PLAC1
gene geneOn this page
Also known as CT92OOSP2LOOSP2B
Summary
PLAC1 (placenta enriched 1, HGNC:9044) is a protein-coding gene on chromosome Xq26.3, encoding Placenta-specific protein 1 (Q9HBJ0). May play a role in placental development.
Involved in placenta development. Predicted to be located in extracellular region.
Source: NCBI Gene 10761 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 30 total
- MANE Select transcript:
NM_021796
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9044 |
| Approved symbol | PLAC1 |
| Name | placenta enriched 1 |
| Location | Xq26.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CT92, OOSP2L, OOSP2B |
| Ensembl gene | ENSG00000170965 |
| Ensembl biotype | protein_coding |
| OMIM | 300296 |
| Entrez | 10761 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 6 protein_coding, 3 protein_coding_CDS_not_defined
ENST00000359237, ENST00000466797, ENST00000473897, ENST00000476971, ENST00000878501, ENST00000917137, ENST00000917138, ENST00000917139, ENST00000950374
RefSeq mRNA: 4 — MANE Select: NM_021796
NM_001316887, NM_001316888, NM_001316889, NM_021796
CCDS: CCDS14642
Canonical transcript exons
ENST00000359237 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001153676 | 134602051 | 134602122 |
| ENSE00001153689 | 134658328 | 134658471 |
| ENSE00001424097 | 134565838 | 134566740 |
Expression profiles
Bgee: expression breadth ubiquitous, 105 present calls, max score 92.17.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3357 / max 184.3673, expressed in 100 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 200586 | 0.2579 | 68 |
| 200585 | 0.0519 | 39 |
| 200587 | 0.0259 | 8 |
Top tissues by expression
252 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| placenta | UBERON:0001987 | 92.17 | gold quality |
| adrenal tissue | UBERON:0018303 | 88.15 | gold quality |
| oocyte | CL:0000023 | 86.91 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.67 | gold quality |
| secondary oocyte | CL:0000655 | 79.94 | gold quality |
| cartilage tissue | UBERON:0002418 | 70.67 | silver quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 65.80 | gold quality |
| stromal cell of endometrium | CL:0002255 | 62.80 | gold quality |
| pancreatic ductal cell | CL:0002079 | 61.86 | silver quality |
| decidua | UBERON:0002450 | 59.34 | gold quality |
| endothelial cell | CL:0000115 | 55.78 | gold quality |
| hair follicle | UBERON:0002073 | 55.71 | gold quality |
| ileal mucosa | UBERON:0000331 | 54.49 | silver quality |
| deltoid | UBERON:0001476 | 54.19 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 54.17 | gold quality |
| cerebellar vermis | UBERON:0004720 | 53.66 | gold quality |
| right testis | UBERON:0004534 | 53.55 | gold quality |
| amniotic fluid | UBERON:0000173 | 52.52 | gold quality |
| buccal mucosa cell | CL:0002336 | 51.72 | gold quality |
| testis | UBERON:0000473 | 51.72 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 51.52 | gold quality |
| quadriceps femoris | UBERON:0001377 | 49.90 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 49.30 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 49.20 | gold quality |
| left testis | UBERON:0004533 | 49.15 | gold quality |
| metanephros | UBERON:0000081 | 49.02 | gold quality |
| olfactory bulb | UBERON:0002264 | 48.92 | gold quality |
| myocardium | UBERON:0002349 | 48.87 | gold quality |
| type B pancreatic cell | CL:0000169 | 48.83 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 48.55 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6701 | yes | 57.29 |
| E-ANND-3 | yes | 3.29 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CEBPB, ESR1, NCOA1, NCOA2, NCOA3, NR1H3, SOX2, SP1, TP53
miRNA regulators (miRDB)
12 targeting PLAC1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
| HSA-MIR-130B-5P | 99.83 | 68.50 | 1888 |
| HSA-MIR-7154-5P | 99.69 | 70.52 | 1900 |
| HSA-MIR-466 | 99.67 | 70.85 | 2863 |
| HSA-MIR-4643 | 99.49 | 67.63 | 1791 |
| HSA-MIR-8060 | 98.61 | 66.93 | 1187 |
| HSA-MIR-1178-3P | 98.57 | 67.09 | 890 |
Literature-anchored findings (GeneRIF, showing 40)
