PLEK
gene geneOn this page
Also known as P47PLEK1
Summary
PLEK (pleckstrin, HGNC:9070) is a protein-coding gene on chromosome 2p14, encoding Pleckstrin (P08567). Major protein kinase C substrate of platelets.
Enables phosphatidylinositol-3,4-bisphosphate binding activity; protein homodimerization activity; and protein kinase C binding activity. Involved in several processes, including G protein-coupled receptor signaling pathway; regulation of actin filament organization; and regulation of phosphate metabolic process. Located in cytoplasm and ruffle membrane.
Source: NCBI Gene 5341 — RefSeq curated summary.
At a glance
- Gene–disease (curated): autosomal dominant nonsyndromic hearing loss 58 (Limited, GenCC)
- GWAS associations: 20
- Clinical variants (ClinVar): 50 total
- Druggable target: yes
- MANE Select transcript:
NM_002664
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9070 |
| Approved symbol | PLEK |
| Name | pleckstrin |
| Location | 2p14 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | P47, PLEK1 |
| Ensembl gene | ENSG00000115956 |
| Ensembl biotype | protein_coding |
| OMIM | 173570 |
| Entrez | 5341 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 1 protein_coding, 1 retained_intron
ENST00000234313, ENST00000474788
RefSeq mRNA: 1 — MANE Select: NM_002664
NM_002664
CCDS: CCDS1887
Canonical transcript exons
ENST00000234313 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000758794 | 68380723 | 68380904 |
| ENSE00000758796 | 68382542 | 68382633 |
| ENSE00000758798 | 68386502 | 68386686 |
| ENSE00000758800 | 68388387 | 68388491 |
| ENSE00000963053 | 68380328 | 68380483 |
| ENSE00001163794 | 68395680 | 68397453 |
| ENSE00001911788 | 68365282 | 68365393 |
| ENSE00003547803 | 68394107 | 68394176 |
| ENSE00003577887 | 68393162 | 68393245 |
Expression profiles
Bgee: expression breadth ubiquitous, 234 present calls, max score 99.08.
FANTOM5 (CAGE): breadth broad, TPM avg 119.7135 / max 9473.8797, expressed in 530 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 20673 | 114.3031 | 512 |
| 20672 | 4.3541 | 335 |
| 20686 | 0.3232 | 80 |
| 20685 | 0.2758 | 73 |
| 20687 | 0.1562 | 58 |
| 20689 | 0.1224 | 51 |
| 20671 | 0.0997 | 54 |
| 20690 | 0.0789 | 38 |
Top tissues by expression
277 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| monocyte | CL:0000576 | 99.08 | gold quality |
| mononuclear cell | CL:0000842 | 99.01 | gold quality |
| leukocyte | CL:0000738 | 99.00 | gold quality |
| granulocyte | CL:0000094 | 98.83 | gold quality |
| blood | UBERON:0000178 | 98.02 | gold quality |
| bone marrow | UBERON:0002371 | 97.66 | gold quality |
| bone marrow cell | CL:0002092 | 97.16 | gold quality |
| lymph node | UBERON:0000029 | 96.34 | gold quality |
| vermiform appendix | UBERON:0001154 | 96.19 | gold quality |
| spleen | UBERON:0002106 | 95.76 | gold quality |
| periodontal ligament | UBERON:0008266 | 95.43 | gold quality |
| bone element | UBERON:0001474 | 95.31 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 94.56 | gold quality |
| caecum | UBERON:0001153 | 92.44 | gold quality |
| olfactory bulb | UBERON:0002264 | 91.98 | gold quality |
| type B pancreatic cell | CL:0000169 | 91.03 | gold quality |
| gall bladder | UBERON:0002110 | 89.83 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 89.48 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 89.25 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 88.82 | gold quality |
| upper lobe of lung | UBERON:0008948 | 87.77 | gold quality |
| rectum | UBERON:0001052 | 87.75 | gold quality |
| superficial temporal artery | UBERON:0001614 | 86.95 | gold quality |
| tonsil | UBERON:0002372 | 85.93 | gold quality |
| right lung | UBERON:0002167 | 85.66 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 85.50 | gold quality |
| omental fat pad | UBERON:0010414 | 85.23 | gold quality |
| peritoneum | UBERON:0002358 | 85.19 | gold quality |
| right coronary artery | UBERON:0001625 | 85.09 | gold quality |
| lung | UBERON:0002048 | 84.68 | gold quality |
Single-cell (SCXA)
Detected in 31 experiment(s), a significant marker in 29.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-112 | yes | 3767.08 |
