G), RS1000057782 (17:67609579 C>T), RS1000062940 (17:67472281 G>A), RS1000067479 (17:67393619 A>C,T), RS1000070955 (17:67397749 T>C), RS1000085835 (17:67517574 T>C), RS1000086922 (17:67643198 G>A), RS1000094551 (17:67377402 G>A), RS1000120592 (17:67541261 G>A), RS1000128674 (17:67687833 C>A,T), RS1000133451 (17:67602947 C>T), RS1000167112 (17:67668233 T>C), RS1000172768 (17:67567997 G>T)
Disease associations
OMIM: gene MIM:605134 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
15 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002113_5 | Pulmonary function | 3.000000e-06 |
| GCST002349_4 | Response to protease inhibitor treatment in hepatitis c (peak serum total bilirubin levels) | 3.000000e-06 |
| GCST002875_91 | Diisocyanate-induced asthma | 6.000000e-07 |
| GCST005986_28 | Blood urea nitrogen levels | 9.000000e-13 |
| GCST006416_3 | Chronic central serous retinopathy | 2.000000e-07 |
| GCST007565_179 | Morning person | 3.000000e-14 |
| GCST007576_246 | Chronotype | 3.000000e-14 |
| GCST008058_2 | Estimated glomerular filtration rate | 4.000000e-10 |
| GCST008062_52 | Blood urea nitrogen levels | 9.000000e-22 |
| GCST010118_64 | Type 2 diabetes | 2.000000e-08 |
| GCST010146_43 | Serum immune biomarker levels | 1.000000e-08 |
| GCST010989_273 | Body size at age 10 | 2.000000e-08 |
| GCST012070_3 | Plasma selenium concentration | 3.000000e-07 |
| GCST90020025_1487 | Waist-to-hip ratio adjusted for BMI | 6.000000e-09 |
| GCST90020027_512 | Waist-hip index | 4.000000e-09 |
EFO canonical traits (11, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0003892 | pulmonary function measurement |
| EFO:0004713 | FEV/FVC ratio |
| EFO:0004570 | bilirubin measurement |
| EFO:0005657 | response to protease inhibitor |
| EFO:0006995 | response to diisocyanate |
| EFO:0009363 | chronic central serous retinopathy |
| EFO:0008328 | chronotype measurement |
| EFO:0004869 | YKL40 measurement |
| EFO:0004872 | inflammatory biomarker measurement |
| EFO:0009819 | comparative body size at age 10, self-reported |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
49 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 6 |
| trichostatin A | affects cotreatment, decreases expression | 3 |
| Valproic Acid | affects expression, decreases expression, decreases methylation | 3 |
| Aflatoxin B1 | increases methylation, affects expression, decreases methylation | 3 |
| Temozolomide | affects response to substance, decreases expression | 2 |
| Acetaminophen | increases expression | 2 |
| Doxorubicin | decreases expression, affects response to substance | 2 |
| Estradiol | affects cotreatment, decreases expression, increases expression | 2 |
| Formaldehyde | increases expression, decreases expression | 2 |
| Tobacco Smoke Pollution | decreases methylation, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | increases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| cupric chloride | decreases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | decreases expression, affects cotreatment | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Arsenic | affects methylation | 1 |
| Azacitidine | decreases expression | 1 |
| Cadmium | decreases expression | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Carmustine | affects response to substance | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hepatitis C virus infection