- PLAC1, a trophoblast-specific gene, is Trophoblast-specific expression throughout gestation and responsiveness to KGF are consistent with a fundamental role for PLAC1 at the maternal-fetal interface. (PMID:12412044)
- mRNA transcripts from placenta-expressed specific gene are detectable in maternal blood and rapidly disappear after delivery (PMID:15608456)
- PLAC1 expression is upregulated during trophoblast differentiation, localizing primarily to the differentiated syncytiotrophoblast. (PMID:15803460)
- Plasma PLAC1 and glial cells-missing 1 mRNAs appear promising as noninvasively measurable molecular markers for pre-eclampsia (PMID:16594548)
- In induced term pregnancies, PLAC1 mRNA in maternal blood at the beginning of the treatment correlates with time elapsed before delivery; this demonstrates that fetomaternal trafficking of nucleic acids is more consistent when labor is about to begin. (PMID:16860456)
- Data show that PLAC1 is restricted primarily to the differentiated trophoblast, localizing to intracellular membranous compartment(s) in the apical region of the syncytiotrophoblast and associated with its apical, microvillous membrane surface. (PMID:17186554)
- CRH, PLAC1, and selectin-P are distributed differently in preeclampsia cases compared to controls and correlate with signs of preeclampsia. (PMID:17554801)
- RNAi-mediated silencing of PLAC1 in MCF-7 and BT-549 breast cancer cells profoundly impairs motility, migration, and invasion and induces a G1-S cell cycle block with nearly complete abrogation of proliferation. (PMID:17909063)
- study demonstrated that PLAC1 is a novel tumor antigen with very restricted normal tissue expression; also evidence provided that PLAC1 is expressed in the tumor cells in a subset of lung cancer patients (PMID:17983203)
- 3.8% (4/101) of HCC patients had anti-PLAC1 antibody response, suggesting the immunogenicity of PLAC1 in HCC patients. PLAC1 represents a new class of tumor associated antigen with restricted expression in placenta and cancer tissues. (PMID:18183594)
- analysis of activation of trophoblast-specific PLAC1 in breast cancer by CCAAT/enhancer-binding protein beta (C/EBPbeta) isoform 2 (PMID:19652226)
- In normal tissues, PLAC1 expression was restricted to the placenta while developmental pluripotency associated-2 expression was restricted to the placenta and testis. (PMID:19705800)
- A potential role for PLAC1 as a biomarker predictive of specific pregnancy complications, such as preeclampsia. (PMID:20509147)
- The expression of PLAC1/CP1 genes correlates with various clinical and pathologic parameters in primary colorectal carcinoma. (PMID:21215095)
- A novel HLA-A2-restricted cytotoxic T lymphocyte epitope from cancer-testis antigen PLAC1 has been identified in breast cancer. (PMID:21710262)
- RXRalpha and LXR activate two promoters in placenta- and tumor-specific expression of PLAC1. (PMID:21937108)
- we identified a novel specific antitrophoblast antibody, anti-PLAC1, in infertile women with repeated unexplained implantation failure. PLAC1 shows placenta-specific expression and is localized primarily in the syncytiotrophoblast. (PMID:23434395)
- PLAC1/CP1 antigen is a possible prognostic marker of colorectal carcinoma, and PLAC1/CP1 p41-50 and PLAC1/CP1 p69-77 are novel HLA-A*0201-restricted CD8+ T cell epitopes (PMID:23604623)
- NCOA3 is a selective co-activator of estrogen receptor alpha-mediated transactivation of PLAC1. (PMID:24304549)
- This data suggests that the Epstein-Barr virus-induced PLAC1 is a member of the cancer/testis group of tumor antigens. (PMID:24912876)
- Data suggests that PLAC1 plays an important role in human placental trophoblast invasion and migration. (PMID:24989904)
- circulating mRNA improved detection rate of pre-eclampsia (PMID:25138310)
- PLAC1/CP1 provides a marker for identifying gastric cancers with poor prognosis, and suggest that PLAC1/CP1 may provide a useful target for immunotherapy. (PMID:26157147)
- PLAC1 was mainly expressed in the human villous syncytiotrophoblast (STB) layer throughout gestation, and the expression level of PLAC1 was significantly elevated during human trophoblast syncytialization. (PMID:27692364)
- Plac1 plays a pivotal role in the progression of HCC, and may serve as a novel therapeutic target for Hepatocellular carcinoma. (PMID:27878289)