| E-MTAB-10432 | yes | 2990.09 |
| E-MTAB-9067 | yes | 2672.10 |
| E-CURD-98 | yes | 2281.72 |
| E-MTAB-7407 | yes | 1880.54 |
| E-GEOD-135922 | yes | 1745.66 |
| E-CURD-6 | yes | 1564.42 |
| E-GEOD-130473 | yes | 1465.43 |
| E-MTAB-8884 | yes | 1427.00 |
| E-HCAD-6 | yes | 1327.01 |
| E-GEOD-75688 | yes | 1021.97 |
| E-ANND-5 | yes | 619.18 |
| E-HCAD-1 | yes | 84.78 |
| E-CURD-122 | yes | 47.35 |
| E-GEOD-84465 | yes | 39.41 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FLI1, GATA1, LMO2, RUNX1, SPI1
miRNA regulators (miRDB)
54 targeting PLEK, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
| HSA-MIR-200A-3P | 99.94 | 72.68 | 2420 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
| HSA-MIR-3919 | 99.87 | 69.45 | 2489 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-4756-5P | 99.84 | 64.98 | 1809 |
| HSA-MIR-1323 | 99.83 | 69.89 | 2471 |
| HSA-MIR-3180-5P | 99.82 | 69.12 | 2422 |
| HSA-MIR-205-5P | 99.81 | 70.05 | 1557 |
| HSA-MIR-548O-3P | 99.74 | 69.30 | 2228 |
| HSA-MIR-1255A | 99.74 | 68.09 | 744 |
| HSA-MIR-1255B-5P | 99.74 | 68.16 | 741 |
| HSA-MIR-4516 | 99.61 | 67.78 | 3390 |
| HSA-MIR-1260A | 99.61 | 66.67 | 1098 |
| HSA-MIR-1260B | 99.61 | 66.67 | 1098 |
| HSA-MIR-12122 | 99.56 | 69.33 | 1672 |
| HSA-MIR-6751-5P | 99.56 | 64.99 | 1145 |
| HSA-MIR-486-3P | 99.51 | 66.82 | 1901 |
| HSA-MIR-12131 | 99.48 | 68.72 | 1673 |
| HSA-MIR-3915 | 99.45 | 68.49 | 1905 |
| HSA-MIR-4460 | 99.37 | 68.52 | 615 |
| HSA-MIR-6128 | 99.33 | 67.83 | 1581 |
Literature-anchored findings (GeneRIF, showing 12)
- Translocation requires its phosphorylation and newly formed ligands (PMID:12054651)
- A pleckstrin homology domain located in G protein-coupled receptor kinase-2 (GRK2) residue 548 to 660 plays a significant role in mediating interaction between protein kinase C beta 1 and GRK2. (PMID:12456365)
- The human pleckstrin-1 solution nuclear magnetic resonance structure of the C-terminal pleckstrin homology domain was reported. (PMID:15698571)
- Proteins beta3 integrin, Vav3, Plekhm1, and Src, implicated in attachment defects, had normal exon sequences in a new type of osteopetrosis. (PMID:19546854)
- Idirect associations between plek and actin through 17 beta-hydroxysteroid dehydrogenase 4, alpha-actinin, moesin, radixin and factor XIIIA, is proposed. (PMID:19722192)
- Here they show that the PH domain from Bcr-Abl binds a number of proteins involved in vital cellular processes in leukemogenesis. (PMID:19944685)
- crystallization and preliminary X-ray diffraction analysis of the first 2 domains of pleckstrin (NPHDEP); work demonstrates that NPHDEP behaves as a monomer in solution and suggests that all 3 pleckstrin domains contribute to the dimerization interface (PMID:21393855)
- These findings reveal a novel role of the PLD1-pleckstrin homology domain as a positive regulator of endocytosis and provide a link between PLD1 and HIF-1alpha in the EGFR endocytosis pathway. (PMID:26680696)
- Only one gene, pleckstrin , was significantly overexpressed in periodontitis,cardiovascular disease, rheumatoid arthritis and ulcerative colitis , implicating this gene as an important networking link between these chronic inflammatory diseases (PMID:26686060)
- A rare genomic duplication in 2p14 underlies autosomal dominant hearing loss DFNA58. (PMID:32337552)
- Pleckstrin Levels Are Increased in Patients with Chronic Periodontitis and Regulated via the MAP Kinase-p38alpha Signaling Pathway in Gingival Fibroblasts. (PMID:35087525)
- Higher expression of PLEK and LY86 as the potential biomarker of carotid atherosclerosis. (PMID:37861500)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | plek | ENSDARG00000104325 |
| mus_musculus | Plek | ENSMUSG00000020120 |
| rattus_norvegicus | Plek | ENSRNOG00000005214 |
Paralogs (1): PLEK2 (ENSG00000100558)
Protein
Protein identifiers
Pleckstrin — P08567 (reviewed: P08567)
Alternative names: Platelet 47 kDa protein
All UniProt accessions (1): P08567
UniProt curated annotations — full annotation on UniProt →
Function. Major protein kinase C substrate of platelets.
