PLEKHG3
geneOn this page
Also known as ARHGEF43
Summary
PLEKHG3 (pleckstrin homology and RhoGEF domain containing G3, HGNC:20364) is a protein-coding gene on chromosome 14q23.3, encoding Pleckstrin homology domain-containing family G member 3 (A1L390). Plays a role in controlling cell polarity and cell motility by selectively binding newly polymerized actin and activating RAC1 and CDC42 to enhance local actin polymerization.
Enables actin binding activity. Involved in regulation of cell migration and regulation of establishment of cell polarity. Predicted to be located in cytosol.
Source: NCBI Gene 26030 — RefSeq curated summary.
At a glance
- GWAS associations: 6
- Clinical variants (ClinVar): 314 total — 1 pathogenic
- Druggable target: yes
- MANE Select transcript:
NM_001308147
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:20364 |
| Approved symbol | PLEKHG3 |
| Name | pleckstrin homology and RhoGEF domain containing G3 |
| Location | 14q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ARHGEF43 |
| Ensembl gene | ENSG00000126822 |
| Ensembl biotype | protein_coding |
| OMIM | 617940 |
| Entrez | 26030 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 13 protein_coding, 2 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000247226, ENST00000394691, ENST00000471182, ENST00000484731, ENST00000490180, ENST00000492928, ENST00000554499, ENST00000555982, ENST00000556801, ENST00000634379, ENST00000864150, ENST00000864151, ENST00000864152, ENST00000864153, ENST00000967516, ENST00000967517
RefSeq mRNA: 1 — MANE Select: NM_001308147
NM_001308147
CCDS: CCDS76690
Canonical transcript exons
ENST00000247226 — 17 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001519234 | 64730243 | 64730312 |
| ENSE00001519239 | 64704424 | 64704704 |
| ENSE00001631122 | 64737356 | 64737375 |
| ENSE00001741894 | 64731361 | 64731543 |
| ENSE00001744014 | 64731714 | 64731806 |
| ENSE00001801653 | 64736853 | 64736891 |
| ENSE00001955111 | 64742982 | 64750249 |
| ENSE00002429829 | 64727593 | 64727982 |
| ENSE00003464790 | 64741036 | 64742455 |
| ENSE00003479499 | 64732095 | 64732181 |
| ENSE00003568864 | 64730799 | 64730949 |
| ENSE00003590952 | 64732803 | 64732901 |
| ENSE00003632044 | 64738742 | 64738855 |
| ENSE00003632097 | 64732427 | 64732460 |
| ENSE00003668892 | 64731038 | 64731169 |
| ENSE00003685960 | 64728996 | 64729093 |
| ENSE00003784208 | 64730642 | 64730688 |
Expression profiles
Bgee: expression breadth ubiquitous, 247 present calls, max score 96.22.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 20.4821 / max 338.7218, expressed in 1540 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 140129 | 18.2835 | 1519 |
| 140130 | 1.1018 | 532 |
| 140126 | 0.2508 | 81 |
| 140131 | 0.2436 | 90 |
| 140125 | 0.1971 | 74 |
| 140127 | 0.1853 | 65 |
| 140124 | 0.1126 | 53 |
| 140132 | 0.0625 | 34 |
| 140128 | 0.0449 | 20 |
Top tissues by expression
285 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| sural nerve | UBERON:0015488 | 96.22 | gold quality |
| popliteal artery | UBERON:0002250 | 96.15 | gold quality |
| tibial artery | UBERON:0007610 | 96.14 | gold quality |
| right coronary artery | UBERON:0001625 | 94.94 | gold quality |
| corpus callosum | UBERON:0002336 | 94.81 | gold quality |
| granulocyte | CL:0000094 | 94.71 | gold quality |
| body of uterus | UBERON:0009853 | 93.72 | gold quality |
| aorta | UBERON:0000947 | 93.35 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 92.41 | gold quality |
| left uterine tube | UBERON:0001303 | 92.30 | gold quality |
| left coronary artery | UBERON:0001626 | 92.28 | gold quality |
| metanephros cortex | UBERON:0010533 | 92.22 | gold quality |
| coronary artery | UBERON:0001621 | 92.09 | gold quality |
| spinal cord | UBERON:0002240 | 91.29 | gold quality |
| nerve | UBERON:0001021 | 91.11 | gold quality |
