PLIN5
gene geneOn this page
Also known as LSDP5LSDA5OXPATMLDP
Summary
PLIN5 (perilipin 5, HGNC:33196) is a protein-coding gene on chromosome 19p13.3, encoding Perilipin-5 (Q00G26). Lipid droplet-associated protein that maintains the balance between lipogenesis and lipolysis and also regulates fatty acid oxidation in oxidative tissues.
Predicted to enable identical protein binding activity and lipase binding activity. Predicted to be involved in several processes, including negative regulation of peroxisome proliferator activated receptor signaling pathway; positive regulation of triglyceride storage; and regulation of lipid metabolic process. Located in intracellular membrane-bounded organelle and lipid droplet.
Source: NCBI Gene 440503 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 145 total
- Druggable target: yes — 8 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001013706
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:33196 |
| Approved symbol | PLIN5 |
| Name | perilipin 5 |
| Location | 19p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LSDP5, LSDA5, OXPAT, MLDP |
| Ensembl gene | ENSG00000214456 |
| Ensembl biotype | protein_coding |
| OMIM | 613248 |
| Entrez | 440503 |
Gene structure
Transcript identifiers
Ensembl transcripts: 26 — 23 protein_coding, 2 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000381848, ENST00000586133, ENST00000588887, ENST00000589728, ENST00000590350, ENST00000592610, ENST00000905182, ENST00000905183, ENST00000905184, ENST00000905185, ENST00000905186, ENST00000905187, ENST00000905188, ENST00000905189, ENST00000905190, ENST00000905191, ENST00000905192, ENST00000905193, ENST00000905194, ENST00000905195, ENST00000942350, ENST00000942351, ENST00000942352, ENST00000942353, ENST00000942354, ENST00000942355
RefSeq mRNA: 1 — MANE Select: NM_001013706
NM_001013706
CCDS: CCDS42473
Canonical transcript exons
ENST00000381848 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001490019 | 4529784 | 4529866 |
| ENSE00001532857 | 4522531 | 4524085 |
| ENSE00001532866 | 4525633 | 4525832 |
| ENSE00001532876 | 4529073 | 4529253 |
| ENSE00002941547 | 4535165 | 4535224 |
| ENSE00003464420 | 4534015 | 4534095 |
| ENSE00003471850 | 4531627 | 4531822 |
| ENSE00003524826 | 4524963 | 4525076 |
Expression profiles
Bgee: expression breadth ubiquitous, 227 present calls, max score 98.85.
FANTOM5 (CAGE): breadth broad, TPM avg 2.1258 / max 291.2185, expressed in 441 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 178447 | 2.1258 | 441 |
Top tissues by expression
244 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lobe of liver | UBERON:0001114 | 98.85 | gold quality |
| apex of heart | UBERON:0002098 | 98.37 | gold quality |
| body of pancreas | UBERON:0001150 | 98.23 | gold quality |
| gastrocnemius | UBERON:0001388 | 97.37 | gold quality |
| left ovary | UBERON:0002119 | 96.88 | gold quality |
| right ovary | UBERON:0002118 | 96.67 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 95.96 | gold quality |
| tibialis anterior | UBERON:0001385 | 95.89 | gold quality |
| body of stomach | UBERON:0001161 | 95.70 | gold quality |
| muscle of leg | UBERON:0001383 | 95.42 | gold quality |
| liver | UBERON:0002107 | 94.66 | gold quality |
| heart left ventricle | UBERON:0002084 | 94.26 | gold quality |
| cardiac ventricle | UBERON:0002082 | 93.87 | gold quality |
| omental fat pad | UBERON:0010414 | 92.64 | gold quality |
| peritoneum | UBERON:0002358 | 92.59 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 92.52 | gold quality |
| quadriceps femoris | UBERON:0001377 | 92.41 | silver quality |
| vastus lateralis | UBERON:0001379 | 92.28 | silver quality |
