PLCE1
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Also known as KIAA1516PLCENPHS3
Summary
PLCE1 (phospholipase C epsilon 1, HGNC:17175) is a protein-coding gene on chromosome 10q23.33, encoding 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 (Q9P212). The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
This gene encodes a phospholipase enzyme that catalyzes the hydrolysis of phosphatidylinositol-4,5-bisphosphate to generate two second messengers: inositol 1,4,5-triphosphate (IP3) and diacylglycerol (DAG). These second messengers subsequently regulate various processes affecting cell growth, differentiation, and gene expression. This enzyme is regulated by small monomeric GTPases of the Ras and Rho families and by heterotrimeric G proteins. In addition to its phospholipase C catalytic activity, this enzyme has an N-terminal domain with guanine nucleotide exchange (GEF) activity. Mutations in this gene cause early-onset nephrotic syndrome; characterized by proteinuria, edema, and diffuse mesangial sclerosis or focal and segmental glomerulosclerosis. Alternative splicing results in multiple transcript variants encoding distinct isoforms.
Source: NCBI Gene 51196 — RefSeq curated summary.
At a glance
- Gene–disease (curated): nephrotic syndrome, type 3 (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 88
- Clinical variants (ClinVar): 922 total — 34 pathogenic, 23 likely-pathogenic
- Phenotypes (HPO): 23
- MANE Select transcript:
NM_016341
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17175 |
| Approved symbol | PLCE1 |
| Name | phospholipase C epsilon 1 |
| Location | 10q23.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1516, PLCE, NPHS3 |
| Ensembl gene | ENSG00000138193 |
| Ensembl biotype | protein_coding |
| OMIM | 608414 |
| Entrez | 51196 |
Gene structure
Transcript identifiers
Ensembl transcripts: 26 — 12 protein_coding, 7 retained_intron, 5 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined
ENST00000371375, ENST00000371380, ENST00000371385, ENST00000432707, ENST00000674738, ENST00000674827, ENST00000675218, ENST00000675487, ENST00000675718, ENST00000676102, ENST00000685132, ENST00000685253, ENST00000685889, ENST00000686807, ENST00000686954, ENST00000687948, ENST00000688810, ENST00000689233, ENST00000689699, ENST00000689982, ENST00000690340, ENST00000692286, ENST00000692396, ENST00000875450, ENST00000875451, ENST00000875452
RefSeq mRNA: 3 — MANE Select: NM_016341
NM_001165979, NM_001288989, NM_016341
CCDS: CCDS41552, CCDS53555, CCDS91304
Canonical transcript exons
ENST00000371380 — 33 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000715658 | 94235915 | 94236120 |
| ENSE00000715713 | 94259014 | 94259150 |
| ENSE00000715716 | 94262494 | 94262732 |
| ENSE00000810824 | 94252316 | 94252498 |
| ENSE00000932999 | 94227306 | 94227451 |
| ENSE00000933000 | 94234054 | 94234312 |
| ENSE00000933001 | 94265647 | 94265708 |
| ENSE00000933002 | 94265793 | 94265958 |
| ENSE00000933003 | 94268929 | 94269036 |
| ENSE00000933004 | 94270486 | 94270602 |
| ENSE00000933005 | 94273562 | 94273720 |
| ENSE00000933008 | 94284848 | 94284965 |
| ENSE00000933010 | 94298379 | 94298669 |
| ENSE00000933011 | 94304482 | 94304645 |
| ENSE00000933012 | 94306427 | 94306688 |
| ENSE00000933013 | 94308581 | 94308699 |
| ENSE00000933014 | 94313254 | 94313382 |
| ENSE00000933015 | 94316547 | 94316756 |
| ENSE00000933016 | 94321901 | 94322059 |
| ENSE00000933017 | 94324349 | 94324567 |
| ENSE00000986533 | 94132174 | 94132459 |
| ENSE00000986534 | 94171180 | 94171496 |
| ENSE00000986536 | 94254190 | 94254307 |
| ENSE00001123760 | 94283790 | 94283911 |
| ENSE00001123767 | 94279782 | 94279911 |
| ENSE00001123834 | 94293508 | 94293639 |
| ENSE00001123911 | 94258800 | 94258922 |
| ENSE00001123919 | 94254893 | 94255049 |
| ENSE00001123935 | 94245946 | 94246621 |
| ENSE00001455103 | 94030683 | 94032252 |
| ENSE00001455108 | 94324892 | 94325104 |
| ENSE00003711053 | 94327968 | 94332823 |
| ENSE00003901571 | 93993931 | 93994258 |
Expression profiles
Bgee: expression breadth ubiquitous, 271 present calls, max score 96.97.
FANTOM5 (CAGE): breadth broad, TPM avg 4.2504 / max 232.1473, expressed in 840 samples.
FANTOM5 promoters (11 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 106303 | 2.3298 | 734 |
| 106310 | 0.3362 | 127 |
| 106306 | 0.3174 | 145 |
| 106305 | 0.2600 | 128 |
| 106309 | 0.2280 | 73 |
| 106301 | 0.2201 | 99 |
| 106300 | 0.1425 | 57 |
| 106307 | 0.1213 | 62 |
| 106302 | 0.1208 | 55 |
| 106304 | 0.1064 | 42 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| renal glomerulus | UBERON:0000074 | 96.97 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 96.67 | gold quality |
| ventricular zone | UBERON:0003053 | 95.94 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 93.98 | gold quality |
| colonic mucosa | UBERON:0000317 | 90.27 | gold quality |
| ganglionic eminence | UBERON:0004023 | 89.86 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 89.50 | gold quality |
| popliteal artery | UBERON:0002250 | 88.78 | gold quality |
| tibial artery | UBERON:0007610 | 88.78 | gold quality |
| blood vessel layer | UBERON:0004797 | 87.70 | gold quality |
| islet of Langerhans | UBERON:0000006 | 87.21 | gold quality |
| parotid gland | UBERON:0001831 | 86.93 | gold quality |
| rectum | UBERON:0001052 | 86.38 | gold quality |
| cranial nerve II | UBERON:0000941 | 86.24 | gold quality |
| metanephros | UBERON:0000081 | 86.20 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 86.02 | gold quality |
| endothelial cell | CL:0000115 | 85.96 | gold quality |
| aorta | UBERON:0000947 | 85.90 | gold quality |
| transverse colon | UBERON:0001157 | 85.66 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 85.46 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 85.44 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.13 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 84.74 | gold quality |