| tibial nerve | UBERON:0001323 | 91.11 | gold quality |
| blood | UBERON:0000178 | 90.88 | gold quality |
| ectocervix | UBERON:0012249 | 90.67 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 90.67 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 90.63 | gold quality |
| olfactory bulb | UBERON:0002264 | 90.61 | silver quality |
| skin of leg | UBERON:0001511 | 90.52 | gold quality |
| esophagus mucosa | UBERON:0002469 | 90.44 | gold quality |
| right ovary | UBERON:0002118 | 90.06 | gold quality |
| skin of abdomen | UBERON:0001416 | 90.02 | gold quality |
| ascending aorta | UBERON:0001496 | 89.88 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 89.88 | gold quality |
| thoracic aorta | UBERON:0001515 | 89.84 | gold quality |
| mucosa of stomach | UBERON:0001199 | 89.71 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 89.26 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 2)
- This is the first implication of chr14q23.2-23.3 in the etiology of autism and points to MTHFD1, PLEKHG3, and CHURC1 as potential candidate genes contributing to autism risk. (PMID:21360829)
- PLEKHG3 enhances polarized cell migration by activating actin filaments at the cell front. (PMID:27555588)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | si:ch73-212j7.3 | ENSDARG00000058835 |
| danio_rerio | si:ch73-212j7.3 | ENSDARG00000096613 |
| mus_musculus | Plekhg3 | ENSMUSG00000052609 |
| rattus_norvegicus | Plekhg3 | ENSRNOG00000006570 |
Protein
Protein identifiers
Pleckstrin homology domain-containing family G member 3 — A1L390 (reviewed: A1L390)
All UniProt accessions (7): A1L390, A0A0U1RR71, A0A2X0SFH4, A0A8C8NWT4, G3V278, G3V311, G3V3I3
UniProt curated annotations — full annotation on UniProt →
Function. Plays a role in controlling cell polarity and cell motility by selectively binding newly polymerized actin and activating RAC1 and CDC42 to enhance local actin polymerization.
Subcellular location. Cytoplasm. Cytoskeleton.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| A1L390-1 | 1 | yes |
| A1L390-2 | 2 | |
| A1L390-3 | 3 |
RefSeq proteins (1): NP_001295076* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000219 | DH_dom | Domain |
| IPR001849 | PH_domain | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR035899 | DBL_dom_sf | Homologous_superfamily |
| IPR043324 | PH_PLEKHG1_G2_G3 | Domain |
| IPR055251 | SOS1_NGEF_PH | Domain |
Pfam: PF00621, PF22697
UniProt features (50 total): modified residue 19, compositionally biased region 11, region of interest 8, sequence conflict 4, splice variant 3, domain 2, sequence variant 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-A1L390-F1 | 55.28 | 0.15 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (19): 76, 433, 576, 577, 618, 631, 640, 643, 647, 741, 779, 827, 962, 1011, 1023, 1037, 1040, 1081, 1107
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-8980692 | RHOA GTPase cycle |
| R-HSA-9013148 | CDC42 GTPase cycle |
| R-HSA-9013149 | RAC1 GTPase cycle |
| R-HSA-9013406 | RHOQ GTPase cycle |
| R-HSA-9013408 | RHOG GTPase cycle |
MSigDB gene sets: 153 (showing top):
GOBP_ESTABLISHMENT_OR_MAINTENANCE_OF_CELL_POLARITY, GOBP_REGULATION_OF_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION, GOMF_GTPASE_BINDING, GOBP_ESTABLISHMENT_OF_CELL_POLARITY, CATTTCA_MIR203, ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_DN, chr14q23, GOMF_ACTIN_BINDING, GOBP_REGULATION_OF_ESTABLISHMENT_OR_MAINTENANCE_OF_CELL_POLARITY, MULLIGHAN_NPM1_SIGNATURE_3_DN, MORF_PDPK1, GOBP_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION, LEIN_OLIGODENDROCYTE_MARKERS, GOMF_GUANYL_NUCLEOTIDE_EXCHANGE_FACTOR_ACTIVITY, BOCHKIS_FOXA2_TARGETS
GO Biological Process (3): regulation of cell migration (GO:0030334), regulation of small GTPase mediated signal transduction (GO:0051056), regulation of establishment of cell polarity (GO:2000114)
