PKP2
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Summary
PKP2 (plakophilin 2, HGNC:9024) is a protein-coding gene on chromosome 12p11.21, encoding Plakophilin-2 (Q99959). A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. It is haploinsufficient (ClinGen: sufficient evidence).
This gene encodes a member of the arm-repeat (armadillo) and plakophilin gene families. Plakophilin proteins contain numerous armadillo repeats, localize to cell desmosomes and nuclei, and participate in linking cadherins to intermediate filaments in the cytoskeleton. This gene may regulate the signaling activity of beta-catenin and is required to maintain transcription of genes that control intracellular calcium cycling including ryanodine receptor 2, ankyrin-B, triadin, and calcium channel, voltage-dependent, L type, alpha 1C. Mutations in this gene are associated with different inherited cardiac conditions including Arrythmogenic Cardiomyopathy, Brugada Syndrome, and Idiopathic Ventricular Fibrillation. A processed pseudogene with high similarity to this gene has been mapped to chromosome 12p13.
Source: NCBI Gene 5318 — RefSeq curated summary.
At a glance
- Gene–disease (curated): arrhythmogenic right ventricular cardiomyopathy (Definitive, ClinGen) — +6 more curated relationships
- GWAS associations: 13
- Clinical variants (ClinVar): 2,357 total — 232 pathogenic, 94 likely-pathogenic
- Phenotypes (HPO): 24
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_001005242
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9024 |
| Approved symbol | PKP2 |
| Name | plakophilin 2 |
| Location | 12p11.21 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000057294 |
| Ensembl biotype | protein_coding |
| OMIM | 602861 |
| Entrez | 5318 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 9 protein_coding, 5 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000070846, ENST00000340811, ENST00000546498, ENST00000546741, ENST00000546769, ENST00000549461, ENST00000700555, ENST00000700557, ENST00000700558, ENST00000700559, ENST00000700560, ENST00000700561, ENST00000700562, ENST00000700563, ENST00000700564, ENST00000700565
RefSeq mRNA: 10 — MANE Select: NM_001005242
NM_001005242, NM_001407155, NM_001407156, NM_001407157, NM_001407158, NM_001407159, NM_001407160, NM_001407161, NM_001407162, NM_004572
CCDS: CCDS31771, CCDS8731
Canonical transcript exons
ENST00000340811 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001101448 | 32868927 | 32869062 |
| ENSE00001133478 | 32850766 | 32850973 |
| ENSE00001374889 | 32896509 | 32896777 |
| ENSE00002352416 | 32802403 | 32802556 |
| ENSE00003980147 | 32877846 | 32878543 |
| ENSE00003980150 | 32796109 | 32796298 |
| ENSE00003980161 | 32790755 | 32792492 |
| ENSE00003980163 | 32824045 | 32824162 |
| ENSE00003980164 | 32792644 | 32792731 |
| ENSE00003980168 | 32822467 | 32822631 |
| ENSE00003980171 | 32841028 | 32841205 |
| ENSE00004014197 | 32821356 | 32821529 |
| ENSE00004014199 | 32878920 | 32879032 |
Expression profiles
Bgee: expression breadth ubiquitous, 237 present calls, max score 98.52.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 10.9210 / max 528.4879, expressed in 1013 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 130415 | 10.6824 | 1009 |
| 130409 | 0.1469 | 43 |
| 130411 | 0.0356 | 8 |
| 130414 | 0.0231 | 8 |
| 130412 | 0.0121 | 7 |
| 130410 | 0.0115 | 5 |
| 130413 | 0.0094 | 5 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| heart right ventricle | UBERON:0002080 | 98.52 | gold quality |
| apex of heart | UBERON:0002098 | 98.31 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 98.20 | gold quality |
| heart left ventricle | UBERON:0002084 | 97.59 | gold quality |
| myocardium | UBERON:0002349 | 97.59 | gold quality |
| cardiac ventricle | UBERON:0002082 | 97.58 | gold quality |
| right uterine tube | UBERON:0001302 | 97.01 | gold quality |
| right atrium auricular region | UBERON:0006631 | 96.93 | gold quality |
| cardiac atrium | UBERON:0002081 | 96.86 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 96.45 | gold quality |
| colonic mucosa | UBERON:0000317 | 96.08 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 96.02 | gold quality |
| rectum | UBERON:0001052 | 95.84 | gold quality |
| heart | UBERON:0000948 | 94.63 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 93.63 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 92.05 | gold quality |
| minor salivary gland | UBERON:0001830 | 91.82 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 91.58 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 88.99 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 88.87 | gold quality |
| parotid gland | UBERON:0001831 | 88.53 | gold quality |
| jejunal mucosa | UBERON:0000399 | 88.06 | gold quality |
| mouth mucosa | UBERON:0003729 | 87.46 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 86.89 | gold quality |
| transverse colon | UBERON:0001157 | 86.87 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 86.55 | gold quality |
| colonic epithelium | UBERON:0000397 | 86.05 | gold quality |
| right ovary | UBERON:0002118 | 86.02 | gold quality |
| left ovary | UBERON:0002119 | 85.77 | gold quality |
| islet of Langerhans | UBERON:0000006 | 85.63 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-3929 | yes | 331.61 |
| E-MTAB-6701 | yes | 77.53 |
| E-MTAB-6678 | yes | 6.61 |
| E-CURD-11 | no | 93.72 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): HNF4A, PKP1, PKP3
miRNA regulators (miRDB)
98 targeting PKP2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-23A-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23B-3P | 99.95 | 74.24 | 3163 |
| HSA-MIR-23C | 99.95 | 73.92 | 3192 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
| HSA-MIR-3140-3P | 99.88 | 68.47 | 2069 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-6124 | 99.87 | 69.78 | 3551 |
| HSA-MIR-6857-5P | 99.87 | 65.32 | 985 |
| HSA-MIR-3919 | 99.87 | 69.45 | 2489 |
| HSA-MIR-4799-5P | 99.82 | 70.60 | 2663 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-1299 | 99.77 | 71.24 | 2389 |