| cardiac atrium | UBERON:0002081 | 84.31 | gold quality |
| sural nerve | UBERON:0015488 | 84.21 | gold quality |
| right atrium auricular region | UBERON:0006631 | 84.15 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 84.12 | gold quality |
| apex of heart | UBERON:0002098 | 83.76 | gold quality |
| large intestine | UBERON:0000059 | 83.49 | gold quality |
| left coronary artery | UBERON:0001626 | 83.47 | gold quality |
Single-cell (SCXA)
Detected in 10 experiment(s), a significant marker in 9.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ENAD-27 | yes | 851.33 |
| E-GEOD-81608 | yes | 783.28 |
| E-CURD-119 | yes | 34.55 |
| E-MTAB-5061 | yes | 28.31 |
| E-HCAD-31 | yes | 25.62 |
| E-GEOD-81547 | yes | 21.42 |
| E-HCAD-10 | yes | 17.96 |
| E-ANND-3 | yes | 10.93 |
| E-HCAD-35 | yes | 7.63 |
| E-MTAB-6142 | no | 90.91 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NR2E1
miRNA regulators (miRDB)
31 targeting PLCE1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-3912-5P | 99.95 | 66.11 | 925 |
| HSA-MIR-9718 | 99.94 | 68.91 | 918 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-3180-5P | 99.82 | 69.12 | 2422 |
| HSA-MIR-6885-3P | 99.75 | 70.36 | 3187 |
| HSA-MIR-545-5P | 99.66 | 70.18 | 2308 |
| HSA-MIR-6762-3P | 99.66 | 66.94 | 1188 |
| HSA-MIR-4502 | 99.65 | 66.99 | 1021 |
| HSA-MIR-6516-3P | 99.65 | 68.57 | 1238 |
| HSA-MIR-561-3P | 99.64 | 70.90 | 3647 |
| HSA-MIR-6733-3P | 99.54 | 67.80 | 1281 |
| HSA-MIR-4325 | 99.49 | 72.20 | 1342 |
| HSA-MIR-889-5P | 99.41 | 68.75 | 1025 |
| HSA-MIR-6719-3P | 99.29 | 67.78 | 1387 |
| HSA-MIR-412-3P | 98.86 | 66.89 | 712 |
| HSA-MIR-6754-3P | 98.84 | 66.60 | 889 |
| HSA-MIR-6794-3P | 98.76 | 66.99 | 894 |
| HSA-MIR-6755-3P | 98.61 | 66.90 | 834 |
| HSA-MIR-628-5P | 98.36 | 67.74 | 844 |
| HSA-MIR-93-3P | 98.15 | 66.65 | 1309 |
| HSA-MIR-18B-3P | 98.05 | 65.55 | 595 |
| HSA-MIR-1285-5P | 98.01 | 68.71 | 779 |
| HSA-MIR-6765-3P | 97.83 | 64.59 | 1165 |
| HSA-MIR-7703 | 97.64 | 67.00 | 965 |
| HSA-MIR-6851-3P | 95.73 | 65.11 | 688 |
Literature-anchored findings (GeneRIF, showing 40)
- Stimulation of phospholipase C-epsilon by the M3 muscarinic acetylcholine receptor mediated by cyclic AMP and the GTPase Rap2B (PMID:11877431)
- phospholipase C signal is suggested to be critical for survival and growth of cells (PMID:12444546)
- Gi-coupled receptors can inhibit PLC-epsilon. (PMID:15157671)
- diversity introduced by splice variants could play an important role in PLCepsilon regulation (PMID:15558028)
- R-Ras regulates organization of actin and drives membrane protrusions through the activitiy of PLCE. (PMID:16537651)
- CD44 interaction with LARG and EGFR plays a pivotal role in Rho/Ras co-activation, PLC epsilon-Ca2+ signaling, and Raf/ERK up-regulation required for CaMKII-mediated cytoskeleton function and in head and neck squamous cell carcinoma progression (PMID:16565089)
- Mutations cause early onset nephrotic syndrome. May play a critical role in glomerular development. Review. (PMID:17449496)
- BRAF interacts with PLCepsilon1 in nephrotic syndrome type 3. Both proteins are coexpressed and colocalize in developing and mature glomerular podocytes. (PMID:17942568)
- mutations in PLCE1 may serve as a biomarker for selecting patients with IDMS who may benefit from treatment. (PMID:18065803)
- Discuss the recent identification of autosomal recessive nephrotic syndrome type 3 (NPHS3) caused by mutations in the phospholipase PLCE1 gene has, for the first time, shown steroid responsiveness in childhood nephrotic syndrome. (Editorial) (PMID:18270750)
- PLCE1/NPHS3 mutations are not a cause of focal and segmental glomerulosclerosis in this cohort study (PMID:18975016)
- nonpenetrance may be due to compensatory mutations at a second locus and mutation within PLCE1 is not always sufficient to cause diffuse mesangial sclerosis. (PMID:19037252)
- This study demonstrated that PLCE1 might be a new tumor suppressor gene related to sporadic colorectal cancer. (PMID:19260473)
- Homozygous or compound heterozygous mutations were identified in 33% (8/24) of diffuse mesangial sclerosis (DMS) cases. PLCE1 mutations were found in 8% (6/78) of FSGS cases without NPHS2 mutations. (PMID:20591883)
- Silencing of PLCE1 might downregulate the level of MMP and BCL2 gene expression, decreasing the invasive power of bladder cancer T24 cells and thus inhibiting tumor development. (PMID:20620593)
- Shared susceptibility locus in PLCE1 at 10q23 for gastric adenocarcinoma and esophageal squamous cell carcinoma. (PMID:20729852)
- Suscptibility loci at PLCE1 for esophageal squamous cell carcinoma. (PMID:20729853)
- Case Report: Report respiratory-chain deficiency presenting as diffuse mesangial sclerosis with NPHS3 mutation. (PMID:21365190)
- Loss of PLCE1 is associated with colorectal cancer. (PMID:21667163)
- None of 3 SNPs was alone significantly associated with overall risk of SCCHN, the combined effects of rs2274223G, rs3203713G & rs11599672G were associated with risk of SCCHN in a locus-dose effect manner. (PMID:21689432)
- The knockdown of PLCepsilon by shRNA could inhibit bladder tumor growth and might be an alternative approach for human bladder cancer therapy (PMID:21705050)
- The PLCE1 single nucleotide polymorphism rs2274223 was associated with significantly improved gastric cancer survival in a Chinese population. (PMID:21837401)
- Significantly deregulated pathways in colorectal cancer were identified and repression of PLCD1 and PLCE1 expression, was validated. (PMID:21909432)
- These results suggest that PLCe constitutes a signaling pathway distinct from the NF-jB pathway and that this pathway and the NF-jB pathway exert a synergistic effect on the TNFa-stimulated CCL2 expression in keratinocytes. (PMID:21951843)
- identify two loci associated with susceptibility to DSS in people with dengue, suggesting possible mechanisms for this severe complication of dengue (PMID:22001756)