RefSeq proteins (1): NP_002655* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000591 | DEP_dom | Domain |
| IPR001849 | PH_domain | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR036388 | WH-like_DNA-bd_sf | Homologous_superfamily |
| IPR036390 | WH_DNA-bd_sf | Homologous_superfamily |
| IPR037370 | Pleckstrin | Family |
| IPR037371 | PLEK_DEP | Domain |
Pfam: PF00169, PF00610
UniProt features (47 total): strand 24, helix 7, sequence variant 5, domain 3, turn 3, modified residue 3, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
8 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2I5F | X-RAY DIFFRACTION | 1.35 |
| 2I5C | X-RAY DIFFRACTION | 1.75 |
| 1ZM0 | X-RAY DIFFRACTION | 2.1 |
| 1PLS | SOLUTION NMR | |
| 1W4M | SOLUTION NMR | |
| 1X05 | SOLUTION NMR | |
| 1XX0 | SOLUTION NMR | |
| 2CSO | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P08567-F1 | 82.29 | 0.39 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 64, 113, 117
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-114608 | Platelet degranulation |
MSigDB gene sets: 443 (showing top):
GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_HEMATOPOIETIC_PROGENITOR_CELL_DIFFERENTIATION, WALLACE_PROSTATE_CANCER_RACE_UP, GOBP_ACTIN_FILAMENT_BUNDLE_ORGANIZATION, GOBP_REGULATION_OF_CALCIUM_MEDIATED_SIGNALING, MCLACHLAN_DENTAL_CARIES_UP, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, chr2p14, GOBP_PLATELET_ACTIVATION, MODULE_45, GOBP_INOSITOL_PHOSPHATE_METABOLIC_PROCESS, GOBP_POLYOL_METABOLIC_PROCESS, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, GOBP_NEGATIVE_REGULATION_OF_ALCOHOL_BIOSYNTHETIC_PROCESS, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS
GO Biological Process (25): hematopoietic progenitor cell differentiation (GO:0002244), platelet degranulation (GO:0002576), obsolete vesicle docking involved in exocytosis (GO:0006904), phospholipase C-activating G protein-coupled receptor signaling pathway (GO:0007200), integrin-mediated signaling pathway (GO:0007229), positive regulation of platelet activation (GO:0010572), negative regulation of inositol phosphate biosynthetic process (GO:0010920), cell projection organization (GO:0030030), actin cytoskeleton organization (GO:0030036), positive regulation of actin filament depolymerization (GO:0030836), phospholipase C-inhibiting G protein-coupled receptor signaling pathway (GO:0030845), cortical actin cytoskeleton organization (GO:0030866), ruffle organization (GO:0031529), positive regulation of actin filament bundle assembly (GO:0032233), positive regulation of integrin activation (GO:0033625), intracellular signal transduction (GO:0035556), inositol phosphate metabolic process (GO:0043647), negative regulation of G protein-coupled receptor signaling pathway (GO:0045744), negative regulation of calcium-mediated signaling (GO:0050849), regulation of cell diameter (GO:0060305), thrombin-activated receptor signaling pathway (GO:0070493), negative regulation of thrombin-activated receptor signaling pathway (GO:0070495), platelet aggregation (GO:0070527), protein secretion by platelet (GO:0070560), positive regulation of cellular component biogenesis (GO:0044089)
GO Molecular Function (5): protein kinase C binding (GO:0005080), phosphatase activator activity (GO:0019211), protein homodimerization activity (GO:0042803), phosphatidylinositol-3,4-bisphosphate binding (GO:0043325), protein binding (GO:0005515)
GO Cellular Component (6): extracellular region (GO:0005576), cytoplasm (GO:0005737), cytosol (GO:0005829), plasma membrane (GO:0005886), membrane (GO:0016020), ruffle membrane (GO:0032587)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Response to elevated platelet cytosolic Ca2+ | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| G protein-coupled receptor signaling pathway | 3 |