GO Molecular Function (3): actin binding (GO:0003779), guanyl-nucleotide exchange factor activity (GO:0005085), small GTPase binding (GO:0031267)
GO Cellular Component (3): cytosol (GO:0005829), cytoskeleton (GO:0005856), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase cycle | 5 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| cell migration | 1 |
| regulation of cell motility | 1 |
| small GTPase-mediated signal transduction | 1 |
| regulation of intracellular signal transduction | 1 |
| establishment of cell polarity | 1 |
| regulation of establishment or maintenance of cell polarity | 1 |
| cytoskeletal protein binding | 1 |
| GTP binding | 1 |
| GDP binding | 1 |
| GTPase regulator activity | 1 |
| GTPase binding | 1 |
| cytoplasm | 1 |
| intracellular membraneless organelle | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
626 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PLEKHG3 | GRIFIN | A4D1Z8 | 512 |
| PLEKHG3 | PPP1R36 | Q96LQ0 | 439 |
| PLEKHG3 | PLEKHG7 | Q6ZR37 | 393 |
| PLEKHG3 | SGSM1 | Q2NKQ1 | 385 |
| PLEKHG3 | ARHGEF33 | A8MVX0 | 370 |
| PLEKHG3 | CHURC1 | Q8WUH1 | 369 |
| PLEKHG3 | SERPINE3 | A8MV23 | 367 |
| PLEKHG3 | TET1 | Q8NFU7 | 353 |
| PLEKHG3 | NOS1AP | O75052 | 352 |
| PLEKHG3 | PRMT2IP | Q6ZRI6 | 348 |
| PLEKHG3 | PPIL1 | Q9Y3C6 | 348 |
| PLEKHG3 | DNMT3A | Q9Y6K1 | 348 |
| PLEKHG3 | ARL11 | Q969Q4 | 331 |
| PLEKHG3 | SYDE1 | Q6ZW31 | 328 |
| PLEKHG3 | RGPD1 | P0C839 | 324 |
IntAct
103 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| YWHAG | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.640 |
| YWHAH | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.610 |
| YWHAB | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.610 |
| PLEKHG3 | YWHAG | psi-mi:“MI:0914”(association) | 0.610 |
| YWHAH | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.570 |
| CFTR | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| YWHAB | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| YWHAQ | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| MYH9 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Bmpr1a | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| ANLN | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Flot1 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| MYO18A | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| MYO1C | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| MYO19 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| FLNA | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Lima1 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| LIMA1 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Calml3 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Tmod3 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Tpm1 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Coro1c | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Ppp6c | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| DBN1 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (126): PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS), PLEKHG3 (Affinity Capture-MS)
ESM2 similar proteins: A0A0G2JUG7, A1L390, E9Q0S6, O08774, O14924, O15085, O43182, O54834, O54960, O60307, O75052, P57095, Q13009, Q3U1V8, Q3U214, Q3UHC7, Q4VAC9, Q5DU25, Q5JU85, Q5RBI7, Q5SXA9, Q5VWQ8, Q60610, Q64512, Q6AX33, Q6DN90, Q6NXJ0, Q6P0Q8, Q6P1I6, Q6ZMN7, Q76G19, Q76LL6, Q76M68, Q7T2V3, Q810W7, Q8CGE9, Q8IX03, Q8R0S2, Q8R4H2, Q8WYP3
Diamond homologs: A1L390, F1M0Z1, O43307, O75962, P91620, P91621, Q0KL02, Q13009, Q1ZXH8, Q3UTH8, Q4VAC9, Q58DL7, Q58EX7, Q5DU57, Q5RDK0, Q60610, Q6KAU7, Q6P720, Q6ZPF3, Q7TNR9, Q96N96, Q9H7P9, Q9NR80, Q9QX73, Q9ULL1, A0JNJ1, A4RF61, A6H8I2, A6NI72, A8MVU1, O15068, O43125, O75886, O89100, O93436, P07751, P10569, P14598, P16086, P16546