- Optimized protocol for soluble prokaryotic expression, purification and structural analysis of human placenta specific-1(PLAC1). (PMID:28315746)
- we show that PLAC1 transcript number is significantly negatively correlated with patient survival in our samples. Thus, we suggest that characterizing tumors for TP53 mutation status, p53 protein status and PLAC1 transcription could be used to predict likely prognosis and inform treatment options in patients diagnosed with serous ovarian cancer. (PMID:28339050)
- this paper shows that PLAC1 immunization does not induce infertility in mice (PMID:28351180)
- This study demonstrated that the protein expression of PLAC1 was significantly associated with decreased overall survival in patients with pancreatic ductal adenocarcinoma, indicating that it was a valuable prognostic marker for pancreatic ductal adenocarcinoma and might be a potential target for immunotherapy. (PMID:28618924)
- Screening for these five CTAs and PLAC1 by RTqPCR may offer a potentially valuable prognostic tool with good sensitivity and specificity in patients with Hepatocellular carcinoma (HCC) that may be enhanced by magneticactivated cell sorting . (PMID:28849093)
- Study revealed that PLAC1 expression was highly expressed in non-small cell lung cancer (NSCLC) tissues, suggesting that PLAC1 may be a prognostic factor and higher risk for NSCLC patients. PLAC1 was involved in regulation of the proliferation, migration, and invasion abilities of NSCLC cells partly through regulation of epithelial-mesenchymal transition and the AKT pathway. (PMID:29138842)
- There was no significant correlation of serum PLAC1 levels with race, age at diagnosis, body mass index (BMI) or the presence of metastatic disease. It remains to be determined whether PLAC1 serum levels can serve as a diagnostic biomarker for the presence or recurrence of disease post-surgery and/or therapy (PMID:29432428)
- The findings suggest a possible pathophysiological link between the development of Fetal growth restriction and the expression of PAPPA, PAPPA2 and PLAC-1. (PMID:29532882)
- These findings suggest that functional interaction between Plac1 and Furin enhances breast cancer invasion and metastasis and the Furin/Notch1 intracellular domain (NICD) /PTEN axis may act as an important therapeutic target for breast cancer treatment. (PMID:29704427)
- Placenta-specific protein 1 enhances liver metastatic potential and is associated with the PI3K/AKT/NF-kappaB signaling pathway in colorectal cancer. (PMID:32701605)
- High expression of PLAC1 in colon cancer as a predictor of poor prognosis: A study based on TCGA data. (PMID:32827679)
- Plac1 promotes nasopharyngeal carcinoma cells proliferation, migration and invasion via Furin/NICD/PTEN pathway. (PMID:33418237)
- Expression of placenta-specific 1 and its potential for eliciting anti-tumor helper T-cell responses in head and neck squamous cell carcinoma. (PMID:33457076)
- PLAC1 Regulates the Occurrence of Fetal Growth Restriction by Inhibiting the Apoptosis of Trophoblast Cells. (PMID:33941557)
- Expression level of PLAC1 in osteosarcoma patients and its regulatory effect on the development of osteosarcoma. (PMID:34077010)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Plac1 | ENSMUSG00000061082 |
| rattus_norvegicus | Plac1 | ENSRNOG00000002379 |
Paralogs (2): OOSP2 (ENSG00000149507), OOSP1 (ENSG00000284873)
Protein
Protein identifiers
Placenta-specific protein 1 — Q9HBJ0 (reviewed: Q9HBJ0)
All UniProt accessions (1): Q9HBJ0
UniProt curated annotations — full annotation on UniProt →
Function. May play a role in placental development.
Subcellular location. Secreted.
Tissue specificity. Expressed in placenta. Localizes primarily to differentiated syncytiotrophoblast throughout gestation as well as to a small population of villous cytotrophoblasts. Also detected in maternal blood and rapidly disappears following delivery, but is not detected in other adult or fetal tissues examined.
Induction. Up-regulated during trophoblast differentiation and by FGF7 in trophoblast cells.
Similarity. Belongs to the PLAC1 family.