| HSA-MIR-4679 | 99.76 | 69.19 | 1229 |
| HSA-MIR-200A-5P | 99.76 | 69.10 | 949 |
| HSA-MIR-200B-5P | 99.76 | 69.05 | 948 |
| HSA-MIR-3617-5P | 99.75 | 69.41 | 1968 |
| HSA-MIR-641 | 99.75 | 69.35 | 1975 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- Protein binding and functional characterization of plakophilin 2. Evidence for its diverse roles in desmosomes and beta -catenin signaling (PMID:11790773)
- In 32 of 120 unrelated individuals with ARVC, we identified heterozygous mutations in PKP2, which encodes plakophilin-2, an essential armadillo-repeat protein of the cardiac desmosome. (PMID:15489853)
- mutations in the desmosomal plakophilin-2 gene can cause arrhythmogenic right ventricular cardiomyopathy (PMID:16415378)
- PKP2 mutation in arrhythmogenic right ventricular dysplasia/cardiomyopathy(ARVD/C) correlates with earlier onset of symptoms and arrhythmia. Patients experience implanted cardioverter/defibrillator(ICD) interventions irrespective of classic risk factors. (PMID:16549640)
- PKP2 mutations can be identified in nearly half of the Dutch patients fulfilling the arrhythmogenic right ventricular dysplasia/cardiomyopathy(ARVC)criteria. (PMID:16567567)
- Premature truncation of the plakophilin-2 protein appears to be the predominant mechanism whereby PKP2 mutations elicit the arrhythmogenic right ventricular cardiomyopathy phenotype. (PMID:16876743)
- PKP2 mutations in a group of families with ARVD/C have both reduced penetrance and variable expressivity. Gender may have an influence on penetrance of PKP2 mutations, with male mutation carriers more likely to develop specific phenotypic manifestations (PMID:17010805)
- Novel homozygous mutation in PKP2 (c.[2484C>T]+[2484C>T]), which is predicted to be translationally silent, produced an alternatively spliced variant and Arrhytmogenic right ventricular dysplasia. (PMID:17041889)
- The present study adds to the growing body of evidence that plakophilin-2 missense mutations represent a major inherited cause of arrhythmogenic right ventricular dysplasia (ARVD) in patients of Finnish ancestry. (PMID:17521752)
- PKP2 knockdown is accompanied by increased phosphorylation of PKC substrates, raising the possibility that global alterations in PKC signaling may contribute to pathogenesis of congenital defects caused by PKP2 deficiency. (PMID:18474624)
- Mutations in the desmosome genes were identified in four of the five patients (three with a DSG2 mutation and one with a DSP mutation). Five gene mutations were noted in four patients and all mutations were novel (one patient had a DSG2 double mutation). (PMID:18632414)
- Reduced connexin43 expression and localization to the intercalated disk occurs in heterozygous human PKP-2 mutations, potentially explaining the delayed conduction and propensity to develop arrhythmias seen in this disease. (PMID:18662195)
- Their expression did not disrupt localization of endogenous PKP2, connexin-43 (Cx43), or desmoplakin (DP). However, we observed reduced abundance of Cx43 after R79x expression. (PMID:19084810)
- Data discovered a plakophilin-2 mutation that prolongs the QT interval dispersion in the southern Chinese Arrhythmogenic right ventricular cardiomyopathy population. (PMID:19302745)
- Direct sequencing of PKP2 led to the identification of 5 novel heterozygous mutations (R158K, Q211X, L419S, A793D, and N852fsX930) in 39% of patients (7 of 18) with ARVD/C. (PMID:19427443)
- Mutant plakophilin-2 proteins were unable to disrupt established desmosomes when expressed in an E-cadherin-expressing epithelial cell model; they were unable to initiate de novo assembly of desmosomes in an N-cadherin-expressing epithelial cell model. (PMID:19533476)
- massive acquisition of Pkp2 and its integration into adherens junctions (AJ) plaques of a large number of transformed cell lines is demonstrated with biochemical and immunolocalization techniques. (PMID:19551809)
- mutations in plakophylin-2 (PKP2) gene in ARVC (PMID:19880068)
- Fifteen percent of Danish arrhythmogenic right ventricular cardiomyopathy/dysplasia patients carried PKP2 mutations. (PMID:19955750)
- Data suggest that PKP2 may functionally link RhoA- and PKC-dependent pathways to drive actin reorganization. (PMID:20554761)
- Adherens junctions connecting cardiac myxoma cells show exactly such general acquisition of Pkp2. (PMID:20693980)
- Studies identified two mutations in DSG2, four in DSC2, two in DSP, four in JUP and seven in PKP2. (PMID:20864495)
- PKP2A was shown to be the major isoform expressed in human heart tissue and PKP2B protein was undetectable; results strongly suggest that p.Arg490Trp and other variants located in PKP2 exon 6 may not be disease causing (PMID:21378009)
- In breast cancer, compared with normal tissue, PKP1 and PKP2 expressions were indifferent (P > 0.05), but PKP3 expression was significantly increased (PMID:21947748)
- PKP2 mutations are not specific for arrhythmogenic right ventricular cardiomyopathy and may result in sudden unexpected death with negative autopsy. (PMID:22019812)
- The authors report on a pedigree of cases involving a mutation in the plakophilin 2 gene that was associated with the development of arrhythmogenic right ventricular cardiomyopathy. (PMID:22035158)
- PKP2 gene upregulation is associated with bladder cancer invasion. (PMID:22119253)
- While many of the reported ARVC mutations are truncating mutations, the possibly damaging variant found in this family, is a missense alteration affecting a highly conserved residue 506 located in exon 7. (PMID:22170284)
- haploinsufficiency is the most likely cause for the genesis of dominant arrhythmogenic right ventricular cardiomyopathy due to mutations in PKP2 (PMID:22781308)
- Results show that PKP2 mutations are insufficient to cause ARVD due to variable expression and incomplete penetrance (PMID:23147395)
- PKP2 gene mutation is associated with arrhythmogenic cardiomyopathy in a large Dutch family. (PMID:23270881)