- Single Nucleotide Polymorphisms in PLCE1 resulting in reduce gene expression are associated with esophageal squamous cell carcinoma. (PMID:22203178)
- genetic variations in PLCE1 may contribute to gastric adenocarcinoma risk in an eastern Chinese population. (PMID:22412849)
- These findings indicated that functional polymorphisms PLCE1 rs2274223 might contribute to esophageal cancer susceptibility. (PMID:22744421)
- rs2274223 polymorphisms in PLCE1 is associated with esophageal squamous cell carcinoma. (PMID:22805490)
- PLCE1 gene variants are associated with esophageal squamous cell carcinoma. (PMID:22865593)
- the PLCepsilon1 rs2274223 SNP might be an effective genetic marker to assess the risk of esophageal squamous cell carcinoma in individuals with a upper gastrointestinal cancer family history from a region of high incidence in northern China (PMID:23079034)
- It is unlikely that the PLCE1 rs2274223 and RFT2 13042395 SNPs play a role in esophageal adenocarcinoma or esophageal squamous cell carcinoma susceptibility in Dutch Caucasians. (PMID:23222411)
- A sequence variant in the phospholipase C epsilon C2 domain is associated with esophageal carcinoma and esophagitis. (PMID:23390063)
- the MICB rs3132468 and PLCE1 rs3740360 genotypes are associated with clinically apparent dengue in both adults and children. (PMID:23536857)
- PLCE1 overexpression correlates with lymph node metastasis and advanced tumor-node-metastasis stages of Kazakh esophageal squamous cell carcinoma. (PMID:23659763)
- Results further confirmed that genetic variations in PLCE1 may contribute to ESCC risk associated with tobacco exposure in a central Chinese population. (PMID:23688607)
- Studies suggest phospholipase C epsilon 1 gene (PLCE1) polymorphism conferred significant risk among Asian (Chinese) but not in Caucasian. (PMID:23797815)
- the PLCE1 rs2274223 polymorphism was confirmed to have a statistically significant association with an increasing risk of squamous cell carcinoma and gastric cancer. (PMID:23826241)
- Meta-analysis results indicated that PLCE1 rs2274223 G allele significantly contributed to the risk of ESCC and GCA, especially in Chinese population. (PMID:23874915)
- PLCvarepsilon and the RASSF family play roles in tumour suppression. [review] (PMID:23958207)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | plce1 | ENSDARG00000087921 |
| mus_musculus | Plce1 | ENSMUSG00000024998 |
| rattus_norvegicus | Plce1 | ENSRNOG00000014276 |
| drosophila_melanogaster | Plc21C | FBGN0004611 |
| caenorhabditis_elegans | WBGENE00004036 |
Paralogs (14): PLCB4 (ENSG00000101333), PLCH1 (ENSG00000114805), PLCD4 (ENSG00000115556), PLCL1 (ENSG00000115896), PLCG1 (ENSG00000124181), PLCB2 (ENSG00000137841), PLCZ1 (ENSG00000139151), PLCH2 (ENSG00000149527), PLCB3 (ENSG00000149782), PLCL2 (ENSG00000154822), PLCD3 (ENSG00000161714), PLCB1 (ENSG00000182621), PLCD1 (ENSG00000187091), PLCG2 (ENSG00000197943)
Protein
Protein identifiers
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 — Q9P212 (reviewed: Q9P212)
Alternative names: Pancreas-enriched phospholipase C, Phosphoinositide phospholipase C-epsilon-1, Phospholipase C-epsilon-1
All UniProt accessions (12): Q9P212, A0A6Q8PFG0, A0A6Q8PGT4, A0A6Q8PH04, A0A6Q8PHN3, A0A6Q8PHP9, A0A7I2PPM5, A0A8I5KQ92, A0A8I5KV08, A0A8I5KVG7, A0A8I5KXT2, B7ZM61
UniProt curated annotations — full annotation on UniProt →
Function. The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. PLCE1 is a bifunctional enzyme which also regulates small GTPases of the Ras superfamily through its Ras guanine-exchange factor (RasGEF) activity. As an effector of heterotrimeric and small G-protein, it may play a role in cell survival, cell growth, actin organization and T-cell activation. In podocytes, is involved in the regulation of lamellipodia formation. Acts downstream of AVIL to allow ARP2/3 complex assembly.
Subunit / interactions. Interacts with RHOA. Interacts with GTP-bound HRAS, RAP1A, RAP2A, RAP2B and RRAS. Interacts with AVIL. Interacts with IQGAP1.
Subcellular location. Cytoplasm. Cytosol. Cell membrane. Golgi apparatus membrane. Cell projection. Lamellipodium.
Tissue specificity. Widely expressed. Expressed in podocytes. Broadly expressed and only absent in peripheral blood leukocytes. Specifically expressed in placenta, lung and spleen.
Disease relevance. Nephrotic syndrome 3 (NPHS3) [MIM:610725] A form of nephrotic syndrome, a renal disease clinically characterized by severe proteinuria, resulting in complications such as hypoalbuminemia, hyperlipidemia and edema. Kidney biopsies show non-specific histologic changes such as focal segmental glomerulosclerosis and diffuse mesangial proliferation. Some affected individuals have an inherited steroid-resistant form and progress to end-stage renal failure. Most patients with NPHS3 show diffuse mesangial sclerosis on renal biopsy, which is a pathologic entity characterized by mesangial matrix expansion with no mesangial hypercellularity, hypertrophy of the podocytes, vacuolized podocytes, thickened basement membranes, and diminished patency of the capillary lumen. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Activated by the heterotrimeric G-protein subunits GNA12, GNA13 and GNB1-GNG2. Activated by HRAS, RAP1A, RHOA, RHOB, RHOC, RRAS and RRAS2. Activated by the G(s)-coupled GPCRs ADRB2, PTGER1 and CHRM3 through cyclic-AMP formation and RAP2B activation. Inhibited by G(i)-coupled GPCRs.
Domain organisation. The Ras-associating domain 1 is degenerated and may not bind HRAS. The Ras-associating domain 2 mediates interaction with GTP-bound HRAS, RAP1A, RAP2A and RAP2B and recruitment of HRAS to the cell membrane. The Ras-GEF domain has a GEF activity towards HRAS and RAP1A. Mediates activation of the mitogen-activated protein kinase pathway.