| minor salivary gland | UBERON:0001830 | 92.15 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 91.57 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 91.52 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 91.39 | gold quality |
| biceps brachii | UBERON:0001507 | 91.24 | gold quality |
| right atrium auricular region | UBERON:0006631 | 91.22 | gold quality |
| deltoid | UBERON:0001476 | 91.08 | silver quality |
| adipose tissue | UBERON:0001013 | 90.91 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 90.74 | gold quality |
| cardiac atrium | UBERON:0002081 | 90.52 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 90.40 | gold quality |
| stomach | UBERON:0000945 | 90.37 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 11.72 |
| E-CURD-135 | no | 481.19 |
| E-MTAB-6379 | no | 28.10 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CEBPA, PPARA, PPARD, PPARG
miRNA regulators (miRDB)
37 targeting PLIN5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-3912-5P | 99.95 | 66.11 | 925 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-4503 | 99.85 | 71.45 | 1869 |
| HSA-MIR-7159-5P | 99.53 | 72.12 | 2472 |
| HSA-MIR-4437 | 99.52 | 65.29 | 1266 |
| HSA-MIR-486-3P | 99.51 | 66.82 | 1901 |
| HSA-MIR-3612 | 99.45 | 66.02 | 1333 |
| HSA-MIR-650 | 99.45 | 65.77 | 1309 |
| HSA-MIR-330-3P | 99.41 | 69.95 | 2521 |
| HSA-MIR-4284 | 99.36 | 65.25 | 1293 |
| HSA-MIR-6731-5P | 99.28 | 67.42 | 2375 |
| HSA-MIR-8085 | 99.28 | 67.56 | 2362 |
| HSA-MIR-3978 | 99.24 | 68.39 | 2201 |
| HSA-MIR-4263 | 99.18 | 69.25 | 2236 |
| HSA-MIR-1286 | 99.09 | 66.23 | 1046 |
| HSA-MIR-6830-5P | 99.01 | 68.73 | 1884 |
| HSA-MIR-520G-3P | 98.91 | 67.38 | 1914 |
| HSA-MIR-520H | 98.91 | 67.38 | 1914 |
| HSA-MIR-5000-3P | 98.79 | 65.63 | 1251 |
| HSA-MIR-3922-5P | 98.77 | 66.53 | 1059 |
| HSA-MIR-323A-5P | 98.59 | 65.13 | 651 |
| HSA-MIR-561-5P | 98.25 | 68.13 | 1365 |
| HSA-MIR-6773-3P | 98.17 | 65.51 | 1213 |
| HSA-MIR-124-5P | 98.11 | 67.65 | 1095 |
| HSA-MIR-4632-5P | 97.82 | 65.38 | 1470 |
| HSA-MIR-4733-5P | 97.75 | 67.44 | 866 |
| HSA-MIR-5699-5P | 97.36 | 67.03 | 1014 |
Literature-anchored findings (GeneRIF, showing 20)
- Results indicate involvement of OXPAT and ADRP in muscular lipid accumulation and type 2 diabetes. (PMID:19602560)
- interaction of ATGL with CGI-58 increased lipolysis, whereas interaction of ATGL with perilipin 5 decreased lipolysis. (PMID:21393244)
- Perilipin 5 is the most recently established family member, highly expressed in oxidative tissues and could play an important role in regulating LD TAG hydrolysis in oxidative mammalian tissues. [Review] (PMID:21632259)
- The lipid droplet coat protein perilipin 5 also localizes to muscle mitochondria. (PMID:22127648)
- PLIN5 likely plays an important role in intramyocellular lipid accumulation and oxidation, both of which increase with endurance training in human skeletal muscle. (PMID:22667335)
- Sprint interval and traditional endurance training increase net intramuscular triglyceride breakdown and expression of perilipin 2 and 5 (PMID:23129790)
- Perilipin 5 as a lipid droplet protein adapted to mitochondrial energy utilization (PMID:24535284)
- PLIN5 was significantly colocated with ATGL, mitochondria and CGI-58, indicating a close association between the key lipolytic effectors in resting skeletal muscle. (PMID:25054327)
- High oxygen consumption in middle-aged men was reflected in higher perilipin 5 expression in skeletal muscle. (PMID:26447519)
- Notch1 expression is reduced and glucose-6-phosphatase and perilipin-5 (G6PC/PLIN5) are upregulated in liver biopsies from nonalcoholic steatohepatitis (NASH) and nonalcoholic fatty liver disease (NAFLD) patients. (PMID:27428080)