| positive regulation of cytoskeleton organization | 2 |
| positive regulation of supramolecular fiber organization | 2 |
| intracellular anatomical structure | 2 |
| hemopoiesis | 1 |
| cell differentiation | 1 |
| regulated exocytosis | 1 |
| establishment of localization in cell | 1 |
| phospholipase C activator activity | 1 |
| cell surface receptor signaling pathway | 1 |
| regulation of platelet activation | 1 |
| platelet activation | 1 |
| positive regulation of cell activation | 1 |
| negative regulation of phosphorus metabolic process | 1 |
| regulation of inositol phosphate biosynthetic process | 1 |
| inositol phosphate biosynthetic process | 1 |
| negative regulation of carbohydrate metabolic process | 1 |
| negative regulation of alcohol biosynthetic process | 1 |
| cellular component organization | 1 |
| cytoskeleton organization | 1 |
| actin filament-based process | 1 |
| actin filament depolymerization | 1 |
| regulation of actin filament depolymerization | 1 |
| positive regulation of protein depolymerization | 1 |
| phospholipase C inhibitor activity | 1 |
| actin cytoskeleton organization | 1 |
| cortical cytoskeleton organization | 1 |
| plasma membrane bounded cell projection organization | 1 |
| regulation of actin filament bundle assembly | 1 |
| positive regulation of cellular component biogenesis | 1 |
| actin filament bundle assembly | 1 |
| positive regulation of protein-containing complex assembly | 1 |
| integrin activation | 1 |
| regulation of integrin activation | 1 |
| signal transduction | 1 |
| organophosphate metabolic process | 1 |
| polyol metabolic process | 1 |
| regulation of G protein-coupled receptor signaling pathway | 1 |
| negative regulation of signal transduction | 1 |
Protein interactions and networks
STRING
4092 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PLEK | MCF2 | P10911 | 977 |
| PLEK | OSBP | P22059 | 908 |
| PLEK | CYTH1 | Q15438 | 905 |
| PLEK | PLCD1 | P51178 | 893 |
| PLEK | SRC | P12931 | 877 |
| PLEK | AKT1 | P31749 | 867 |
| PLEK | BTK | Q06187 | 867 |
| PLEK | RABIF | P47224 | 861 |
| PLEK | CDC42 | P21181 | 844 |
| PLEK | RHOA | P06749 | 835 |
| PLEK | CYTH3 | O43739 | 814 |
| PLEK | ANK1 | P16157 | 800 |
| PLEK | ANK3 | Q12955 | 799 |
| PLEK | ANK2 | Q01484 | 797 |
| PLEK | RASA1 | P20936 | 791 |
IntAct
17 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PLEK | INPP5A | psi-mi:“MI:0407”(direct interaction) | 0.630 |
| PLEK | INPP5A | psi-mi:“MI:0914”(association) | 0.630 |
| INPP5A | PLEK | psi-mi:“MI:0914”(association) | 0.630 |
| PLEK | WDR75 | psi-mi:“MI:0915”(physical association) | 0.590 |
| CAVIN2 | PLEK | psi-mi:“MI:0915”(physical association) | 0.560 |
| PLEK | CAVIN2 | psi-mi:“MI:0914”(association) | 0.560 |
| PLEK | PF4 | psi-mi:“MI:0914”(association) | 0.460 |
| PLEK | psi-mi:“MI:0915”(physical association) | 0.400 | |
| PLEK | ARHGEF1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PLEK | F13A1 | psi-mi:“MI:0914”(association) | 0.350 |
| ENO1 | psi-mi:“MI:0914”(association) | 0.350 | |
| SARAF | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (10): PLEK (Reconstituted Complex), WDR75 (Affinity Capture-MS), PLEK (Affinity Capture-MS), PLEK (Affinity Capture-MS), PLEK (Proximity Label-MS), WDR75 (Affinity Capture-MS), PLEK (Affinity Capture-MS), ARHGEF1 (Affinity Capture-MS), PLEK (Cross-Linking-MS (XL-MS)), PLEK (Proximity Label-MS)
ESM2 similar proteins: O00170, O08915, O75689, O97627, O97628, P08487, P08567, P10686, P16885, P19174, P21146, P24135, P25098, P26817, P26818, P26819, P34512, P35626, P41229, P49619, P49620, P70392, Q09639, Q22070, Q24145, Q38JA7, Q3UYH7, Q4KM33, Q4PMC9, Q5F3R2, Q5FWY5, Q62077, Q64682, Q6IQX0, Q6Q308, Q7YRC1, Q8CIG3, Q8CIH5, Q8NB78, Q8R2V5