Induction. Overexpressed during heart failure.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9P212-1 | 1, PLCepsilon1a | yes |
| Q9P212-2 | 2, PLCepsilon1b |
RefSeq proteins (3): NP_001159451, NP_001275918, NP_057425* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000008 | C2_dom | Domain |
| IPR000159 | RA_dom | Domain |
| IPR000909 | PLipase_C_PInositol-sp_X_dom | Domain |
| IPR001192 | PI-PLC_fam | Family |
| IPR001711 | PLipase_C_Pinositol-sp_Y | Domain |
| IPR001895 | RASGEF_cat_dom | Domain |
| IPR011992 | EF-hand-dom_pair | Homologous_superfamily |
| IPR015359 | PLC_EF-hand-like | Domain |
| IPR017946 | PLC-like_Pdiesterase_TIM-brl | Homologous_superfamily |
| IPR023578 | Ras_GEF_dom_sf | Homologous_superfamily |
| IPR028398 | PLC-epsilon1_RA2 | Domain |
| IPR029071 | Ubiquitin-like_domsf | Homologous_superfamily |
| IPR035892 | C2_domain_sf | Homologous_superfamily |
| IPR036964 | RASGEF_cat_dom_sf | Homologous_superfamily |
| IPR046973 | PLC-epsilon1_cat | Domain |
| IPR046974 | PLC_epsilon1_EF | Domain |
Pfam: PF00168, PF00387, PF00388, PF00617, PF00788, PF09279
Enzyme classification (BRENDA):
- EC 3.1.4.11 — phosphoinositide phospholipase C (BRENDA: 69 organisms, 175 substrates, 159 inhibitors, 27 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
5 substrates with measured Km, best-characterized 5. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| 1-PHOSPHATIDYL-1D-MYO-INOSITOL 4,5-BISPHOSPHATE | 0.006–0.45 | 8 |
| PHOSPHATIDYLINOSITOL | 0.012–100 | 7 |
| 1-PHOSPHATIDYL-1D-MYO-INOSITOL | 0.058–18.7 | 6 |
| PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE | 0.031–0.182 | 3 |
| PHOSPHATIDYLINOSITOL 4-PHOSPHATE | 0.031 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-4,5-bisphosphate) + H2O = 1D-myo-inositol 1,4,5-trisphosphate + a 1,2-diacyl-sn-glycerol + H(+) (RHEA:33179)
UniProt features (75 total): strand 14, sequence conflict 11, compositionally biased region 9, sequence variant 8, mutagenesis site 7, domain 6, helix 6, region of interest 5, turn 3, active site 2, splice variant 2, chain 1, modified residue 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2C5L | X-RAY DIFFRACTION | 1.9 |
| 2BYE | SOLUTION NMR | |
| 2BYF | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9P212-F1 | 61.01 | 0.27 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 1407; 1452
Post-translational modifications (1): 1096
Mutagenesis-validated functional residues (7):
| Position | Phenotype |
|---|---|
| 1452 | loss of the phospholipase c enzymatic activity. still activates hras and the map kinase pathway. |
| 2140 | increases 2.8-fold the affinity for hras. |
| 2148 | decreases 17.5-fold the affinity for hras. |
| 2148 | increases 1.4-fold the affinity for hras. |
| 2150 | abolishes interaction with hras. |
| 2171 | no effect on hras-binding. |
| 2174 | reduces hras-binding. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-1855204 | Synthesis of IP3 and IP4 in the cytosol |
MSigDB gene sets: 239 (showing top):
GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, GOBP_PHOSPHATIDYLINOSITOL_METABOLIC_PROCESS, DACOSTA_UV_RESPONSE_VIA_ERCC3_XPCS_DN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOMF_GTPASE_BINDING, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOBP_REGULATION_OF_LAMELLIPODIUM_ASSEMBLY, GOBP_MONOATOMIC_CATION_TRANSPORT, SENESE_HDAC1_AND_HDAC2_TARGETS_DN, GOBP_GLYCEROLIPID_METABOLIC_PROCESS, GOBP_POSITIVE_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOBP_REGULATION_OF_CELL_PROJECTION_ORGANIZATION, WOO_LIVER_CANCER_RECURRENCE_UP, SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN
GO Biological Process (16): diacylglycerol biosynthetic process (GO:0006651), epidermal growth factor receptor signaling pathway (GO:0007173), G protein-coupled receptor signaling pathway (GO:0007186), phospholipase C-activating G protein-coupled receptor signaling pathway (GO:0007200), Ras protein signal transduction (GO:0007265), positive regulation of lamellipodium assembly (GO:0010592), lipid catabolic process (GO:0016042), calcium-mediated signaling (GO:0019722), glomerulus development (GO:0032835), intracellular signal transduction (GO:0035556), phosphatidylinositol metabolic process (GO:0046488), phosphatidylinositol-mediated signaling (GO:0048015), release of sequestered calcium ion into cytosol (GO:0051209), lipid metabolic process (GO:0006629), signal transduction (GO:0007165), small GTPase-mediated signal transduction (GO:0007264)
GO Molecular Function (9): phosphatidylinositol-4,5-bisphosphate phospholipase C activity (GO:0004435), C-type glycerophospholipase activity (GO:0004629), guanyl-nucleotide exchange factor activity (GO:0005085), enzyme binding (GO:0019899), small GTPase binding (GO:0031267), metal ion binding (GO:0046872), protein binding (GO:0005515), phosphoric diester hydrolase activity (GO:0008081), hydrolase activity (GO:0016787)
GO Cellular Component (8): Golgi membrane (GO:0000139), cytosol (GO:0005829), plasma membrane (GO:0005886), lamellipodium (GO:0030027), cytoplasm (GO:0005737), Golgi apparatus (GO:0005794), membrane (GO:0016020), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Inositol phosphate metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| signal transduction | 2 |
| intracellular signaling cassette | 2 |
| intracellular anatomical structure | 2 |
| cytoplasm | 2 |
| diacylglycerol metabolic process | 1 |
| acylglycerol biosynthetic process | 1 |
| ERBB signaling pathway | 1 |
| G protein-coupled receptor activity | 1 |
| G protein-coupled receptor signaling pathway | 1 |
| phospholipase C activator activity | 1 |
| small GTPase-mediated signal transduction | 1 |