- The copy number variations analysis identified a heterozygous deletion of about 122 kb on chromosome 12p11.21, including the entire plakophilin-2 gene and shared by all affected family members. (PMID:23486541)
- Of a total of 715 Sudden cardiac death cases, seven (1.0%) carried one of the ten mutations assayed: three carried KCNH2 R176W, one KCNH2 L552S, two PKP2 Q59L, and one RYR2 R3570W. (PMID:23651034)
- These data uncover a potential role for PKP2 upstream of beta1 integrin and RhoA in integrating cell-cell and cell-substrate contact signaling in basal keratinocytes. (PMID:23884246)
- Downstream Hippo molecules STE20-like protein kinases 1/2, large tumor suppressor kinases 1/2, and Yes-associated protein (YAP, the effector of the pathway) are phosphorylated, offering novel mechanisms for arrhythmogenic cardiomyopathy pathogenesis. (PMID:24276085)
- Missense mutations in plakophilin-2 cause sodium current deficit and associate with a Brugada syndrome phenotype. (PMID:24352520)
- PKP2 haploinsufficiency contributes to pathogenesis in arrhythmogenic cardiomyopathy. (PMID:24704780)
- mutations in PKP2 are associated with a later age of onset of arrhythmogenic right ventricular cardiomyopathy (PMID:24967631)
- Six variants of uncertain clinical significance in the PKP2, JUP, and DSG2 genes showed a deleterious effect on mRNA splicing, indicating these are ARVD/C-related pathogenic splice site mutations. (PMID:25087486)
- PKP2 is a novel activator of the EGFR signaling pathway. (PMID:25113560)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | pkp2 | ENSDARG00000023026 |
| mus_musculus | Pkp2 | ENSMUSG00000041957 |
| rattus_norvegicus | Pkp2 | ENSRNOG00000001825 |
| drosophila_melanogaster | p120ctn | FBGN0260799 |
| caenorhabditis_elegans | WBGENE00002175 |
Paralogs (6): PKP1 (ENSG00000081277), ARVCF (ENSG00000099889), PKP4 (ENSG00000144283), CTNND2 (ENSG00000169862), PKP3 (ENSG00000184363), CTNND1 (ENSG00000198561)
Protein
Protein identifiers
Plakophilin-2 — Q99959 (reviewed: Q99959)
All UniProt accessions (7): Q99959, A0A087WXY2, A0A8V8TPU9, A0A8V8TQD7, A0AAQ5BGX6, A0AAQ5BGY2, A0AAQ5BH07
UniProt curated annotations — full annotation on UniProt →
Function. A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. Regulates focal adhesion turnover resulting in changes in focal adhesion size, cell adhesion and cell spreading, potentially via transcriptional modulation of beta-integrins. Required to maintain gingival epithelial barrier function. Important component of the desmosome that is also required for localization of desmosome component proteins such as DSC2, DSG2 and JUP to the desmosome cell-cell junction. Required for the formation of desmosome cell junctions in cardiomyocytes, thereby required for the correct formation of the heart, specifically trabeculation and formation of the atria walls. Loss of desmosome cell junctions leads to mis-localization of DSP and DSG2 resulting in disruption of cell-cell adhesion and disordered intermediate filaments. Modulates profibrotic gene expression in cardiomyocytes via regulation of DSP expression and subsequent activation of downstream TGFB1 and MAPK14/p38 MAPK signaling. Required for cardiac sodium current propagation and electrical synchrony in cardiac myocytes, via ANK3 stabilization and modulation of SCN5A/Nav1.5 localization to cell-cell junctions. Required for mitochondrial function, nuclear envelope integrity and positive regulation of SIRT3 transcription via maintaining DES localization at its nuclear envelope and cell tip anchoring points, and thereby preserving regulation of the transcriptional program. Maintenance of nuclear envelope integrity protects against DNA damage and transcriptional dysregulation of genes, especially those involved in the electron transport chain, thereby preserving mitochondrial function and protecting against superoxide radical anion generation. Binds single-stranded DNA (ssDNA). May regulate the localization of GJA1 to gap junctions in intercalated disks of the heart. Involved in the inhibition of viral infection by influenza A viruses (IAV). Acts as a host restriction factor for IAV viral propagation, potentially via disrupting the interaction of IAV polymerase complex proteins.
Subunit / interactions. Interacts with DSC2. Interacts with JUP. Interacts with KRT5/CK5, KRT8/CK8, KRT14/CK14, KRT18/CK18 and VIM. Interacts (via N-terminus) with MARK3/C-TAK1. Interacts with DSP. Interacts with DSG1, DSG2 and DSG3. Interacts (via N-terminus) with CTNNB1. Interacts with CDH1. Interacts with the RNA polymerase III (Pol III) complex proteins POLR3A/RPC155, POLR3F/RPC39 and POLR3C/RPC82. Interacts with CTNNA3. Interacts (via N-terminus) with SCN5A/Nav1.5. Interacts with ANK3/ANKG and GJA1/CX43. (Microbial infection) Interacts (via N-terminus) with influenza A virus RNA polymerase subunit PB1 (via C-terminus); the interaction competitively inhibits the interaction between the subunits PB1 and PB2.
Subcellular location. Nucleus. Cell junction. Desmosome. Cytoplasm.
Tissue specificity. Expressed at myocyte intercalated disks in the heart (at protein level). Expressed in gingival epithelial, endothelial and fibroblast cells (at protein level). Faintly expressed in tracheal epithelial cells (at protein level). Widely expressed. Found at desmosomal plaques in simple and stratified epithelia and in non-epithelial tissues such as myocardium and lymph node follicles. In most stratified epithelia found in the desmosomes of the basal cell layer and seems to be absent from suprabasal strata. (Microbial infection) Abundantly expressed in tracheal epithelial cells following influenza A virus infection (at protein level).
Disease relevance. Arrhythmogenic right ventricular dysplasia, familial, 9 (ARVD9) [MIM:609040] A congenital heart disease characterized by infiltration of adipose and fibrous tissue into the right ventricle and loss of myocardial cells, resulting in ventricular and supraventricular arrhythmias. The disease is caused by variants affecting the gene represented in this entry.