Diamond homologs: A0A0G2JUG7, A2A5R2, A5PKW4, A6H7I5, B6RSP1, D3ZL52, D4A631, E1JIT7, F1MUS9, F4IXW2, F4JN05, F4JSZ5, F4K2K3, G3X9K3, G5EET6, G5EGS5, O08967, O13817, O43739, O46382, P08567, P11075, P31749, P31751, P34512, P39052, P39054, P39993, P47102, P47196, P50570, P54644, P60669, P63034, P63035, P97694, P97696, Q00IB7, Q01314, Q10491
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRKCA | up-regulates | PLEK | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
50 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 40 |
| Likely benign | 0 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1455 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:68365390:GAAG:G | donor_gain | 1.0000 |
| 2:68365394:GTGA:G | donor_loss | 1.0000 |
| 2:68365395:T:A | donor_loss | 1.0000 |
| 2:68380322:TTACA:T | acceptor_loss | 1.0000 |
| 2:68380323:TACA:T | acceptor_loss | 1.0000 |
| 2:68380326:A:AG | acceptor_gain | 1.0000 |
| 2:68380326:AG:A | acceptor_gain | 1.0000 |
| 2:68380326:AGG:A | acceptor_gain | 1.0000 |
| 2:68380327:G:GG | acceptor_gain | 1.0000 |
| 2:68380327:G:GT | acceptor_loss | 1.0000 |
| 2:68380327:GG:G | acceptor_gain | 1.0000 |
| 2:68380327:GGG:G | acceptor_gain | 1.0000 |
| 2:68380327:GGGGA:G | acceptor_gain | 1.0000 |
| 2:68380479:GGATG:G | donor_gain | 1.0000 |
| 2:68380480:GATG:G | donor_gain | 1.0000 |
| 2:68380480:GATGG:G | donor_gain | 1.0000 |
| 2:68380481:ATGG:A | donor_loss | 1.0000 |
| 2:68380484:G:A | donor_loss | 1.0000 |
| 2:68380721:A:AG | acceptor_gain | 1.0000 |
| 2:68380721:AGTTT:A | acceptor_gain | 1.0000 |
| 2:68380722:G:GC | acceptor_gain | 1.0000 |
| 2:68380722:GT:G | acceptor_gain | 1.0000 |
| 2:68380722:GTT:G | acceptor_gain | 1.0000 |
| 2:68380722:GTTT:G | acceptor_gain | 1.0000 |
| 2:68380722:GTTTG:G | acceptor_gain | 1.0000 |
| 2:68380857:G:GT | donor_gain | 1.0000 |
| 2:68380858:A:T | donor_gain | 1.0000 |
| 2:68380869:G:GT | donor_gain | 1.0000 |
| 2:68382531:T:G | acceptor_gain | 1.0000 |
| 2:68386682:ACTTT:A | donor_gain | 1.0000 |
AlphaMissense
2338 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:68388488:G:C | K253N | 1.000 |
| 2:68388488:G:T | K253N | 1.000 |
| 2:68380346:T:A | W21R | 0.999 |
| 2:68380346:T:C | W21R | 0.999 |
| 2:68380798:T:A | W92R | 0.999 |
| 2:68380798:T:C | W92R | 0.999 |
| 2:68388486:A:G | K253E | 0.999 |
| 2:68393190:G:C | R264T | 0.999 |
| 2:68393191:G:C | R264S | 0.999 |
| 2:68393191:G:T | R264S | 0.999 |
| 2:68395775:T:A | W338R | 0.999 |
| 2:68395775:T:C | W338R | 0.999 |
| 2:68393180:T:A | W261R | 0.998 |
| 2:68393180:T:C | W261R | 0.998 |
| 2:68393190:G:T | R264M | 0.998 |
| 2:68393223:T:C | L275P | 0.998 |
| 2:68395777:G:C | W338C | 0.998 |
| 2:68395777:G:T | W338C | 0.998 |
| 2:68386502:G:A | G158D | 0.997 |
| 2:68386580:T:C | L184P | 0.997 |
| 2:68393182:G:C | W261C | 0.997 |
| 2:68393182:G:T | W261C | 0.997 |
| 2:68393189:A:G | R264G | 0.997 |
| 2:68393228:T:G | Y277D | 0.997 |
| 2:68365383:T:C | L11P | 0.996 |
| 2:68386523:T:C | L165P | 0.996 |
| 2:68386678:T:G | Y217D | 0.996 |
| 2:68388481:T:C | L251S | 0.996 |
| 2:68388487:A:C | K253T | 0.996 |
| 2:68393163:G:A | G255E | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000097883 (2:68393568 G>A), RS1000111924 (2:68373226 A>C,G), RS1000201784 (2:68367252 T>C), RS1000257480 (2:68379034 T>C), RS1000355893 (2:68395213 T>C), RS1000399596 (2:68390874 A>G), RS1000415580 (2:68384491 G>A,T), RS1000527370 (2:68396735 T>C), RS1000533110 (2:68373416 G>A,T), RS1000557788 (2:68373289 G>A), RS1000677038 (2:68378854 G>C,T), RS1000742443 (2:68396719 A>G,T), RS1000846564 (2:68390640 G>A), RS1001089655 (2:68396480 T>A), RS1001130070 (2:68374668 A>G)
Disease associations