| regulation of lamellipodium assembly | 1 |
| lamellipodium assembly | 1 |
| positive regulation of plasma membrane bounded cell projection assembly | 1 |
| positive regulation of lamellipodium organization | 1 |
| lipid metabolic process | 1 |
| catabolic process | 1 |
| anatomical structure development | 1 |
| nephron development | 1 |
| phosphorus metabolic process | 1 |
| intracellular signal transduction | 1 |
| intercellular transport | 1 |
| calcium ion transmembrane import into cytosol | 1 |
| primary metabolic process | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| C-type glycerophospholipase activity | 1 |
| glycerophospholipase activity | 1 |
| phosphoric diester hydrolase activity | 1 |
| GTP binding | 1 |
| GDP binding | 1 |
| GTPase regulator activity | 1 |
| protein binding | 1 |
| GTPase binding | 1 |
| cation binding | 1 |
| binding | 1 |
Protein interactions and networks
STRING
1520 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PLCE1 | NPHS1 | O60500 | 948 |
| PLCE1 | NPHS2 | Q9NP85 | 943 |
| PLCE1 | INF2 | Q27J81 | 920 |
| PLCE1 | CD2AP | Q9Y5K6 | 913 |
| PLCE1 | TRPC6 | Q9Y210 | 877 |
| PLCE1 | SLC52A3 | Q9NQ40 | 855 |
| PLCE1 | ACTN4 | O43707 | 824 |
| PLCE1 | WT1 | P19544 | 823 |
| PLCE1 | APOL1 | O14791 | 775 |
| PLCE1 | COQ6 | Q9Y2Z9 | 652 |
| PLCE1 | IQGAP1 | P46940 | 605 |
| PLCE1 | NOC3L | Q8WTT2 | 603 |
| PLCE1 | COQ2 | Q96H96 | 599 |
| PLCE1 | DLEC1 | Q9Y238 | 589 |
| PLCE1 | COQ8B | Q96D53 | 571 |
| PLCE1 | PDSS2 | Q86YH6 | 571 |
IntAct
11 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CSNK1A1 | FAM83G | psi-mi:“MI:0914”(association) | 0.900 |
| FKBP5 | IKBKB | psi-mi:“MI:0914”(association) | 0.640 |
| HSP90AA1 | USP19 | psi-mi:“MI:0914”(association) | 0.530 |
| PLCE1 | H1-0 | psi-mi:“MI:0915”(physical association) | 0.400 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| HSP90AA1 | URI1 | psi-mi:“MI:0914”(association) | 0.350 |
| CDC37 | MAP2K7 | psi-mi:“MI:0914”(association) | 0.350 |
| LIMS1 | PLCE1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| PLCE1 | NRAS | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (29): PLCE1 (Affinity Capture-MS), PLCE1 (Affinity Capture-MS), PLCE1 (Affinity Capture-RNA), PLCE1 (Synthetic Lethality), NRAS (Two-hybrid), PLCE1 (Proximity Label-MS), PLCE1 (Two-hybrid), PLCE1 (Two-hybrid), MDM2 (Affinity Capture-Western), TP53 (Affinity Capture-Western), PLCE1 (Affinity Capture-MS), PLCE1 (Affinity Capture-MS), PLCE1 (Affinity Capture-MS), PLCE1 (Affinity Capture-MS), PLCE1 (Cross-Linking-MS (XL-MS))
ESM2 similar proteins: A0A1L8EYB2, A0JMF7, A2AHC3, A3KMW7, A5D8S0, A5WUN7, B0S6S9, D3Z8E6, D3Z987, F1M5M3, F1MJR8, F1QB81, P70347, P97412, Q0P5X5, Q0VET5, Q15468, Q2M2Z5, Q2T9I9, Q3UEN2, Q3V0M2, Q49A88, Q49AJ0, Q5CZC0, Q5RA75, Q5RHB5, Q5SW75, Q5T5Y3, Q60664, Q6JPI3, Q6NRK3, Q6PUR7, Q71F56, Q76I76, Q7M6U3, Q7TSH4, Q8C753, Q8CCC3, Q8IWB6, Q8K2J4
Diamond homologs: A2AP18, A3KGF7, A5D6R3, G5EBH0, G5EFI8, O75038, O89040, P10687, P10688, P10894, P10895, P21671, P25455, P51178, P51432, Q00722, Q01970, Q07722, Q15111, Q15147, Q1RML2, Q2VRL0, Q32NH8, Q3USB7, Q4KWH5, Q4KWH8, Q4R6L3, Q5FX52, Q5RET0, Q62688, Q62711, Q6NMA7, Q7YRU3, Q86YW0, Q8K2J0, Q8K394, Q8K3R3, Q8K4D7, Q8K4S1, Q8L706
SIGNOR signaling
7 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CXCL1 | up-regulates | PLCE1 | binding |
| GNAQ | up-regulates | PLCE1 | binding |
| GNG12 | up-regulates | PLCE1 | binding |
| PLCE1 | up-regulates | 1,2-diacyl-sn-glycerol | “chemical modification” |
| RAP1A | “up-regulates quantity” | PLCE1 | binding |
| PLCE1 | up-regulates | HRAS | “guanine nucleotide exchange factor” |
| PLCE1 | up-regulates | PRKCA |
Disease & clinical
Clinical variants and AI predictions
ClinVar
922 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 34 |
| Likely pathogenic | 23 |
| Uncertain significance | 524 |
| Likely benign | 189 |
| Benign | 62 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1073097 | NM_016341.4(PLCE1):c.4192dup (p.Leu1398fs) | Pathogenic |
| 1179035 | NM_016341.4(PLCE1):c.4363dup (p.Thr1455fs) | Pathogenic |
| 1392260 | NM_016341.4(PLCE1):c.1339C>T (p.Arg447Ter) | Pathogenic |
| 1683685 | NM_016341.4(PLCE1):c.4477C>T (p.Gln1493Ter) | Pathogenic |
| 1686081 | NM_016341.4(PLCE1):c.1148C>A (p.Ser383Ter) | Pathogenic |
| 1686082 | NM_016341.4(PLCE1):c.5168-1G>A | Pathogenic |
| 1687166 | NM_016341.4(PLCE1):c.5363dup (p.Tyr1788Ter) | Pathogenic |
| 18423 | NM_016341.4(PLCE1):c.961C>T (p.Arg321Ter) | Pathogenic |
| 18424 | NM_016341.4(PLCE1):c.3736C>T (p.Arg1246Ter) | Pathogenic |
| 1929666 | NM_016341.4(PLCE1):c.5979del (p.Gly1994fs) | Pathogenic |
| 2344 | NM_016341.4(PLCE1):c.1146del (p.Ser383fs) | Pathogenic |
| 2345 | NM_016341.4(PLCE1):c.1477C>T (p.Arg493Ter) | Pathogenic |
| 2346 | NM_016341.4(PLCE1):c.3346C>T (p.Arg1116Ter) | Pathogenic |
| 2347 | NM_016341.4(PLCE1):c.3846del (p.Leu1283fs) | Pathogenic |
| 2348 | NM_016341.4(PLCE1):c.4846C>T (p.Gln1616Ter) | Pathogenic |
| 2349 | NM_016341.4(PLCE1):c.5560C>T (p.Gln1854Ter) | Pathogenic |
| 2350 | NM_016341.4(PLCE1):c.4451C>T (p.Ser1484Leu) | Pathogenic |
| 2577455 | NM_016341.4(PLCE1):c.1350_1353del (p.Cys451fs) | Pathogenic |
| 2579200 | GRCh38/hg38 10q23.33(chr10:94131004-94133482)x0 | Pathogenic |
| 2582223 | NM_016341.4(PLCE1):c.3610C>T (p.Gln1204Ter) | Pathogenic |
| 2681758 | NM_016341.4(PLCE1):c.5078_5079insGAGGAAAAGG (p.Ser1696fs) | Pathogenic |
| 2735459 | NM_016341.4(PLCE1):c.3169C>T (p.Arg1057Ter) | Pathogenic |
| 3076006 | NM_016341.4(PLCE1):c.1845dup (p.Gly616fs) | Pathogenic |
| 3244993 | NC_000010.10:g.(?96068318)(96076533_?)del | Pathogenic |
| 3376124 | NM_016341.4(PLCE1):c.3768del (p.Asn1257fs) | Pathogenic |