Induction. (Microbial infection) mRNA levels increase in response to P.gingivalis challenge while protein expression decreases, suggesting proteasomal degradation in response to P.gingivalis infection of gingival epithelial cells.
Miscellaneous. Undetected in heart. Major isoform in heart.
Similarity. Belongs to the beta-catenin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q99959-1 | 2, B | yes |
| Q99959-2 | 1, A |
RefSeq proteins (10): NP_001005242, NP_001394084, NP_001394085, NP_001394086, NP_001394087, NP_001394088, NP_001394089, NP_001394090, NP_001394091, NP_004563 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000225 | Armadillo | Repeat |
| IPR011989 | ARM-like | Homologous_superfamily |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR028435 | Plakophilin/d_Catenin | Family |
Pfam: PF00514
UniProt features (81 total): sequence variant 31, helix 18, modified residue 16, repeat 8, region of interest 3, mutagenesis site 2, chain 1, compositionally biased region 1, splice variant 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3TT9 | X-RAY DIFFRACTION | 1.55 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q99959-F1 | 64.32 | 0.42 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (16): 44, 46, 82, 132, 135, 151, 154, 155, 169, 172, 177, 183, 197, 251, 294, 329
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 82 | abolishes phosphorylation by mark3. |
| 87 | reduces phosphorylation of s-82 by mark3. reduces interaction with mark3. |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-6805567 | Keratinization |
| R-HSA-6809371 | Formation of the cornified envelope |
MSigDB gene sets: 340 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_DN, GOBP_CARDIAC_CHAMBER_DEVELOPMENT, GOBP_BUNDLE_OF_HIS_CELL_TO_PURKINJE_MYOCYTE_COMMUNICATION, GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_INTERMEDIATE_FILAMENT_BASED_PROCESS, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_INTERMEDIATE_FILAMENT_ORGANIZATION, GOBP_CARDIAC_CHAMBER_MORPHOGENESIS, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_DN, GRAESSMANN_RESPONSE_TO_MC_AND_SERUM_DEPRIVATION_DN, LUCAS_HNF4A_TARGETS_UP, GOBP_POSITIVE_REGULATION_OF_SODIUM_ION_TRANSPORT, GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_CELL_CELL_SIGNALING
GO Biological Process (20): desmosome assembly (GO:0002159), desmosome organization (GO:0002934), cell-cell signaling (GO:0007267), heart development (GO:0007507), positive regulation of sodium ion transport (GO:0010765), regulation of cell-substrate adhesion (GO:0010810), intermediate filament bundle assembly (GO:0045110), maintenance of animal organ identity (GO:0048496), ventricular cardiac muscle tissue morphogenesis (GO:0055010), protein localization to plasma membrane (GO:0072659), cardiac muscle cell action potential involved in contraction (GO:0086002), ventricular cardiac muscle cell action potential (GO:0086005), cell communication by electrical coupling involved in cardiac conduction (GO:0086064), bundle of His cell-Purkinje myocyte adhesion involved in cell communication (GO:0086073), regulation of heart rate by cardiac conduction (GO:0086091), cell-cell adhesion (GO:0098609), regulation of ventricular cardiac muscle cell action potential (GO:0098911), maintenance of protein localization at cell tip (GO:0099017), regulation of substrate adhesion-dependent cell spreading (GO:1900024), cell adhesion (GO:0007155)
GO Molecular Function (10): DNA binding (GO:0003677), protein kinase C binding (GO:0005080), sodium channel regulator activity (GO:0017080), intermediate filament binding (GO:0019215), transmembrane transporter binding (GO:0044325), alpha-catenin binding (GO:0045294), cadherin binding (GO:0045296), molecular adaptor activity (GO:0060090), cell adhesive protein binding involved in bundle of His cell-Purkinje myocyte communication (GO:0086083), protein binding (GO:0005515)
GO Cellular Component (14): cornified envelope (GO:0001533), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), intermediate filament (GO:0005882), plasma membrane (GO:0005886), cell-cell junction (GO:0005911), adherens junction (GO:0005912), intercalated disc (GO:0014704), membrane (GO:0016020), cell junction (GO:0030054), desmosome (GO:0030057), cell tip (GO:0051286), anchoring junction (GO:0070161)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Developmental Biology | 1 |
| Keratinization | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| binding | 3 |
| animal organ development | 2 |
| cardiac conduction | 2 |
| protein binding | 2 |
| cell-cell junction | 2 |
| desmosome organization | 1 |
| cell-cell junction assembly | 1 |
| cell-cell junction organization | 1 |
| cell communication | 1 |
| signaling | 1 |
| circulatory system development | 1 |
| regulation of sodium ion transport | 1 |
| sodium ion transport | 1 |
| positive regulation of monoatomic ion transport | 1 |
| regulation of cell adhesion | 1 |
| cell-substrate adhesion | 1 |
| cellular component assembly | 1 |
| intermediate filament organization | 1 |
| negative regulation of cell differentiation | 1 |
| cardiac ventricle morphogenesis | 1 |