- The data highlight a key role of PLIN5 in lipid droplets function, first by finely adjusting lipid droplets fatty acids supply to mitochondrial oxidation, and second acting as a protective factor against lipotoxicity in skeletal muscle. (PMID:27922115)
- Even though total PLIN5 protein content was almost double in Trained versus type 2 diabetes patients, PLIN5 coating did not affect lipid droplet number or size significantly. (PMID:29110300)
- perilipin 5 is not restricted to certain cell types but localizes to distinct lipid droplet subpopulations reflecting a possible function in oxidative energy supply in normal tissues and in diseases. (PMID:29752569)
- Using two super-resolution imaging approaches, the study shows that in sections of human skeletal muscle PLIN2 and PLIN5 localize to lipid droplets (LD) at distinct sites, with abundance of PLIN5 at LD-mitochondria tethering sites. (PMID:30591149)
- Lsdp5 expression is instrumental for reducing lipotoxicity in cultured liver cells. (PMID:31173228)
- Decoration of myocellular lipid droplets with perilipins as a marker for in vivo lipid droplet dynamics: A super-resolution microscopy study in trained athletes and insulin resistant individuals. (PMID:33160079)
- Enlarged PLIN5-uncoated lipid droplets in inner regions of skeletal muscle type II fibers associate with type 2 diabetes. (PMID:35220055)
- Plin5 Bidirectionally Regulates Lipid Metabolism in Oxidative Tissues. (PMID:35401929)
- Effects of perilipin-5 on lipid metabolism and high-sensitivity cardiac troponin I. (PMID:36134829)
- PLIN5 interacts with FATP4 at membrane contact sites to promote lipid droplet-to-mitochondria fatty acid transport. (PMID:37290445)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | plin3 | ENSDARG00000013711 |
| mus_musculus | Plin5 | ENSMUSG00000011305 |
| rattus_norvegicus | Plin5 | ENSRNOG00000047860 |
| drosophila_melanogaster | Lsd-2 | FBGN0030608 |
Paralogs (4): PLIN3 (ENSG00000105355), PLIN2 (ENSG00000147872), PLIN1 (ENSG00000166819), PLIN4 (ENSG00000167676)
Protein
Protein identifiers
Perilipin-5 — Q00G26 (reviewed: Q00G26)
Alternative names: Lipid storage droplet protein 5
All UniProt accessions (2): Q00G26, K7EIX1
UniProt curated annotations — full annotation on UniProt →
Function. Lipid droplet-associated protein that maintains the balance between lipogenesis and lipolysis and also regulates fatty acid oxidation in oxidative tissues. Recruits mitochondria to the surface of lipid droplets and is involved in lipid droplet homeostasis by regulating both the storage of fatty acids in the form of triglycerides and the release of fatty acids for mitochondrial fatty acid oxidation. In lipid droplet triacylglycerol hydrolysis, plays a role as a scaffolding protein for three major key lipolytic players: ABHD5, PNPLA2 and LIPE. Reduces the triacylglycerol hydrolase activity of PNPLA2 by recruiting and sequestering PNPLA2 to lipid droplets. Phosphorylation by PKA enables lipolysis probably by promoting release of ABHD5 from the perilipin scaffold and by facilitating interaction of ABHD5 with PNPLA2. Also increases lipolysis through interaction with LIPE and upon PKA-mediated phosphorylation of LIPE.
Subunit / interactions. Homooligomer. Interacts with PNPLA2; prevents interaction of PNPLA2 with ABHD5. Interacts with ABHD5; targets ABHD5 to lipid droplets and promotes interaction of ABHD5 with PNPLA2. Interacts with LIPE.
Subcellular location. Lipid droplet. Cytoplasm. Mitochondrion.
Tissue specificity. Expressed in skeletal muscle, liver, heart and kidney.
Post-translational modifications. Phosphorylated by PKA. Phosphorylated on serine in skeletal muscle at rest or upon lipolytic stimulation.
Induction. Increased by endurance and sprint interval training.
Similarity. Belongs to the perilipin family.