| 3700247 | NM_016341.4(PLCE1):c.2872_2873del (p.Val958fs) | Pathogenic |
| 3764576 | NM_016341.4(PLCE1):c.3982C>T (p.Gln1328Ter) | Pathogenic |
| 3775222 | NM_016341.4(PLCE1):c.5407del (p.Met1803fs) | Pathogenic |
| 4277922 | NM_016341.4(PLCE1):c.1115T>A (p.Leu372Ter) | Pathogenic |
| 4293375 | NM_016341.4(PLCE1):c.789C>A (p.Tyr263Ter) | Pathogenic |
SpliceAI
6840 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:94132169:CACA:C | acceptor_loss | 1.0000 |
| 10:94132171:CAGAT:C | acceptor_loss | 1.0000 |
| 10:94132172:A:AG | acceptor_gain | 1.0000 |
| 10:94132172:AG:A | acceptor_loss | 1.0000 |
| 10:94132173:G:GA | acceptor_loss | 1.0000 |
| 10:94132173:G:GG | acceptor_gain | 1.0000 |
| 10:94132173:GAT:G | acceptor_gain | 1.0000 |
| 10:94132457:AAGG:A | donor_loss | 1.0000 |
| 10:94132461:T:A | donor_loss | 1.0000 |
| 10:94171176:TTAG:T | acceptor_loss | 1.0000 |
| 10:94171177:TAG:T | acceptor_loss | 1.0000 |
| 10:94171178:A:AC | acceptor_loss | 1.0000 |
| 10:94171178:A:AG | acceptor_gain | 1.0000 |
| 10:94171179:G:GG | acceptor_gain | 1.0000 |
| 10:94171179:GAAC:G | acceptor_gain | 1.0000 |
| 10:94171495:AGGT:A | donor_loss | 1.0000 |
| 10:94171496:GGTAA:G | donor_loss | 1.0000 |
| 10:94171497:G:C | donor_loss | 1.0000 |
| 10:94171498:T:G | donor_loss | 1.0000 |
| 10:94227300:TTCCA:T | acceptor_loss | 1.0000 |
| 10:94227301:TCCA:T | acceptor_loss | 1.0000 |
| 10:94227302:CCAGG:C | acceptor_loss | 1.0000 |
| 10:94227303:CAG:C | acceptor_loss | 1.0000 |
| 10:94227304:AGG:A | acceptor_loss | 1.0000 |
| 10:94227305:G:A | acceptor_loss | 1.0000 |
| 10:94227431:G:GT | donor_gain | 1.0000 |
| 10:94235911:GTAGT:G | acceptor_loss | 1.0000 |
| 10:94235912:TAG:T | acceptor_loss | 1.0000 |
| 10:94235913:A:AG | acceptor_gain | 1.0000 |
| 10:94235913:A:C | acceptor_loss | 1.0000 |
AlphaMissense
15274 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:94258907:T:C | L1221P | 1.000 |
| 10:94262587:C:A | A1303D | 1.000 |
| 10:94265901:T:A | N1408K | 1.000 |
| 10:94265901:T:G | N1408K | 1.000 |
| 10:94265909:T:C | L1411P | 1.000 |
| 10:94268963:A:C | D1439A | 1.000 |
| 10:94268963:A:T | D1439V | 1.000 |
| 10:94268965:T:C | C1440R | 1.000 |
| 10:94268967:C:G | C1440W | 1.000 |
| 10:94268968:T:A | W1441R | 1.000 |
| 10:94268968:T:C | W1441R | 1.000 |
| 10:94268970:G:C | W1441C | 1.000 |
| 10:94268970:G:T | W1441C | 1.000 |
| 10:94269005:G:A | G1453E | 1.000 |
| 10:94270553:A:T | E1486V | 1.000 |
| 10:94270557:C:A | N1487K | 1.000 |
| 10:94270557:C:G | N1487K | 1.000 |
| 10:94270558:C:G | H1488D | 1.000 |
| 10:94270561:T:C | C1489R | 1.000 |
| 10:94270562:G:A | C1489Y | 1.000 |
| 10:94270563:T:G | C1489W | 1.000 |
| 10:94270578:A:C | Q1494H | 1.000 |
| 10:94270578:A:T | Q1494H | 1.000 |
| 10:94273669:A:C | K1538N | 1.000 |
| 10:94273669:A:T | K1538N | 1.000 |
| 10:94273675:G:C | K1540N | 1.000 |
| 10:94273675:G:T | K1540N | 1.000 |
| 10:94284924:T:C | L1665P | 1.000 |
| 10:94321974:T:A | V2139D | 1.000 |
| 10:94321989:T:A | V2144D | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000002164 (10:94106063 C>T), RS1000010861 (10:94039029 C>T), RS1000027776 (10:94132506 G>A), RS1000031117 (10:94201529 G>A,T), RS1000033642 (10:94017841 A>G), RS1000033994 (10:94049121 A>G), RS1000034751 (10:94106406 G>T), RS1000036893 (10:94242325 A>G), RS1000039960 (10:94179471 T>C,G), RS1000066778 (10:94052699 T>C), RS1000079453 (10:94032524 C>A), RS1000083032 (10:94141487 G>A), RS1000084378 (10:94223024 T>C), RS1000099142 (10:94228310 TAGGAATCAAATCCTTATCC>T), RS1000099984 (10:94078184 G>A,T)
Disease associations
OMIM: gene MIM:608414 | disease phenotypes: MIM:610725, MIM:173900, MIM:256300
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| nephrotic syndrome, type 3 | Definitive | Autosomal recessive |
| familial idiopathic steroid-resistant nephrotic syndrome | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| nephrotic syndrome, type 3 | Definitive | AR |
Mondo (9): nephrotic syndrome, type 3 (MONDO:0012546), proteinuria (MONDO:0003634), kidney disorder (MONDO:0005240), focal segmental glomerulosclerosis (MONDO:0100313), nephrotic syndrome (MONDO:0005377), polycystic kidney disease (MONDO:0020642), congenital nephrotic syndrome, Finnish type (MONDO:0009732), glomerulonephritis (MONDO:0002462), familial idiopathic steroid-resistant nephrotic syndrome (MONDO:0019006)
Orphanet (2): Hereditary steroid-resistant nephrotic syndrome (Orphanet:656), Congenital nephrotic syndrome, Finnish type (Orphanet:839)
HPO phenotypes
23 total (24 of 23 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000093 | Proteinuria |
| HP:0000097 | Focal segmental glomerulosclerosis |
| HP:0000100 | Nephrotic syndrome |
| HP:0000707 | Abnormality of the nervous system |
| HP:0000737 | Irritability |
| HP:0000969 | Edema |
| HP:0001945 | Fever |
| HP:0001967 | Diffuse mesangial sclerosis |
| HP:0002027 | Abdominal pain |
| HP:0002315 | Headache |
| HP:0002586 | Peritonitis |
| HP:0003073 | Hypoalbuminemia |
| HP:0003593 | Infantile onset |
| HP:0003621 | Juvenile onset |
| HP:0003676 | Progressive |
| HP:0003774 | Stage 5 chronic kidney disease |
| HP:0011463 | Childhood onset |
| HP:0011947 | Respiratory tract infection |
| HP:0012579 | Minimal change glomerulonephritis |
| HP:0012622 | Chronic kidney disease |
| HP:0031504 | Foamy urine |
| HP:0100539 | Periorbital edema |
| HP:0000099 | Glomerulonephritis |
GWAS associations
88 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000777_1 | Esophageal cancer and gastric cancer | 2.000000e-09 |
| GCST000777_3 | Esophageal cancer and gastric cancer | 4.000000e-09 |
| GCST000995_4 | Personality traits in bipolar disorder | 4.000000e-08 |