OMIM: gene MIM:173570 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal dominant nonsyndromic hearing loss 58 | Limited | Autosomal dominant |
Mondo (1): autosomal dominant nonsyndromic hearing loss 58 (MONDO:0014293)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
20 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000274_1 | Metabolite levels | 2.000000e-09 |
| GCST000612_20 | Celiac disease | 8.000000e-09 |
| GCST001198_69 | Multiple sclerosis | 5.000000e-11 |
| GCST001341_19 | Multiple sclerosis | 2.000000e-07 |
| GCST002324_1 | Anger | 4.000000e-06 |
| GCST004607_216 | Plateletcrit | 2.000000e-14 |
| GCST004627_77 | Lymphocyte count | 3.000000e-13 |
| GCST005531_106 | Multiple sclerosis | 1.000000e-13 |
| GCST009030_1 | Venous thromboembolism | 3.000000e-10 |
| GCST009597_9 | Multiple sclerosis | 5.000000e-16 |
| GCST90002379_23 | Basophil count | 4.000000e-09 |
| GCST90002388_72 | Lymphocyte count | 6.000000e-28 |
| GCST90002392_205 | Mean corpuscular volume | 2.000000e-12 |
| GCST90002393_191 | Monocyte count | 1.000000e-14 |
| GCST90002395_327 | Mean platelet volume | 2.000000e-21 |
| GCST90002397_806 | Mean spheric corpuscular volume | 8.000000e-13 |
| GCST90002399_145 | Neutrophil percentage of white cells | 7.000000e-11 |
| GCST90002400_567 | Plateletcrit | 1.000000e-27 |
| GCST90002401_377 | Platelet distribution width | 2.000000e-21 |
| GCST90002407_51 | White blood cell count | 2.000000e-12 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0003015 | aggressive behavior |
| EFO:0007985 | platelet crit |
| EFO:0004587 | lymphocyte count |
| EFO:0005090 | basophil count |
| EFO:0005091 | monocyte count |
| EFO:0007990 | neutrophil percentage of leukocytes |
| EFO:0007984 | platelet component distribution width |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4523171 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
35 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Tretinoin | increases expression | 3 |
| tamibarotene | increases expression | 2 |
| Resveratrol | affects cotreatment, increases expression, decreases reaction, increases phosphorylation | 2 |
| Benzo(a)pyrene | decreases expression, increases expression | 2 |
| Smoke | increases expression, decreases expression, increases abundance | 2 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases expression | 1 |
| nickel sulfate | increases expression | 1 |
| dioleoylphosphatidic acid | increases phosphorylation, increases reaction | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| phosphatidylethanol | increases phosphorylation, increases reaction | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| licochalcone B | increases expression | 1 |
| Pioglitazone | decreases expression | 1 |
| Zoledronic Acid | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Cisplatin | increases expression | 1 |
| Coal | increases abundance, increases expression | 1 |
| Dactinomycin | affects cotreatment, increases expression | 1 |
| Diuron | decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Lipopolysaccharides | increases expression, affects response to substance | 1 |
| Nickel | increases expression | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Quercetin | decreases reaction, increases phosphorylation | 1 |
| Tetradecanoylphorbol Acetate | decreases reaction, increases phosphorylation | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4419286 | Binding | Binding affinity to PLEK PH-domain (unknown origin) at 0.01 to 50 uM by SPR spectroscopy | Methods and compositions for inhibiting cnksr1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: autosomal dominant nonsyndromic hearing loss 58
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal dominant nonsyndromic hearing loss 58