| ventricular cardiac muscle tissue development | 1 |
| cardiac muscle tissue morphogenesis | 1 |
| protein localization to membrane | 1 |
| protein localization to cell periphery | 1 |
| cardiac muscle cell action potential | 1 |
| cardiac muscle cell contraction | 1 |
| cardiac muscle cell action potential involved in contraction | 1 |
| cell communication by electrical coupling | 1 |
| cell communication involved in cardiac conduction | 1 |
| heterotypic cell-cell adhesion | 1 |
| cardiac muscle cell-cardiac muscle cell adhesion | 1 |
| bundle of His cell to Purkinje myocyte communication | 1 |
| regulation of heart rate | 1 |
| cell adhesion | 1 |
| regulation of cardiac muscle cell contraction | 1 |
| ventricular cardiac muscle cell action potential | 1 |
| regulation of cardiac muscle cell action potential | 1 |
| maintenance of protein location in cell | 1 |
| cell tip | 1 |
Protein interactions and networks
STRING
1352 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PKP2 | DSP | P15924 | 999 |
| PKP2 | DSC2 | Q02487 | 998 |
| PKP2 | DSG2 | Q14126 | 998 |
| PKP2 | JUP | P14923 | 977 |
| PKP2 | SCN5A | Q14524 | 976 |
| PKP2 | CTNNA3 | Q9UI47 | 976 |
| PKP2 | GJA1 | P17302 | 972 |
| PKP2 | DSC3 | Q14574 | 950 |
| PKP2 | TMEM43 | Q9BTV4 | 934 |
| PKP2 | DSG1 | Q02413 | 878 |
| PKP2 | TGFB3 | P10600 | 862 |
| PKP2 | RYR2 | Q92736 | 828 |
| PKP2 | LMNA | P02545 | 754 |
| PKP2 | CDH2 | P19022 | 748 |
| PKP2 | PRKCA | P17252 | 728 |
IntAct
187 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PB1 | PA | psi-mi:“MI:0914”(association) | 0.820 |
| YWHAH | ABLIM1 | psi-mi:“MI:0914”(association) | 0.800 |
| EGFR | CTNND1 | psi-mi:“MI:0914”(association) | 0.750 |
| PB1 | NP | psi-mi:“MI:0914”(association) | 0.740 |
| KBTBD7 | METTL15 | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| MTUS2 | PKP2 | psi-mi:“MI:0915”(physical association) | 0.670 |
| PKP2 | MTUS2 | psi-mi:“MI:0915”(physical association) | 0.670 |
| rep | POLA1 | psi-mi:“MI:0914”(association) | 0.670 |
| PKP2 | rep | psi-mi:“MI:0915”(physical association) | 0.660 |
| YWHAG | BLTP3B | psi-mi:“MI:0914”(association) | 0.640 |
| YWHAG | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.640 |
| PB1 | PB2 | psi-mi:“MI:0914”(association) | 0.630 |
| SFN | PKP2 | psi-mi:“MI:0915”(physical association) | 0.630 |
| YWHAH | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.610 |
| YWHAB | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.610 |
| PKP2 | YWHAZ | psi-mi:“MI:0914”(association) | 0.610 |
| YWHAB | BLTP3B | psi-mi:“MI:0914”(association) | 0.610 |
| PKP2 | PB1 | psi-mi:“MI:0915”(physical association) | 0.600 |
| PKP2 | PB1 | psi-mi:“MI:0403”(colocalization) | 0.600 |
BioGRID (322): MTUS2 (Two-hybrid), NDEL1 (Two-hybrid), PKP2 (Affinity Capture-MS), PKP2 (Affinity Capture-MS), PKP2 (Affinity Capture-MS), PKP2 (Affinity Capture-MS), PKP2 (Affinity Capture-MS), PKP2 (Affinity Capture-MS), PKP2 (Affinity Capture-MS), PKP2 (Affinity Capture-MS), PKP2 (Affinity Capture-MS), PKP2 (Affinity Capture-MS), PKP2 (Affinity Capture-RNA), PKP2 (Two-hybrid), PKP2 (Proximity Label-MS)
ESM2 similar proteins: A0A571BF63, A0A8M9QN10, A0JMA8, A1A535, A1A5P5, B0BF33, E7F187, F1M7L9, O00443, O15013, P0C6P5, P25054, P70039, P70478, P97350, P97433, Q08AE8, Q12923, Q13835, Q14D04, Q1LXR6, Q1LYM3, Q28161, Q5EB20, Q5PQS3, Q5R5R2, Q5RAY1, Q5U245, Q5XIZ9, Q61194, Q61315, Q64512, Q6AI08, Q6ING4, Q6IRU7, Q6ZUJ8, Q7Z3E5, Q7ZY56, Q803Q4, Q8BMD7
Diamond homologs: B0BF33, F1M7L9, O35116, O35927, P97350, Q08DQ0, Q13835, Q28161, Q68FH0, Q99569, Q99959, Q9CQ73, Q9QY23, Q9UQB3, Q9Y446, B4F7F3, O00192, O60716, P30999, P98203, Q8AXM9, Q9U308, Q9C9A6, A0A1W2PQL4, A6NK75, A6NN14, A6NNF4, A6NP11, A8MTY0, A8MUV8, A8MXY4, B4DX44, B4DXR9, O14628, O43345, O75346, O75373, O75437, O95780, P0CB33
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ZEB2 | “down-regulates quantity by repression” | PKP2 | “transcriptional regulation” |
| PKP2 | down-regulates | Epithelial-mesenchymal_transition | |
| PKP2 | “up-regulates quantity by stabilization” | DSP | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 189 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 8 | 42.3× | 3e-09 |
| Activation of BAD and translocation to mitochondria | 7 | 42.0× | 3e-08 |
| SARS-CoV-1 targets host intracellular signalling and regulatory pathways | 7 | 37.0× | 6e-08 |
| Activation of BH3-only proteins | 7 | 27.4× | 6e-07 |
| Developmental Lineage of Mammary Gland Myoepithelial Cells | 6 | 25.7× | 6e-06 |
| Intrinsic Pathway for Apoptosis | 8 | 18.4× | 1e-06 |
| Developmental Lineage of Mammary Gland Luminal Epithelial Cells | 5 | 18.0× | 2e-04 |
| RHO GTPases activate PKNs | 7 | 17.5× | 7e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein targeting | 7 | 15.5× | 3e-04 |
| cell surface receptor protein tyrosine kinase signaling pathway | 8 | 8.4× | 2e-03 |
| intracellular protein localization | 9 | 5.7× | 1e-02 |
| positive regulation of cell migration | 14 | 5.2× | 3e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
2357 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 232 |
| Likely pathogenic | 94 |
| Uncertain significance | 1070 |