| GCST001089_7 | Esophageal cancer | 4.000000e-20 |
| GCST001099_31 | Sudden cardiac arrest | 4.000000e-07 |
| GCST001112_2 | Lifetime average cigarettes per day in chronic obstructive pulmonary disease | 4.000000e-07 |
| GCST001227_18 | Systolic blood pressure | 7.000000e-16 |
| GCST001228_14 | Diastolic blood pressure | 8.000000e-07 |
| GCST001238_2 | Hypertension | 9.000000e-09 |
| GCST001278_3 | Dengue shock syndrome | 3.000000e-10 |
| GCST002568_6 | Esophageal squamous cell carcinoma | 4.000000e-18 |
| GCST002626_7 | Vertical cup-disc ratio | 1.000000e-09 |
| GCST002726_2 | Glucose homeostasis traits | 5.000000e-06 |
| GCST002726_29 | Glucose homeostasis traits | 3.000000e-06 |
| GCST003720_19 | Migraine | 6.000000e-09 |
| GCST003720_30 | Migraine | 2.000000e-14 |
| GCST003986_11 | Migraine | 1.000000e-09 |
| GCST004567_27 | Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction) | 1.000000e-08 |
| GCST004567_89 | Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction) | 1.000000e-08 |
| GCST004576_141 | Waist-to-hip ratio adjusted for body mass index | 5.000000e-06 |
| GCST004576_142 | Waist-to-hip ratio adjusted for body mass index | 2.000000e-08 |
| GCST004576_143 | Waist-to-hip ratio adjusted for body mass index | 3.000000e-09 |
| GCST004607_120 | Plateletcrit | 9.000000e-12 |
| GCST004775_29 | Pulse pressure | 6.000000e-08 |
| GCST004776_54 | Systolic blood pressure | 1.000000e-07 |
| GCST005194_71 | Coronary artery disease | 2.000000e-06 |
| GCST006065_38 | Glaucoma (primary open-angle) | 2.000000e-08 |
| GCST006258_15 | Diastolic blood pressure | 6.000000e-10 |
| GCST006259_62 | Systolic blood pressure | 7.000000e-17 |
| GCST007094_130 | Diastolic blood pressure | 1.000000e-07 |
EFO canonical traits (23, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004365 | personality trait |
| EFO:0004278 | sudden cardiac arrest |
| EFO:0006335 | systolic blood pressure |
| EFO:0006336 | diastolic blood pressure |
| EFO:0004471 | insulin sensitivity measurement |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0008002 | physical activity measurement |
| EFO:0007985 | platelet crit |
| EFO:0005763 | pulse pressure measurement |
| EFO:0004341 | body fat distribution |
| EFO:0600040 | plasma clozapine-to-N-desmethylclozapine ratio measurement |
| EFO:0009930 | Calcium channel blocker use measurement |
| EFO:0009931 | Agents acting on the renin-angiotensin system use measurement |
| EFO:0004344 | birth weight |
| EFO:0005939 | parental genotype effect measurement |
| EFO:0007859 | response to interferon |
| EFO:0006939 | cup-to-disc ratio measurement |
| EFO:0004327 | electrocardiography |
| EFO:0004980 | appendicular lean mass |
| EFO:0004587 | lymphocyte count |
| EFO:0005091 | monocyte count |
| EFO:0008039 | BMI-adjusted hip circumference |
| EFO:0007797 | language measurement |
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D005921 | Glomerulonephritis | C12.050.351.968.419.570.363; C12.200.777.419.570.363; C12.950.419.570.363 |
| D005923 | Glomerulosclerosis, Focal Segmental | C12.050.351.968.419.570.363.640; C12.200.777.419.570.363.660; C12.950.419.570.363.640 |
| D007674 | Kidney Diseases | C12.050.351.968.419; C12.200.777.419; C12.950.419 |
| D009404 | Nephrotic Syndrome | C12.050.351.968.419.630.643; C12.200.777.419.630.643; C12.950.419.630.643 |
| D007690 | Polycystic Kidney Diseases | C12.050.351.968.419.403.875; C12.200.777.419.403.875; C12.950.419.403.875; C16.131.077.717; C16.320.184.625 |
| D011507 | Proteinuria | C12.050.351.968.934.734; C12.200.777.934.734; C12.950.934.734; C23.888.942.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs932764 | Efficacy | 3 | hydrochlorothiazide | Hypertension |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs932764 | PLCE1 | 3 | 3.00 | 1 | hydrochlorothiazide |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Phosphoinositide-specific phospholipase C
CTD chemical–gene interactions
53 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression | 7 |
| sodium arsenite | affects methylation, decreases expression, decreases methylation, affects cotreatment, increases abundance (+1 more) | 4 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| manganese chloride | decreases expression, increases abundance, increases expression, affects cotreatment | 2 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| chromium hexavalent ion | decreases expression, increases abundance | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Arsenic | affects methylation, affects cotreatment, decreases expression, increases abundance | 2 |
| Benzo(a)pyrene | decreases expression, increases methylation, affects methylation | 2 |
| Manganese | increases expression, affects cotreatment, decreases expression, increases abundance | 2 |
| Nickel | decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases methylation | 1 |
| quercitrin | affects expression | 1 |
| sulforaphane | decreases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| doxifluridine | increases response to substance | 1 |
| nickel sulfate | decreases expression | 1 |
| 1-UFT protocol | increases response to substance | 1 |
| epigallocatechin gallate | increases expression, affects cotreatment, decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| belinostat | decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
Cellosaurus cell lines
3 cell lines: 3 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_TE33 | HAP1 PLCE1 (-) 1 | Cancer cell line | Male |
| CVCL_TE34 | HAP1 PLCE1 (-) 2 | Cancer cell line | Male |
| CVCL_TE35 | HAP1 PLCE1 (-) 3 | Cancer cell line | Male |
Clinical trials (associated diseases)
