PKD1L1-AS1

Summary

PKD1L1-AS1 (PKD1L1 antisense RNA 1, HGNC:21911) is a long non-coding RNA gene on chromosome 7p12.3.

Predicted to be located in extracellular region.

Source: NCBI Gene 80099 — RefSeq curated summary.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:21911
Approved symbol	PKD1L1-AS1
Name	PKD1L1 antisense RNA 1
Location	7p12.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ21075
Ensembl gene	ENSG00000136275
Ensembl biotype	lncRNA
Entrez	80099
RNAcentral	URS0000E60AF6 — lncRNA, 664 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000418326, ENST00000623971

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000418326 — 4 exons

Exon	Start	End
ENSE00001694648	47819507	47819847
ENSE00001733882	47813426	47813569
ENSE00001792400	47795424	47795443
ENSE00003754988	47818026	47818195

Expression profiles

Bgee: expression breadth broad, 79 present calls, max score 96.31.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0868 / max 7.8975, expressed in 37 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
78565	0.0868	37

Top tissues by expression

225 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	96.31	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.83	gold quality
triceps brachii	UBERON:0001509	73.27	gold quality
gluteal muscle	UBERON:0002000	73.13	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	66.82	gold quality
sural nerve	UBERON:0015488	64.36	silver quality
calcaneal tendon	UBERON:0003701	62.60	gold quality
Brodmann (1909) area 9	UBERON:0013540	62.13	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	61.69	gold quality
tendon of biceps brachii	UBERON:0008188	61.49	silver quality
sperm	CL:0000019	60.99	gold quality
male germ cell	CL:0000015	60.29	gold quality
tendon	UBERON:0000043	59.62	silver quality
periodontal ligament	UBERON:0008266	59.54	gold quality
inferior olivary complex	UBERON:0002127	59.35	gold quality
diaphragm	UBERON:0001103	59.26	gold quality
tongue squamous epithelium	UBERON:0006919	59.26	gold quality
dorsal motor nucleus of vagus nerve	UBERON:0002870	59.20	gold quality
biceps brachii	UBERON:0001507	57.72	gold quality
superficial temporal artery	UBERON:0001614	57.52	gold quality
cerebellar hemisphere	UBERON:0002245	57.43	gold quality
secondary oocyte	CL:0000655	57.32	gold quality
myocardium	UBERON:0002349	56.84	gold quality
trabecular bone tissue	UBERON:0002483	56.57	gold quality
prefrontal cortex	UBERON:0000451	56.53	gold quality
quadriceps femoris	UBERON:0001377	56.36	gold quality
vastus lateralis	UBERON:0001379	56.25	gold quality
cartilage tissue	UBERON:0002418	55.99	gold quality
endothelial cell	CL:0000115	55.82	gold quality
lymph node	UBERON:0000029	55.42	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.