RefSeq proteins (1): NP_001013728* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004279 | Perilipin | Family |
Pfam: PF03036
UniProt features (11 total): region of interest 4, sequence variant 3, modified residue 3, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q00G26-F1 | 66.54 | 0.11 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 2, 148, 322
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 156 (showing top):
GOBP_LIPID_MODIFICATION, GOBP_FATTY_ACID_CATABOLIC_PROCESS, GOBP_REGULATION_OF_LIPID_STORAGE, GOBP_REGULATION_OF_TRIGLYCERIDE_METABOLIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_LIPID_METABOLIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_REACTIVE_OXYGEN_SPECIES_METABOLIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_HYDROLASE_ACTIVITY, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, GOBP_KETONE_METABOLIC_PROCESS, GOBP_REGULATION_OF_FATTY_ACID_METABOLIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION, GOBP_GLYCEROLIPID_METABOLIC_PROCESS, GOBP_REGULATION_OF_LIPID_BIOSYNTHETIC_PROCESS, GOBP_POSITIVE_REGULATION_OF_CATALYTIC_ACTIVITY
GO Biological Process (14): positive regulation of triglyceride biosynthetic process (GO:0010867), positive regulation of lipid storage (GO:0010884), positive regulation of triglyceride storage (GO:0010890), negative regulation of triglyceride catabolic process (GO:0010897), lipid storage (GO:0019915), negative regulation of fatty acid beta-oxidation (GO:0031999), positive regulation of fatty acid beta-oxidation (GO:0032000), lipid droplet organization (GO:0034389), negative regulation of peroxisome proliferator activated receptor signaling pathway (GO:0035359), mitochondrion localization (GO:0051646), negative regulation of lipase activity (GO:0060192), positive regulation of lipase activity (GO:0060193), negative regulation of reactive oxygen species metabolic process (GO:2000378), negative regulation of lipid catabolic process (GO:0050995)
GO Molecular Function (3): lipase binding (GO:0035473), identical protein binding (GO:0042802), protein binding (GO:0005515)
GO Cellular Component (4): cytoplasm (GO:0005737), mitochondrion (GO:0005739), lipid droplet (GO:0005811), cytosol (GO:0005829)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| negative regulation of lipid catabolic process | 2 |
| fatty acid beta-oxidation | 2 |
| regulation of fatty acid beta-oxidation | 2 |
| lipase activity | 2 |
| cellular anatomical structure | 2 |
| cytoplasm | 2 |
| regulation of triglyceride biosynthetic process | 1 |
| triglyceride biosynthetic process | 1 |
| positive regulation of lipid biosynthetic process | 1 |
| positive regulation of triglyceride metabolic process | 1 |
| regulation of lipid storage | 1 |
| lipid storage | 1 |
| positive regulation of cellular process | 1 |
| positive regulation of lipid localization | 1 |
| positive regulation of lipid storage | 1 |
| regulation of triglyceride storage | 1 |
| triglyceride storage | 1 |
| regulation of triglyceride catabolic process | 1 |
| triglyceride catabolic process | 1 |
| negative regulation of triglyceride metabolic process | 1 |
| nutrient storage | 1 |
| negative regulation of fatty acid oxidation | 1 |
| positive regulation of fatty acid oxidation | 1 |
| positive regulation of lipid catabolic process | 1 |
| organelle organization | 1 |