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PLEKHG3 | “up-regulates activity” | CDC42 | “guanine nucleotide exchange factor” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 86 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Activation of BAD and translocation to mitochondria | 7 | 96.9× | 6e-11 |
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 6 | 73.3× | 8e-09 |
| SARS-CoV-1 targets host intracellular signalling and regulatory pathways | 6 | 73.3× | 8e-09 |
| Activation of BH3-only proteins | 7 | 63.2× | 1e-09 |
| RHO GTPases activate PAKs | 5 | 49.4× | 1e-06 |
| RHO GTPases activate PKNs | 8 | 46.1× | 8e-10 |
| Intrinsic Pathway for Apoptosis | 7 | 37.3× | 3e-08 |
| FOXO-mediated transcription | 5 | 30.5× | 1e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| substantia nigra development | 5 | 27.8× | 3e-04 |
| actin filament organization | 6 | 10.8× | 2e-03 |
| intracellular protein localization | 6 | 9.5× | 3e-03 |
| actin cytoskeleton organization | 7 | 8.4× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
314 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 242 |
| Likely benign | 37 |
| Benign | 11 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3772398 | NM_001355436.2(SPTB):c.6640G>T (p.Glu2214Ter) | Pathogenic |
SpliceAI
3971 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:64704700:GCTCG:G | donor_gain | 1.0000 |
| 14:64704701:CTCGG:C | donor_loss | 1.0000 |
| 14:64704703:CGGT:C | donor_loss | 1.0000 |
| 14:64704705:G:GG | donor_gain | 1.0000 |
| 14:64727592:GA:G | acceptor_gain | 1.0000 |
| 14:64727592:GAAT:G | acceptor_gain | 1.0000 |
| 14:64727981:AGG:A | donor_loss | 1.0000 |
| 14:64727983:G:GA | donor_loss | 1.0000 |
| 14:64728992:GCAG:G | acceptor_loss | 1.0000 |
| 14:64728993:CAGG:C | acceptor_loss | 1.0000 |
| 14:64730689:G:GG | donor_gain | 1.0000 |
| 14:64730794:CCCAG:C | acceptor_loss | 1.0000 |
| 14:64730796:CA:C | acceptor_loss | 1.0000 |
| 14:64730797:A:AG | acceptor_gain | 1.0000 |
| 14:64730797:AGCTC:A | acceptor_loss | 1.0000 |
| 14:64730798:G:GT | acceptor_gain | 1.0000 |
| 14:64730798:GC:G | acceptor_gain | 1.0000 |
| 14:64730798:GCT:G | acceptor_gain | 1.0000 |
| 14:64730798:GCTCC:G | acceptor_gain | 1.0000 |
| 14:64730931:G:GG | donor_gain | 1.0000 |
| 14:64730946:CCAG:C | donor_loss | 1.0000 |
| 14:64730947:CAGGT:C | donor_loss | 1.0000 |
| 14:64730948:AG:A | donor_loss | 1.0000 |
| 14:64730949:GGTAG:G | donor_loss | 1.0000 |
| 14:64730951:T:A | donor_loss | 1.0000 |
| 14:64731031:T:A | acceptor_gain | 1.0000 |
| 14:64731033:C:CA | acceptor_gain | 1.0000 |
| 14:64731036:A:AG | acceptor_gain | 1.0000 |
| 14:64731036:AG:A | acceptor_gain | 1.0000 |
| 14:64731037:G:A | acceptor_loss | 1.0000 |
AlphaMissense
8007 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:64727945:A:T | E105V | 1.000 |
| 14:64727966:T:C | L112P | 1.000 |
| 14:64730260:T:C | L156P | 1.000 |
| 14:64730293:C:A | A167D | 1.000 |
| 14:64730302:T:C | F170S | 1.000 |
| 14:64730903:T:C | L224P | 1.000 |
| 14:64730906:T:C | L225P | 1.000 |
| 14:64730912:C:A | P227Q | 1.000 |
| 14:64730912:C:G | P227R | 1.000 |
| 14:64730915:T:A | V228D | 1.000 |
| 14:64730919:G:C | Q229H | 1.000 |
| 14:64730919:G:T | Q229H | 1.000 |
| 14:64730920:C:A | R230S | 1.000 |
| 14:64730921:G:C | R230P | 1.000 |
| 14:64730927:T:A | L232H | 1.000 |
| 14:64730927:T:C | L232P | 1.000 |
| 14:64730929:A:G | K233E | 1.000 |
| 14:64730931:G:C | K233N | 1.000 |
| 14:64730931:G:T | K233N | 1.000 |
| 14:64730939:T:C | L236P | 1.000 |
| 14:64730942:T:C | L237P | 1.000 |
| 14:64730945:T:C | L238P | 1.000 |
| 14:64731117:C:A | A266D | 1.000 |
| 14:64732122:T:A | W385R | 1.000 |
| 14:64732122:T:C | W385R | 1.000 |
| 14:64727942:C:T | T104I | 0.999 |
| 14:64727946:G:C | E105D | 0.999 |
| 14:64727946:G:T | E105D | 0.999 |
| 14:64727953:T:C | Y108H | 0.999 |