296 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00067990 | PHASE4 | COMPLETED | Angiotensin II Blockade for Chronic Allograft Nephropathy |
| NCT00234871 | PHASE4 | COMPLETED | Tarka® vs. Lotrel® in Hypertensive, Diabetic Subjects With Renal Disease (TANDEM) |
| NCT00241085 | PHASE4 | COMPLETED | Effect of Valsartan on Proteinuria in Patients With Hypertension and Diabetes Mellitus |
| NCT00369538 | PHASE4 | SUSPENDED | Specific Blockage of Angiotensine 2 and Podocyturia in Glomerular Nephropathies With Hypertension and Proteinuria |
| NCT00508898 | PHASE4 | WITHDRAWN | The Efficacy and Safety of Calcitriol for the Treatment of Lupus Nephritis and Persistent Proteinuria |
| NCT00550095 | PHASE4 | COMPLETED | To Assess the Effects of Valsartan on Albuminuria/Proteinuria in Hypertensive Patients With Type 2 Diabetes Mellitus |
| NCT00674596 | PHASE4 | COMPLETED | The Effect of Renin Angiotensin System Blockage (RAS) Blockade On PTX3 Levels In Diabetic Patients With Proteinuria |
| NCT00858299 | PHASE4 | UNKNOWN | The Change of Urinary Angiotensinogen Excretion After Valsartan Treatment in Patients With Persistent Proteinuria |
| NCT00893425 | PHASE4 | COMPLETED | Effect of Renin Angiotensin System Blockade on the Fas Antigen (CD95) and Asymmetric Dimethylarginine (ADMA) Levels in Type-2 Diabetic Patients With Proteinuria |
| NCT00921570 | PHASE4 | COMPLETED | The Effects of Renin Angiotensin System Blockage (RAS), Calcium Channel Blocker and Combined Drugs on TWEAK, PTX3 and FMD Levels in Diabetic Proteinuric Patients With Hypertension |
| NCT00961207 | PHASE4 | TERMINATED | Triple Blockade of the Renin Angiotensin Aldosterone System in Diabetic (Type 1&2) Proteinuric Patients |
| NCT01169857 | PHASE4 | WITHDRAWN | Velcade for Proliferative Lupus Nephritis |
| NCT01219413 | PHASE4 | COMPLETED | Influence of Aliskiren on Proteinuria |
| NCT01386554 | PHASE4 | COMPLETED | Acthar for Treatment of Proteinuria in Membranous Nephropathy Patients |
| NCT01512862 | PHASE4 | UNKNOWN | Anti-proteinuric Effect of Calcitriol in Non-diabetic Kidney Disease Patients |
| NCT01541267 | PHASE4 | COMPLETED | The Effect of Various Types of the Renin-angiotensin-aldosterone System Blockade on Proteinuria |
| NCT01637259 | PHASE4 | COMPLETED | MARCH Renal Substudy |
| NCT01703234 | PHASE4 | COMPLETED | FGF-23 and Endothelial Dysfunction in Diabetic Proteinuric Patients |
| NCT01820832 | PHASE4 | UNKNOWN | Oral Calcitriol for Reduction of Mild Proteinuria in Patients With CKD |
| NCT01827202 | PHASE4 | COMPLETED | RAS Quantification in Patients With Aliskiren or Candesartan |
| NCT02057523 | PHASE4 | TERMINATED | Acthar as Rescue Therapy for Transplant Glomerulopathy in Kidney Transplant Recipients |
| NCT02063100 | PHASE4 | UNKNOWN | Efficacy and Safety of Shenyankangfu Tablets for Primary Glomerulonephritis |
| NCT02382523 | PHASE4 | WITHDRAWN | Acthar on Proteinuria in IgA Nephropathy Patients |
| NCT02522650 | PHASE4 | UNKNOWN | A Crossover Pilot Study of the Effect of Amiloride on Proteinuria |
| NCT03195023 | PHASE4 | UNKNOWN | Effect of RAS Blockers on CKD Progression in Elderly Patients With Non Proteinuric Nephropathies (PROERCAN01) |
| NCT03550859 | PHASE4 | UNKNOWN | HMG-CoA Reductase add-on in Chronic Kidney Disease Patients With Proteinuria |
| NCT03983551 | PHASE4 | COMPLETED | Comparing the Renal Effect of Dipeptidyl-peptidase 4 Inhibitors and Sulfonylureas |
| NCT04531397 | PHASE4 | WITHDRAWN | Efficacy and Safety of Dapagliflozin in Children With Proteinuric Chronic Kidney Disease |
| NCT04534270 | PHASE4 | COMPLETED | Efficacy and Safety of Dapagliflozin in Children With Proteinuria |
| NCT06374043 | PHASE4 | COMPLETED | Decentralized N=1 Study: A Feasible Approach to Evaluate Individual Therapy Response to Dapagliflozin. |
| NCT07030894 | PHASE4 | RECRUITING | Nefecon and Ambrisentan in IgA Nephropathy |
| NCT07219121 | PHASE4 | RECRUITING | Sparsentan in Posttransplant Immunoglobulin A Nephropathy or Focal Segmental Glomerulosclerosis |
| NCT07358520 | PHASE4 | NOT_YET_RECRUITING | Clinical Study on the Use of Huaier Granules for the Treatment of Proteinuria Related to Bevacizumab and Anlotinib in Lung Cancer Patients |
| NCT00117078 | PHASE4 | COMPLETED | Aranesp® Monthly Preference Study - 2 |
| NCT00117130 | PHASE4 | COMPLETED | Study to Evaluate Effectiveness of Aranesp® |
| NCT00132431 | PHASE4 | COMPLETED | START: Sensipar Treatment Algorithm to Reach K/DOQI Targets in Chronic Kidney Disease Subjects With Secondary Hyperparathyroidism |
| NCT00140985 | PHASE4 | COMPLETED | Antiproteinuric Efficacy of Losartan Potassium in Patients With Non-Diabetic Proteinuric Renal Diseases (0954-213) |
| NCT00246129 | PHASE4 | COMPLETED | CamTac Trial:Campath-Tacrolimus vs IL2R MoAb/Tacrolimus/MMF in Renal Transplantation |
| NCT00275535 | PHASE4 | COMPLETED | The Comparison of Tacrolimus and Sirolimus Immunosuppression Based Drug Regimens in Kidney Transplant Recipients |
| NCT00282217 | PHASE4 | COMPLETED | Study Evaluating Sirolimus in the Treatment of Kidney Transplant |
Related Atlas pages
- Associated diseases: nephrotic syndrome, type 3, familial idiopathic steroid-resistant nephrotic syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): carcinoma of esophagus, cataract, congenital nephrotic syndrome, Finnish type, Dengue hemorrhagic fever, esophageal squamous cell carcinoma, familial idiopathic steroid-resistant nephrotic syndrome, focal segmental glomerulosclerosis, gastric carcinoma, glaucoma, glomerulonephritis, hypertensive disorder, kidney disorder, migraine disorder, nephrotic syndrome, nephrotic syndrome, type 3, open-angle glaucoma, polycystic kidney disease, proteinuria