| peroxisome proliferator activated receptor signaling pathway | 1 |
| regulation of peroxisome proliferator activated receptor signaling pathway | 1 |
| negative regulation of intracellular signal transduction | 1 |
| organelle localization | 1 |
| negative regulation of hydrolase activity | 1 |
| positive regulation of hydrolase activity | 1 |
| negative regulation of metabolic process | 1 |
| reactive oxygen species metabolic process | 1 |
| regulation of reactive oxygen species metabolic process | 1 |
| negative regulation of catabolic process | 1 |
| lipid catabolic process | 1 |
| negative regulation of lipid metabolic process | 1 |
| regulation of lipid catabolic process | 1 |
| enzyme binding | 1 |
| protein binding | 1 |
Protein interactions and networks
STRING
1385 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PLIN5 | PNPLA2 | Q96AD5 | 984 |
| PLIN5 | ABHD5 | Q8WTS1 | 928 |
| PLIN5 | PPARA | Q07869 | 844 |
| PLIN5 | LIPE | Q05469 | 795 |
| PLIN5 | CIDEC | Q96AQ7 | 668 |
| PLIN5 | PPARGC1A | Q9UBK2 | 660 |
| PLIN5 | DGAT2 | Q96PD7 | 603 |
| PLIN5 | PPARG | P37231 | 601 |
| PLIN5 | DGAT1 | O75907 | 583 |
| PLIN5 | PLIN1 | O60240 | 565 |
| PLIN5 | MFN2 | O95140 | 557 |
| PLIN5 | SIRT1 | Q96EB6 | 543 |
| PLIN5 | VPS13D | Q5THJ4 | 522 |
| PLIN5 | FITM2 | Q8N6M3 | 518 |
| PLIN5 | CIDEA | O60543 | 510 |
IntAct
11 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PLIN5 | ABHD5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PLIN5 | INPPL1 | psi-mi:“MI:0914”(association) | 0.530 |
| ENC1 | PLIN5 | psi-mi:“MI:0914”(association) | 0.530 |
| CFLAR | PLIN5 | psi-mi:“MI:0914”(association) | 0.530 |
| HTR3C | GET1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (18): METAP2 (Affinity Capture-MS), INPPL1 (Affinity Capture-MS), SAPCD2 (Affinity Capture-MS), PLIN5 (Affinity Capture-MS), PLIN5 (FRET), PLIN5 (Affinity Capture-Western), PLIN5 (Affinity Capture-MS), SAPCD2 (Affinity Capture-MS), PLIN5 (Affinity Capture-MS), METAP2 (Affinity Capture-MS), INPPL1 (Affinity Capture-MS), PLIN5 (Affinity Capture-MS), PLIN5 (Affinity Capture-MS), METAP2 (Affinity Capture-MS), PLIN5 (Affinity Capture-MS)
ESM2 similar proteins: A0A9P5BNK0, A2Y0H2, A6QLL0, B0FJL7, E9F970, F4JNX2, M0R7Z9, O48832, O60240, O60664, O82246, O82803, P0DKW0, P0DMN9, P0DMS3, P0DOC1, P0DP52, P0DTQ9, P0DUX6, P0DUX7, P0DUY0, P0DUY1, P12278, P15252, P18658, P19034, P29530, P43883, P43884, Q00368, Q00G26, Q41112, Q4PLW0, Q5BLZ2, Q5RAV8, Q69YL0, Q84K90, Q8BVZ1, Q8CGN5, Q99541
Diamond homologs: A6QLL0, B0FJL7, M0R7Z9, O60240, O60664, P43883, Q00G26, Q4PLW0, Q5BLZ2, Q5RAV8, Q8BVZ1, Q8CGN5, Q99541, Q9DBG5, Q9TUM6, Q96Q06, P43884, O88492, E9F970
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
145 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 124 |
| Likely benign | 8 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1678 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:4525073:CTAT:C | acceptor_gain | 1.0000 |
| 19:4525074:TAT:T | acceptor_gain | 1.0000 |
| 19:4525076:TCTG:T | acceptor_loss | 1.0000 |
| 19:4525077:C:CA | acceptor_loss | 1.0000 |
| 19:4525077:C:CC | acceptor_gain | 1.0000 |
| 19:4525632:CCAG:C | donor_gain | 1.0000 |
| 19:4529066:T:TA | donor_gain | 1.0000 |
| 19:4529067:CCTCA:C | donor_loss | 1.0000 |
| 19:4529068:CTCA:C | donor_loss | 1.0000 |
| 19:4529069:TCAC:T | donor_loss | 1.0000 |