| 14:64727953:T:G | Y108D | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000015681 (14:64748658 C>T), RS1000035216 (14:64748857 C>A), RS1000145896 (14:64716176 C>G,T), RS1000223451 (14:64708214 C>T), RS1000253433 (14:64730556 C>A,G,T), RS1000286042 (14:64743820 G>T), RS1000334298 (14:64736503 C>G), RS1000423511 (14:64710547 C>T), RS1000481054 (14:64709996 G>T), RS1000574577 (14:64727937 G>T), RS1000590554 (14:64719659 G>A,T), RS1000630108 (14:64734264 G>A,T), RS1000680328 (14:64707907 G>A), RS1000764241 (14:64714005 A>T), RS1000807104 (14:64722095 G>A,T)
Disease associations
OMIM: gene MIM:617940 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): familial hemolytic anemia (MONDO:0003689)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003518_66 | Daytime sleep phenotypes | 4.000000e-06 |
| GCST009462_79 | Optic disc size | 3.000000e-16 |
| GCST009723_89 | Vertical cup-disc ratio (adjusted for vertical disc diameter) | 2.000000e-07 |
| GCST009724_58 | Vertical cup-disc ratio (multi-trait analysis) | 5.000000e-11 |
| GCST90002397_351 | Mean spheric corpuscular volume | 4.000000e-14 |
| GCST90002401_74 | Platelet distribution width | 4.000000e-11 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007828 | daytime rest measurement |
| EFO:0006939 | cup-to-disc ratio measurement |
| EFO:0007984 | platelet component distribution width |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000745 | Anemia, Hemolytic, Congenital | C15.378.050.141.150; C16.320.070 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066528 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.50 | Kd | 0.315 | nM | CHEMBL3752910 |
| 8.26 | ED50 | 5.534 | nM | CHEMBL3752910 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149913: Binding affinity to human PLEKHG3 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0003 | uM |
CTD chemical–gene interactions
49 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Arsenic | affects expression, affects methylation, affects cotreatment, decreases expression, increases abundance | 3 |
| sodium arsenite | affects cotreatment, increases abundance, decreases expression | 2 |
| Benzo(a)pyrene | decreases methylation, affects methylation, decreases expression | 2 |
| Estradiol | increases reaction, affects cotreatment, increases expression, affects binding | 2 |
| Smoke | decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases methylation | 1 |
| trichostatin A | affects expression | 1 |
| beta-lapachone | increases expression | 1 |
| coumarin | affects phosphorylation | 1 |
| muconaldehyde | decreases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| avobenzone | increases expression | 1 |
| polyhexamethyleneguanidine | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| entinostat | increases expression | 1 |
| abrine | increases expression | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Temozolomide | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | decreases response to substance | 1 |
| Acetaminophen | decreases expression | 1 |
| Ethanol | affects cotreatment, increases abundance, increases expression | 1 |
| Caffeine | affects phosphorylation | 1 |
| Copper | affects binding, decreases expression | 1 |
| Cytarabine | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652955 | Binding | Binding affinity to human PLEKHG3 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Clinical trials (associated diseases)
2 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00061568 | PHASE1/PHASE2 | UNKNOWN | Improving the Results of Bone Marrow Transplantation for Patients With Severe Congenital Anemias |
| NCT04902833 | Not specified | COMPLETED | Acquired Pyruvate Kinase Deficiency In Clonal Myeloid Neoplasms |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): familial hemolytic anemia