RefSeq proteins (4): NP_001303816, NP_001303817, NP_001303818, NP_068568* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR033222 | PLAC1_fam | Family |
| IPR055356 | ZP-N | Domain |
Pfam: PF23344
UniProt features (2 total): signal peptide 1, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9HBJ0-F1 | 70.47 | 0.39 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 75 (showing top):
GAANYNYGACNY_UNKNOWN, CAGCTG_AP4_Q5, EVI1_05, MARTINEZ_RB1_TARGETS_DN, GATA6_01, HEN1_01, GNF2_KISS1, GOBP_PLACENTA_DEVELOPMENT, GRYDER_PAX3FOXO1_ENHANCERS_IN_TADS, MARTINEZ_RB1_AND_TP53_TARGETS_UP, EVI1_03, GATA_Q6, SENESE_HDAC3_TARGETS_DN, TGGAAA_NFAT_Q4_01, AP1FJ_Q2
GO Biological Process (1): placenta development (GO:0001890)
GO Molecular Function (0):
GO Cellular Component (1): extracellular region (GO:0005576)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| animal organ development | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
506 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PLAC1 | ZP3 | P21754 | 885 |
| PLAC1 | HPRT1 | P00492 | 718 |
| PLAC1 | PAPPA | Q13219 | 520 |
| PLAC1 | ZP1 | P60852 | 491 |
| PLAC1 | KISS1 | Q15726 | 476 |
| PLAC1 | GCM1 | Q9NP62 | 473 |
| PLAC1 | MID1 | O15344 | 466 |
| PLAC1 | PHF6 | Q8IWS0 | 456 |
| PLAC1 | ADAM12 | O43184 | 449 |
| PLAC1 | GPC3 | P51654 | 448 |
| PLAC1 | PAPPA2 | Q9BXP8 | 439 |
| PLAC1 | PRY | O14603 | 432 |
| PLAC1 | CRH | P06850 | 429 |
| PLAC1 | MTNAP1 | Q9BSJ5 | 400 |
| PLAC1 | INSL4 | Q14641 | 374 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PLAC1 | OBSL1 | psi-mi:“MI:0914”(association) | 0.350 |
| ST14 | LIPT2 | psi-mi:“MI:0914”(association) | 0.350 |
| GPIHBP1 | SAC3D1 | psi-mi:“MI:0914”(association) | 0.350 |
| CGB5 | IGSF3 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC25A14 | PLOD3 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (57): EP400 (Affinity Capture-MS), MEAF6 (Affinity Capture-MS), EPC2 (Affinity Capture-MS), TRRAP (Affinity Capture-MS), BRD8 (Affinity Capture-MS), VPS72 (Affinity Capture-MS), ING3 (Affinity Capture-MS), DMAP1 (Affinity Capture-MS), OBSL1 (Affinity Capture-MS), EPC1 (Affinity Capture-MS), TADA1 (Affinity Capture-MS), MBTD1 (Affinity Capture-MS), MRGBP (Affinity Capture-MS), KAT5 (Affinity Capture-MS), YEATS4 (Affinity Capture-MS)
ESM2 similar proteins: A0A0A6YXX9, A0A1Z2R986, A0A2R8Y4Y8, A0A2R8YFL7, A0A2R8YFM6, A0A8J1K1A4, A6MFL5, A6MFL6, A6MFL7, A6NHS7, A8MZH6, F8RKW5, G5E8D7, O54767, O77726, O88393, P17219, P20239, P26342, P34128, P35054, P42099, P47983, P47984, P70041, Q03167, Q05996, Q07G34, Q14CH0, Q1W7Q6, Q2Q0J1, Q3HXY1, Q3HXY2, Q3HXY3, Q3HXY4, Q3HXY5, Q3HXY6, Q3HXY8, Q3HXZ1, Q4FZG8
Diamond homologs: A0A2R8YFL7, Q2Q0J1, Q9HBJ0, A0A2R8Y4Y8, A0A2R8YFM6, A8MZH6, Q4FZG8, Q4V7E2, Q86WS3, Q9JI83
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
30 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 18 |
| Likely benign | 2 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
643 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:134602046:CTAA:C | donor_loss | 0.9900 |
| X:134602047:TAA:T | donor_loss | 0.9900 |
| X:134602048:AAC:A | donor_loss | 0.9900 |
| X:134602049:A:T | donor_loss | 0.9900 |
| X:134602050:CCTTC:C | donor_loss | 0.9900 |
| X:134602123:C:CC | acceptor_gain | 0.9900 |
| X:134643789:A:AC | donor_gain | 0.9900 |
| X:134566741:C:CC | acceptor_gain | 0.9800 |
| X:134583781:T:A | donor_gain | 0.9800 |
| X:134602043:AAACT:A | donor_loss | 0.9800 |
| X:134602044:AACTA:A | donor_loss | 0.9800 |
| X:134602045:ACT:A | donor_loss | 0.9800 |
| X:134602120:CAG:C | acceptor_gain | 0.9800 |
| X:134602120:CAGCT:C | acceptor_loss | 0.9800 |
| X:134602122:GCT:G | acceptor_loss | 0.9800 |
| X:134602123:CT:C | acceptor_loss | 0.9800 |
| X:134602124:T:G | acceptor_loss | 0.9800 |
| X:134643760:T:A | donor_gain | 0.9700 |
| X:134643785:A:AC | donor_gain | 0.9700 |
| X:134643786:C:CC | donor_gain | 0.9700 |
| X:134643790:A:C | donor_gain | 0.9700 |