| 19:4529070:CAC:C | donor_loss | 1.0000 |
| 19:4529071:A:AC | donor_gain | 1.0000 |
| 19:4529071:A:C | donor_loss | 1.0000 |
| 19:4529072:C:CC | donor_gain | 1.0000 |
| 19:4529072:C:G | donor_loss | 1.0000 |
| 19:4529072:CCGAG:C | donor_gain | 1.0000 |
| 19:4529081:T:TA | donor_gain | 1.0000 |
| 19:4531625:A:AC | donor_gain | 1.0000 |
| 19:4531626:C:CT | donor_gain | 1.0000 |
| 19:4531626:CG:C | donor_gain | 1.0000 |
| 19:4531819:CGTT:C | acceptor_gain | 1.0000 |
| 19:4535160:CTCA:C | donor_loss | 1.0000 |
| 19:4535161:TCACC:T | donor_loss | 1.0000 |
| 19:4535162:CAC:C | donor_loss | 1.0000 |
| 19:4535163:ACCT:A | donor_loss | 1.0000 |
| 19:4525535:T:TA | donor_gain | 0.9900 |
| 19:4525586:A:AC | donor_gain | 0.9900 |
| 19:4525587:C:CC | donor_gain | 0.9900 |
| 19:4525590:ATTGG:A | donor_gain | 0.9900 |
| 19:4525628:CTCA:C | donor_loss | 0.9900 |
AlphaMissense
2976 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:4523786:G:C | F378L | 0.973 |
| 19:4523786:G:T | F378L | 0.973 |
| 19:4523788:A:G | F378L | 0.973 |
| 19:4523531:G:C | F463L | 0.967 |
| 19:4523531:G:T | F463L | 0.967 |
| 19:4523533:A:G | F463L | 0.967 |
| 19:4523803:A:G | W373R | 0.964 |
| 19:4523803:A:T | W373R | 0.964 |
| 19:4529845:G:T | A93D | 0.959 |
| 19:4525718:G:T | A212D | 0.957 |
| 19:4531704:G:T | A60D | 0.956 |
| 19:4525652:A:G | L234P | 0.955 |
| 19:4523699:C:A | W407C | 0.953 |
| 19:4523699:C:G | W407C | 0.953 |
| 19:4523701:A:G | W407R | 0.951 |
| 19:4523701:A:T | W407R | 0.951 |
| 19:4523801:C:A | W373C | 0.951 |
| 19:4523801:C:G | W373C | 0.951 |
| 19:4531716:G:T | A56D | 0.950 |
| 19:4531788:A:T | V32D | 0.950 |
| 19:4531742:C:A | K47N | 0.947 |
| 19:4531742:C:G | K47N | 0.947 |
| 19:4523794:C:G | G376R | 0.946 |
| 19:4523794:C:T | G376R | 0.946 |
| 19:4529854:T:A | N90I | 0.943 |
| 19:4525759:A:C | F198L | 0.942 |
| 19:4525759:A:T | F198L | 0.942 |
| 19:4525761:A:G | F198L | 0.942 |
| 19:4525730:A:G | I208T | 0.934 |
| 19:4523793:C:T | G376E | 0.932 |
dbSNP variants (sampled 300 via entrez): RS1000183024 (19:4530825 A>G), RS1000344424 (19:4533244 C>T), RS1000404285 (19:4529006 G>C), RS1000579252 (19:4523076 G>A,T), RS1000634010 (19:4534209 G>A), RS1000784970 (19:4529926 G>A,T), RS1000947718 (19:4533785 A>G), RS1000998708 (19:4533604 G>C), RS1001059447 (19:4522904 C>G,T), RS1001069827 (19:4526229 T>G), RS1001272223 (19:4532019 T>C), RS1001320956 (19:4535082 G>A), RS1001519993 (19:4528204 C>A,T), RS1001686179 (19:4526929 GA>G), RS1001751843 (19:4524125 C>T)
Disease associations
OMIM: gene MIM:613248 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3885501 (PROTEIN-PROTEIN INTERACTION)
Molecules with ChEMBL bioactivity
8 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 279,056 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL12856 | INAMRINONE | 4 | 9,690 |
| CHEMBL193 | NIFEDIPINE | 4 | 74,353 |
| CHEMBL388590 | BENZBROMARONE | 4 | 8,245 |
| CHEMBL456 | ETHACRYNIC ACID | 4 | 20,004 |
| CHEMBL590 | MENADIONE | 4 | 21,034 |
| CHEMBL964 | DISULFIRAM | 4 | 38,611 |
| CHEMBL140 | CURCUMIN | 3 | 93,882 |
| CHEMBL51085 | EBSELEN | 3 | 13,237 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
196 measured of 258 human assays (278 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| (4-acetyloxy-3-chloranyl-2-morpholin-4-yl-naphthalen-1-yl) ethanoate | EC50 | 0.133 nM |