| Likely benign | 595 |
| Benign | 52 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1068825 | NM_001005242.3(PKP2):c.1379-1992C>T | Pathogenic |
| 1072271 | NM_001005242.3(PKP2):c.1616_1623dup (p.Val543fs) | Pathogenic |
| 1073811 | NM_001005242.3(PKP2):c.379dup (p.Thr127fs) | Pathogenic |
| 1074817 | NM_001005242.3(PKP2):c.1217_1379-790inv | Pathogenic |
| 1075513 | NC_000012.11:g.(?32949033)(32955500_?)del | Pathogenic |
| 1075514 | NC_000012.11:g.(?33030760)(33031986_?)del | Pathogenic |
| 1075515 | NC_000012.11:g.(?32945348)(32949242_?)del | Pathogenic |
| 1075516 | NC_000012.11:g.(?33021851)(33031976_?)del | Pathogenic |
| 1075965 | NM_001005242.3(PKP2):c.582T>A (p.Tyr194Ter) | Pathogenic |
| 1076311 | NM_001005242.3(PKP2):c.1127del (p.Phe376fs) | Pathogenic |
| 1184949 | NM_001005242.3(PKP2):c.869G>A (p.Trp290Ter) | Pathogenic |
| 1205033 | NM_001005242.3(PKP2):c.1379-2A>G | Pathogenic |
| 1297006 | NM_001005242.3(PKP2):c.1368dup (p.Gln457fs) | Pathogenic |
| 1321424 | NM_001005242.3(PKP2):c.2044C>T (p.Gln682Ter) | Pathogenic |
| 1329270 | NM_001005242.3(PKP2):c.1379-1_1556+1del | Pathogenic |
| 1335099 | NM_001005242.3(PKP2):c.1A>C (p.Met1Leu) | Pathogenic |
| 1344540 | NM_001005242.3(PKP2):c.336+1G>T | Pathogenic |
| 1354302 | NM_001005242.3(PKP2):c.1738G>T (p.Glu580Ter) | Pathogenic |
| 1358209 | NM_001005242.3(PKP2):c.329dup (p.Met110fs) | Pathogenic |
| 1369432 | NM_001005242.3(PKP2):c.2408_2411del (p.Leu803fs) | Pathogenic |
| 1372358 | NM_001005242.3(PKP2):c.472_473del (p.Arg158fs) | Pathogenic |
| 1380244 | NM_001005242.3(PKP2):c.759_769del (p.Asn254fs) | Pathogenic |
| 1394074 | NM_001005242.3(PKP2):c.464dup (p.Ser155fs) | Pathogenic |
| 1400125 | NM_001005242.3(PKP2):c.253G>T (p.Glu85Ter) | Pathogenic |
| 1412205 | NM_001005242.3(PKP2):c.1750C>T (p.Gln584Ter) | Pathogenic |
| 1443926 | NM_001005242.3(PKP2):c.1264_1265del (p.Leu422fs) | Pathogenic |
| 1452110 | NM_001005242.3(PKP2):c.1842dup (p.Tyr615fs) | Pathogenic |
| 1453476 | NC_000012.11:g.(?33030760)(33049665_?)del | Pathogenic |
| 1454572 | NM_001005242.3(PKP2):c.296_300dup (p.Arg101fs) | Pathogenic |
| 1455995 | NC_000012.11:g.(?33003680)(33003927_?)del | Pathogenic |
SpliceAI
1812 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:32792643:CCTT:C | donor_gain | 1.0000 |
| 12:32792727:CATAG:C | acceptor_gain | 1.0000 |
| 12:32792729:TAG:T | acceptor_gain | 1.0000 |
| 12:32792732:C:CC | acceptor_gain | 1.0000 |
| 12:32796107:A:AC | donor_gain | 1.0000 |
| 12:32796108:C:CC | donor_gain | 1.0000 |
| 12:32796108:CG:C | donor_gain | 1.0000 |
| 12:32796111:ATCG:A | donor_gain | 1.0000 |
| 12:32796299:C:CC | acceptor_gain | 1.0000 |
| 12:32802399:TCA:T | donor_loss | 1.0000 |
| 12:32802400:C:CG | donor_loss | 1.0000 |
| 12:32802401:A:AC | donor_gain | 1.0000 |
| 12:32802401:A:AT | donor_loss | 1.0000 |
| 12:32802402:C:CC | donor_gain | 1.0000 |
| 12:32821347:AATAC:A | donor_loss | 1.0000 |
| 12:32821348:ATACT:A | donor_loss | 1.0000 |
| 12:32821350:A:AC | donor_gain | 1.0000 |
| 12:32821350:ACT:A | donor_loss | 1.0000 |
| 12:32821351:C:CC | donor_gain | 1.0000 |
| 12:32821351:CTC:C | donor_loss | 1.0000 |
| 12:32821351:CTCA:C | donor_gain | 1.0000 |
| 12:32821352:TCAC:T | donor_loss | 1.0000 |
| 12:32821353:CACT:C | donor_loss | 1.0000 |
| 12:32821354:A:AC | donor_gain | 1.0000 |
| 12:32821354:ACTG:A | donor_loss | 1.0000 |
| 12:32821355:C:CT | donor_gain | 1.0000 |
| 12:32821355:CT:C | donor_gain | 1.0000 |
| 12:32821355:CTG:C | donor_gain | 1.0000 |
| 12:32821355:CTGG:C | donor_gain | 1.0000 |
| 12:32821355:CTGGT:C | donor_gain | 1.0000 |
AlphaMissense
5491 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:32792470:A:G | F867S | 0.999 |
| 12:32821375:A:G | L709P | 0.999 |
| 12:32821377:G:C | N708K | 0.999 |
| 12:32821377:G:T | N708K | 0.999 |
| 12:32821384:A:G | L706P | 0.999 |
| 12:32822597:A:G | L614P | 0.999 |
| 12:32824132:T:A | R573S | 0.999 |
| 12:32824132:T:G | R573S | 0.999 |
| 12:32824153:A:C | S566R | 0.999 |
| 12:32824153:A:T | S566R | 0.999 |
| 12:32824155:T:G | S566R | 0.999 |
| 12:32841028:C:G | R563T | 0.999 |
| 12:32841031:A:G | L562P | 0.999 |
| 12:32796212:A:G | C796R | 0.998 |
| 12:32802435:A:G | L756P | 0.998 |
| 12:32802447:A:G | L752P | 0.998 |
| 12:32821379:T:C | N708D | 0.998 |
| 12:32822606:A:G | L611P | 0.998 |
| 12:32824094:A:G | L586P | 0.998 |
| 12:32824162:T:A | R563S | 0.998 |
| 12:32824162:T:G | R563S | 0.998 |
| 12:32841028:C:A | R563I | 0.998 |
| 12:32792690:A:G | L844P | 0.997 |
| 12:32792702:G:T | A840D | 0.997 |
| 12:32796160:A:G | L813P | 0.997 |
| 12:32821390:C:T | G704E | 0.997 |
| 12:32821391:C:G | G704R | 0.997 |
| 12:32821391:C:T | G704R | 0.997 |
| 12:32822599:G:C | N613K | 0.997 |
| 12:32822599:G:T | N613K | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000009571 (12:32846415 G>T), RS1000038586 (12:32870180 T>C), RS1000110100 (12:32826230 C>A,T), RS1000152941 (12:32824620 T>G), RS1000158281 (12:32807935 G>C), RS1000180273 (12:32849753 T>C), RS1000192501 (12:32893769 A>G), RS1000199768 (12:32894015 G>C,T), RS1000208487 (12:32887382 A>G), RS1000256647 (12:32863285 G>A), RS1000264588 (12:32819370 T>C), RS1000273239 (12:32894646 C>A), RS1000303375 (12:32856320 CTA>C), RS1000313011 (12:32799129 G>A,C,T), RS1000337282 (12:32812110 G>A)