| X:134658323:CTTA:C | donor_loss | 0.9700 |
| X:134658324:TTACC:T | donor_loss | 0.9700 |
| X:134658325:TACCT:T | donor_loss | 0.9700 |
| X:134658326:A:C | donor_loss | 0.9700 |
| X:134658327:CCTG:C | donor_gain | 0.9700 |
| X:134658322:ACTT:A | donor_loss | 0.9600 |
| X:134658326:ACCTG:A | donor_gain | 0.9600 |
| X:134658327:CCTGC:C | donor_gain | 0.9600 |
| X:134566739:TT:T | acceptor_gain | 0.9500 |
AlphaMissense
1417 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| X:134566465:A:G | F73S | 0.994 |
| X:134566464:G:C | F73L | 0.985 |
| X:134566464:G:T | F73L | 0.985 |
| X:134566466:A:G | F73L | 0.985 |
| X:134566444:C:G | C80S | 0.984 |
| X:134566445:A:T | C80S | 0.984 |
| X:134566465:A:C | F73C | 0.983 |
| X:134566403:A:C | Y94D | 0.982 |
| X:134566445:A:G | C80R | 0.978 |
| X:134566579:A:G | F35S | 0.977 |
| X:134566501:C:G | C61S | 0.973 |
| X:134566502:A:G | C61R | 0.973 |
| X:134566502:A:T | C61S | 0.973 |
| X:134566438:A:G | I82T | 0.971 |
| X:134566513:A:G | L57S | 0.970 |
| X:134566460:A:C | Y75D | 0.967 |
| X:134566594:C:G | C30S | 0.965 |
| X:134566595:A:T | C30S | 0.965 |
| X:134566340:A:G | C115R | 0.961 |
| X:134566511:C:G | G58R | 0.961 |
| X:134566443:A:C | C80W | 0.959 |
| X:134566592:A:G | S31P | 0.959 |
| X:134566339:C:G | C115S | 0.958 |
| X:134566340:A:T | C115S | 0.958 |
| X:134566444:C:A | C80F | 0.958 |
| X:134566511:C:A | G58C | 0.958 |
| X:134566573:A:T | V37D | 0.958 |
| X:134566466:A:C | F73V | 0.957 |
| X:134566510:C:A | G58V | 0.957 |
| X:134566519:A:G | L55P | 0.957 |
dbSNP variants (sampled 300 via entrez): RS1000002593 (X:134573673 G>A), RS1000071479 (X:134672344 C>A), RS1000082839 (X:134745196 C>A), RS1000084419 (X:134660352 C>T), RS1000086268 (X:134678702 G>T), RS1000090527 (X:134590009 C>T), RS1000122897 (X:134647751 T>C), RS1000150953 (X:134665673 C>T), RS1000154763 (X:134732544 C>A), RS1000160756 (X:134665184 A>G), RS1000164811 (X:134756944 A>G), RS1000182980 (X:134639831 C>T), RS1000192552 (X:134599173 A>G), RS1000216313 (X:134734097 C>T), RS1000217680 (X:134742575 G>A,T)
Disease associations
OMIM: gene MIM:300296 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST007557_1 | Birth weight | 1.000000e-09 |
| GCST008161_113 | Waist circumference adjusted for body mass index | 3.000000e-07 |
| GCST008362_135 | Birth weight | 3.000000e-14 |
| GCST90002383_124 | Hematocrit | 7.000000e-10 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004344 | birth weight |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0004348 | hematocrit |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
34 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 7 |
| bisphenol A | affects expression, increases expression | 2 |
| sodium arsenite | decreases expression, increases expression | 2 |
| entinostat | increases expression, affects cotreatment | 2 |
| Estradiol | increases expression, increases reaction | 2 |
| Cadmium Chloride | increases expression, decreases expression, increases abundance | 2 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| titanium dioxide | increases expression | 1 |
| trichostatin A | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| pentanal | increases expression | 1 |
| 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one | decreases reaction, increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| bisphenol S | increases methylation | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| NVP-BKM120 | affects cotreatment, decreases expression | 1 |
| Wortmannin | decreases reaction, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Vorinostat | increases expression | 1 |
| Aldehydes | increases expression | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Testosterone | affects cotreatment, increases expression, decreases expression | 1 |
| Tetrachlorodibenzodioxin | decreases expression | 1 |
| Tretinoin | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.