| (5R)-6-[6-[(1E,3S,5Z)-3-hydroxyundeca-1,5-dienyl]pyridin-2-yl]hexane-1,5-diol | KI | 25 nM |
| N-[4-(methoxymethyl)-1-(2-thiophen-2-ylethyl)piperidin-4-yl]-N-phenyl-propanamide;2-oxidanylpropane-1,2,3-tricarboxylic acid | KI | 50 nM |
| SMR000469200 | KI | 126 nM |
| MLS000122969 | IC50 | 127 nM |
| 2-{2-ethoxy-5-[(4-ethylpiperazine-1-)sulfonyl]phenyl}-5-methyl-7-propyl-3H,4H-imidazo[1,5-a][1,2,4]triazin-4-one | IC50 | 300 nM |
| (3Z,5E)-1-ethyl-3,5-bis(3-hydroxy-4-methoxy-benzylidene)-4-piperidone | EC50 | 380 nM |
| 2-butyl-4-thiazolidinecarboxylic acid | IC50 | 814 nM |
| N-cyclohexyl-2-[3-(2-furanyl)-2-oxo-1-quinoxalinyl]-2-phenylacetamide | IC50 | 817 nM |
| SMR001821229 | IC50 | 828 nM |
| cid_53383152 | IC50 | 970 nM |
| 5-hydroxy-4-[[4-(2-hydroxyethyl)-1-piperazinyl]methyl]-2-methyl-3-benzo[g]benzofurancarboxylic acid ethyl ester | IC50 | 1130 nM |
| 7-methyl-1,3-dinitro-acridine | EC50 | 1190 nM |
| MLS000684313 | IC50 | 1230 nM |
| N-benzyl-2-(4-cyanophenyl)-2-[3-(furan-2-yl)-2-oxoquinoxalin-1-yl]acetamide | IC50 | 1300 nM |
| cid_53383173 | IC50 | 1340 nM |
| cid_53383343 | IC50 | 1400 nM |
| cid_53383347 | IC50 | 1480 nM |
| N-cyclohexyl-2-[3-(2-furanyl)-2-oxo-1-quinoxalinyl]-2-(1-naphthalenyl)acetamide | IC50 | 1480 nM |
| cid_6377798 | IC50 | 1560 nM |
| MLS000680483 | IC50 | 1590 nM |
| (E)-2-cyano-3-[3-[(E)-2-cyano-3-(2-methoxyethylamino)-3-oxidanylidene-prop-1-enyl]phenyl]-N-(2-methoxyethyl)prop-2-enamide | EC50 | 1650 nM |
| N-tert-butyl-2-cyclopropyl-2-[3-(2-furanyl)-2-oxo-1-quinoxalinyl]acetamide | IC50 | 1720 nM |
| N-cyclohexyl-2-[3-(2-furanyl)-2-oxo-1-quinoxalinyl]-2-(4-methoxyphenyl)acetamide | IC50 | 1750 nM |
| N-tert-butyl-2-[3-(2-furanyl)-2-oxo-1-quinoxalinyl]-2-(4-methoxyphenyl)acetamide | IC50 | 1780 nM |
| MLS003674221 | IC50 | 1810 nM |
| cid_53383334 | IC50 | 1840 nM |
| N-tert-butyl-2-(2-fluorophenyl)-2-[3-(furan-2-yl)-2-oxoquinoxalin-1-yl]acetamide | IC50 | 1850 nM |
| MLS003674201 | IC50 | 1860 nM |
| MLS003674212 | IC50 | 1860 nM |
| N-Tosyl-L-phenylalanine chloromethyl ketone | IC50 | 1870 nM |
| MLS000779343 | IC50 | 1870 nM |
| SMR000132574 | IC50 | 1870 nM |
| 1-(2-fluorophenyl)-5-{4-[(5-nitro-2-pyridinyl)oxy]benzylidene}-2,4,6(1H,3H,5H)-pyrimidinetrione | IC50 | 1880 nM |
| N-tert-butyl-2-[3-(furan-2-yl)-2-oxoquinoxalin-1-yl]-2-(4-phenylphenyl)acetamide | IC50 | 1910 nM |
| 2-(1-benzofuran-2-yl)-2-[3-(furan-2-yl)-2-oxoquinoxalin-1-yl]-N-pentylacetamide | IC50 | 2000 nM |
| cid_53383163 | IC50 | 2020 nM |
| methyl 1-(2-furylmethyl)-2-methyl-4-(4-nitrobenzylidene)-5-oxo-4,5-dihydro-1H-pyrrole-3-carboxylate | IC50 | 2070 nM |
| MLS000517420 | IC50 | 2170 nM |
| cid_53383333 | IC50 | 2170 nM |
| 2-(1-benzofuran-2-yl)-N-cyclohexyl-2-[3-(furan-2-yl)-2-oxidanylidene-quinoxalin-1-yl]ethanamide | IC50 | 2190 nM |
| cid_2261569 | IC50 | 2210 nM |
| N-cyclohexyl-2-[3-(furan-2-yl)-2-oxidanylidene-quinoxalin-1-yl]-2-quinolin-4-yl-ethanamide | IC50 | 2230 nM |
| 2-(2-fluorophenyl)-2-[3-(furan-2-yl)-2-oxidanylidene-quinoxalin-1-yl]-N-(phenylmethyl)ethanamide | IC50 | 2240 nM |
| Cyclopentanone, 2-heptylidene-5-(1-pyrrolidinylmethyl)-, (E)-, hydrochloride | IC50 | 2250 nM |
| MLS000532188 | IC50 | 2270 nM |
| N-tert-butyl-2-[3-(furan-2-yl)-2-oxoquinoxalin-1-yl]-2-naphthalen-1-ylacetamide | IC50 | 2270 nM |
| 3-phenyl-1,4-benzodioxin-2-carboxaldehyde | EC50 | 2280 nM |