Disease associations
OMIM: gene MIM:602861 | disease phenotypes: MIM:609040, MIM:107970, MIM:115200, MIM:300376, MIM:302045, MIM:310200, MIM:601144, MIM:192600, MIM:603829, MIM:192500, MIM:105210, MIM:613426, MIM:604169, MIM:115080
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| arrhythmogenic right ventricular dysplasia 9 | Definitive | Autosomal dominant |
| left ventricular noncompaction | Supportive | Autosomal dominant |
| Brugada syndrome | Limited | Autosomal dominant |
| Brugada syndrome 1 | Disputed Evidence | Autosomal dominant |
| catecholaminergic polymorphic ventricular tachycardia | Disputed Evidence | Autosomal dominant |
ClinGen Gene-Disease Validity (4)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| catecholaminergic polymorphic ventricular tachycardia | Disputed | AD |
| dilated cardiomyopathy | Disputed | AD |
| arrhythmogenic right ventricular cardiomyopathy | Definitive | AD |
| Brugada syndrome 1 | Disputed | AD |
Mondo (26): arrhythmogenic right ventricular dysplasia 9 (MONDO:0012180), cardiomyopathy (MONDO:0004994), arrhythmogenic right ventricular cardiomyopathy (MONDO:0016587), familial isolated arrhythmogenic right ventricular dysplasia (MONDO:0016342), long QT syndrome (MONDO:0002442), ventricular tachycardia (MONDO:0005477), dilated cardiomyopathy 1A (MONDO:0007269), dilated cardiomyopathy (MONDO:0005021), Becker muscular dystrophy (MONDO:0010311), dilated cardiomyopathy 3B (MONDO:0010542), Duchenne muscular dystrophy (MONDO:0010679), Brugada syndrome (MONDO:0015263), hypertrophic cardiomyopathy (MONDO:0005045), familial hypertrophic cardiomyopathy (MONDO:0024573), ventricular fibrillation, paroxysmal familial, type 1 (MONDO:0011376)
Orphanet (20): Rare cardiomyopathy (Orphanet:167848), Inherited arrhythmogenic cardiomyopathy (Orphanet:247), Inherited isolated arrhythmogenic cardiomyopathy (Orphanet:217656), Familial dilated cardiomyopathy with conduction defect due to LMNA mutation (Orphanet:300751), Brugada syndrome (Orphanet:130), Familial isolated dilated cardiomyopathy (Orphanet:154), Dilated cardiomyopathy (Orphanet:217604), Becker muscular dystrophy (Orphanet:98895), Duchenne muscular dystrophy (Orphanet:98896), Rare hypertrophic cardiomyopathy (Orphanet:217569), Rare familial disorder with hypertrophic cardiomyopathy (Orphanet:99739), Idiopathic ventricular fibrillation (Orphanet:228140), Romano-Ward syndrome (Orphanet:101016), Congenital long QT syndrome (Orphanet:768), ATTRV30M amyloidosis (Orphanet:85447)
HPO phenotypes
24 total (26 of 24 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0001279 | Syncope |
| HP:0001645 | Sudden cardiac death |
| HP:0001649 | Tachycardia |
| HP:0001663 | Ventricular fibrillation |
| HP:0001695 | Cardiac arrest |
| HP:0001962 | Palpitations |
| HP:0002094 | Dyspnea |
| HP:0004308 | Ventricular arrhythmia |
| HP:0004751 | Paroxysmal ventricular tachycardia |
| HP:0004755 | Supraventricular tachycardia |
| HP:0004756 | Ventricular tachycardia |
| HP:0006677 | Prolonged QRS complex |
| HP:0006682 | Premature ventricular contraction |
| HP:0006698 | Dilatation of the ventricular cavity |
| HP:0011462 | Young adult onset |
| HP:0011663 | Right ventricular cardiomyopathy |
| HP:0011704 | Sick sinus syndrome |
| HP:0011705 | First degree atrioventricular block |
| HP:0011712 | Complete right bundle branch block |
| HP:0011715 | Trifascicular block |
| HP:0012251 | ST segment elevation |
| HP:0034304 | Epsilon wave |
| HP:0034364 | Fibrofatty replacement of right ventricular myocardium |
| HP:0001644 | Dilated cardiomyopathy |
| HP:0001639 | Hypertrophic cardiomyopathy |
GWAS associations
13 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001762_250 | Obesity-related traits | 9.000000e-06 |
| GCST001762_759 | Obesity-related traits | 3.000000e-06 |
| GCST001762_784 | Obesity-related traits | 3.000000e-06 |
| GCST003984_3 | Parkinson’s disease | 4.000000e-21 |
| GCST004104_3 | Body mass index (change over time) in lung cancer | 4.000000e-06 |
| GCST004136_32 | Methadone dose in opioid dependence | 7.000000e-06 |
| GCST004301_7 | Prevalent atrial fibrillation | 4.000000e-08 |
| GCST006061_218 | Atrial fibrillation | 5.000000e-16 |
| GCST006061_219 | Atrial fibrillation | 3.000000e-16 |
| GCST006414_10 | Atrial fibrillation | 3.000000e-14 |
| GCST006585_2679 | Blood protein levels | 2.000000e-06 |
| GCST008442_3 | Periodontal disease related phenotype (PCT5) | 1.000000e-08 |
| GCST010991_14 | Parkinson’s disease | 6.000000e-12 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005106 | body composition measurement |
| EFO:0005937 | longitudinal BMI measurement |
| EFO:0007907 | methadone dose measurement |
| EFO:0007780 | periodontal measurement |
MeSH disease descriptors (15)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D019571 | Arrhythmogenic Right Ventricular Dysplasia | C14.240.400.145; C14.280.238.028; C14.280.400.145; C16.131.240.400.145 |
| D053840 | Brugada Syndrome | C14.280.067.322; C14.280.123.250; C16.320.100 |