| MLS003674211 | IC50 | 2400 nM |
| MLS003674210 | IC50 | 2410 nM |
ChEMBL bioactivities
32 potent at pChembl≥5 of 44 total, top 32 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.96 | IC50 | 1101 | nM | EBSELEN |
| 5.95 | IC50 | 1123 | nM | CHEMBL1565221 |
| 5.83 | IC50 | 1484 | nM | CHEMBL17201 |
| 5.79 | IC50 | 1622 | nM | DISULFIRAM |
| 5.72 | IC50 | 1901 | nM | TPCK |
| 5.64 | IC50 | 2269 | nM | CHEMBL1500987 |
| 5.55 | IC50 | 2798 | nM | CHEMBL1535633 |
| 5.51 | IC50 | 3103 | nM | CHEMBL1369296 |
| 5.48 | IC50 | 3300 | nM | CHEMBL1462108 |
| 5.47 | IC50 | 3408 | nM | CHEMBL1363719 |
| 5.45 | IC50 | 3573 | nM | CHEMBL1598561 |
| 5.41 | IC50 | 3906 | nM | CHEMBL1352555 |
| 5.40 | IC50 | 3942 | nM | CHEMBL1414703 |
| 5.37 | IC50 | 4245 | nM | CHALCONE |
| 5.33 | IC50 | 4641 | nM | CHEMBL1426508 |
| 5.32 | IC50 | 4832 | nM | ETHACRYNIC ACID |
| 5.31 | IC50 | 4850 | nM | CHEMBL1498750 |
| 5.28 | IC50 | 5240 | nM | CHEMBL485636 |
| 5.28 | IC50 | 5283 | nM | CHEMBL1256923 |
| 5.24 | IC50 | 5718 | nM | CHEMBL1522846 |
| 5.21 | IC50 | 6238 | nM | CHEMBL1507428 |
| 5.19 | IC50 | 6443 | nM | 9,10-PHENANTHRENEQUINONE |
| 5.16 | IC50 | 6958 | nM | CHEMBL1519501 |
| 5.16 | IC50 | 6970 | nM | CHEMBL1478754 |
| 5.15 | IC50 | 7133 | nM | NIFEDIPINE |
| 5.12 | IC50 | 7587 | nM | CHEMBL1308170 |
| 5.09 | IC50 | 8122 | nM | CHEMBL1366427 |
| 5.06 | IC50 | 8697 | nM | CHEMBL1433108 |
| 5.05 | IC50 | 8908 | nM | CHEMBL1548890 |
| 5.02 | IC50 | 9468 | nM | MENADIONE |
| 5.01 | IC50 | 9841 | nM | CHEMBL1334291 |
| 5.00 | IC50 | 9956 | nM | CHEMBL1517036 |
CTD chemical–gene interactions
36 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects binding, increases reaction, decreases expression, increases expression | 3 |
| triphenyl phosphate | decreases expression, increases abundance, affects expression | 2 |
| (+)-JQ1 compound | increases expression | 2 |
| Benzo(a)pyrene | decreases expression, decreases methylation, increases methylation | 2 |
| Estradiol | affects cotreatment, decreases expression, increases expression | 2 |
| OTX015 | increases expression | 1 |
| mivebresib | increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| bisphenol A | affects cotreatment, decreases expression | 1 |
| trichostatin A | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| ICG 001 | decreases expression | 1 |
| licochalcone B | increases expression | 1 |
| bisphenol S | affects cotreatment, decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Dexamethasone | affects cotreatment, decreases expression, increases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Flame Retardants | decreases expression, increases abundance | 1 |
| Indomethacin | affects cotreatment, decreases expression, increases expression | 1 |
| N-Nitrosopyrrolidine | decreases expression | 1 |
| Nickel | decreases expression | 1 |
| Thiram | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Triclosan | decreases expression | 1 |
| Urethane | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1738081 | Binding | PUBCHEM_BIOASSAY: Luminescence-based biochemical high throughput dose response assay for inhibitors of the interaction of the lipase co-activator protein, abhydrolase domain containing 5 (ABHD5) with perilipin-5 (MLDP; PLIN5) (2K validation | PubChem BioAssay data set |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.