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D024741 | Cardiomyopathy, Hypertrophic, Familial | C14.280.238.100.500; C14.280.484.048.750.070.160.500; C16.320.160 |
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
| D020388 | Muscular Dystrophy, Duchenne | C05.651.534.500.300; C10.668.491.175.500.300; C16.320.322.562; C16.320.577.300 |
| D017180 | Tachycardia, Ventricular | C14.280.067.845.940; C14.280.123.875.940; C23.550.073.845.940 |
| D014693 | Ventricular Fibrillation | C14.280.067.922; C23.550.073.922 |
| C563808 | Arrhythmogenic Right Ventricular Dysplasia, Familial, 9 (supp.) | |
| C570377 | Benign Pseudohypertrophic Muscular Dystrophy (supp.) | |
| C563538 | Cardiomyopathy, Dilated, 1s (supp.) | |
| C580047 | Dmd-Associated Dilated Cardiomyopathy (supp.) | |
| C567851 | Ventricular Fibrillation, Paroxysmal Familial, 1 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
64 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, affects cotreatment, increases expression | 7 |
| methylmercuric chloride | decreases expression, increases expression, affects cotreatment | 4 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| sodium arsenite | decreases expression, affects cotreatment, increases abundance | 3 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment, decreases expression | 3 |
| Acetaminophen | decreases expression | 3 |
| Estradiol | affects expression, affects binding, decreases expression, affects cotreatment | 3 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| Lipopolysaccharides | affects cotreatment, decreases expression, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Quercetin | decreases expression | 2 |
| Smoke | decreases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, affects cotreatment | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol A | increases expression | 1 |
| lead acetate | decreases expression | 1 |
| potassium perchlorate | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects localization, increases expression, affects cotreatment | 1 |
| doxifluridine | increases response to substance | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| coumarin | affects phosphorylation | 1 |
| 1-UFT protocol | increases response to substance | 1 |
| hydroquinone | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, increases expression | 1 |
| epigallocatechin gallate | decreases expression, affects cotreatment | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
Cellosaurus cell lines
23 cell lines: 20 induced pluripotent stem cell, 3 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A0LT | EURACi006-A | Induced pluripotent stem cell | Male |
| CVCL_A0LU | EURACi006-A-1 | Induced pluripotent stem cell | Male |
| CVCL_A0LV | EURACi007-A | Induced pluripotent stem cell | Female |
| CVCL_A0LW | EURACi008-A | Induced pluripotent stem cell | Female |
| CVCL_A5FW | SCVIi003-A | Induced pluripotent stem cell | Male |
| CVCL_A5FX | SCVIi004-A | Induced pluripotent stem cell | Female |
| CVCL_A5FY | SCVIi005-A | Induced pluripotent stem cell | Male |
| CVCL_A5QH | JMUi001-A-2 | Induced pluripotent stem cell | Male |
| CVCL_A6XG | USFi004-A | Induced pluripotent stem cell | Female |
| CVCL_C9LG | INEUi002-A-1 | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
358 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00702117 | PHASE4 | COMPLETED | Ajmaline Utilization in the Diagnosis and Treatment of Cardiac Arrhythmias |
| NCT00348530 | PHASE4 | UNKNOWN | Carvedilol Versus Verapamil in Chronic Heart Failure Secondary to Non-Ischemic Cardiomyopathy |
| NCT00371891 | PHASE4 | COMPLETED | Ontario Multidetector Computed Tomographic (MDCT) Coronary Angiography Study (OMCAS) |
| NCT00401856 | PHASE4 | COMPLETED | CMR to Assess Fibrosis in Cardiomyopathy Using Eplerenone |
| NCT00559338 | PHASE4 | COMPLETED | Impact of Nesiritide Infusion for Decompensated Heart Failure in the Emergency Department |
| NCT00606775 | PHASE4 | UNKNOWN | The Preventive Efficacy of Carvedilol on Cardiac Dysfunction in Duchenne Muscular Dystrophy |
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Related Atlas pages
- Associated diseases: Brugada syndrome 1, catecholaminergic polymorphic ventricular tachycardia, Brugada syndrome, arrhythmogenic right ventricular dysplasia 9, left ventricular noncompaction, dilated cardiomyopathy, arrhythmogenic right ventricular cardiomyopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): amyloidosis, hereditary systemic 1, arrhythmogenic right ventricular cardiomyopathy, arrhythmogenic right ventricular dysplasia 1, arrhythmogenic right ventricular dysplasia 9, Becker muscular dystrophy, Brugada syndrome, Brugada syndrome 1, cardiac conduction defect, cardiac rhythm disease, catecholaminergic polymorphic ventricular tachycardia, dilated cardiomyopathy 1A, dilated cardiomyopathy 1S, dilated cardiomyopathy 3B, Duchenne muscular dystrophy, familial isolated arrhythmogenic right ventricular dysplasia, left ventricular noncompaction, left ventricular noncompaction 1, long QT syndrome 1, ventricular fibrillation, ventricular fibrillation, paroxysmal familial, type 1, ventricular tachycardia