PLPP5
gene geneOn this page
Also known as HTPAPDPPL1
Summary
PLPP5 (phospholipid phosphatase 5, HGNC:25026) is a protein-coding gene on chromosome 8p11.23, encoding Phospholipid phosphatase 5 (Q8NEB5). Magnesium-independent phospholipid phosphatase with broad substrate specificity.
Enables diacylglycerol diphosphate phosphatase activity and phosphatidate phosphatase activity. Involved in phospholipid dephosphorylation. Predicted to be located in cytoplasm and plasma membrane. Predicted to be active in membrane.
Source: NCBI Gene 84513 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 1 total
- MANE Select transcript:
NM_001102559
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25026 |
| Approved symbol | PLPP5 |
| Name | phospholipid phosphatase 5 |
| Location | 8p11.23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HTPAP, DPPL1 |
| Ensembl gene | ENSG00000147535 |
| Ensembl biotype | protein_coding |
| OMIM | 610626 |
| Entrez | 84513 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 8 protein_coding, 4 protein_coding_CDS_not_defined, 3 retained_intron, 1 nonsense_mediated_decay
ENST00000419686, ENST00000422581, ENST00000424479, ENST00000524409, ENST00000524616, ENST00000527758, ENST00000527793, ENST00000528814, ENST00000529359, ENST00000530193, ENST00000530432, ENST00000531109, ENST00000531483, ENST00000531823, ENST00000534339, ENST00000935602
RefSeq mRNA: 10 — MANE Select: NM_001102559
NM_001102559, NM_001102560, NM_001354452, NM_001354454, NM_001354456, NM_001354457, NM_001354458, NM_001354459, NM_001410920, NM_032483
CCDS: CCDS47841, CCDS47842, CCDS47843, CCDS87598, CCDS94281
Canonical transcript exons
ENST00000424479 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001639664 | 38268882 | 38268990 |
| ENSE00001648622 | 38263130 | 38264604 |
| ENSE00002304873 | 38269126 | 38269224 |
| ENSE00003470591 | 38266141 | 38266311 |
| ENSE00003486456 | 38268371 | 38268461 |
| ENSE00003620558 | 38267267 | 38267391 |
| ENSE00003627486 | 38267897 | 38267960 |
Expression profiles
Bgee: expression breadth ubiquitous, 232 present calls, max score 98.95.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 18.0682 / max 254.9153, expressed in 1753 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 92737 | 15.9756 | 1753 |
| 92736 | 2.0925 | 1067 |
Top tissues by expression
250 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| body of pancreas | UBERON:0001150 | 98.95 | gold quality |
| right uterine tube | UBERON:0001302 | 98.39 | gold quality |
| adenohypophysis | UBERON:0002196 | 98.33 | gold quality |
| pituitary gland | UBERON:0000007 | 97.73 | gold quality |
| pancreas | UBERON:0001264 | 97.59 | gold quality |
| islet of Langerhans | UBERON:0000006 | 96.64 | gold quality |
| rectum | UBERON:0001052 | 96.43 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 95.99 | gold quality |
| body of stomach | UBERON:0001161 | 95.93 | gold quality |
| prostate gland | UBERON:0002367 | 95.87 | gold quality |
| gall bladder | UBERON:0002110 | 95.70 | gold quality |
| endocervix | UBERON:0000458 | 95.62 | gold quality |
| bone marrow cell | CL:0002092 | 95.60 | gold quality |
| right coronary artery | UBERON:0001625 | 95.59 | gold quality |
| stromal cell of endometrium | CL:0002255 | 95.36 | gold quality |
| cortical plate | UBERON:0005343 | 95.27 | gold quality |
| ganglionic eminence | UBERON:0004023 | 95.15 | gold quality |
| minor salivary gland | UBERON:0001830 | 95.03 | gold quality |
| stomach | UBERON:0000945 | 95.00 | gold quality |
| vermiform appendix | UBERON:0001154 | 95.00 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 94.90 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 94.88 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 94.76 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 94.64 | gold quality |
| metanephros cortex | UBERON:0010533 | 94.36 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 94.27 | gold quality |
| ascending aorta | UBERON:0001496 | 94.22 | gold quality |
| spleen | UBERON:0002106 | 94.18 | gold quality |
| left coronary artery | UBERON:0001626 | 94.16 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 94.10 | gold quality |
Single-cell (SCXA)
Detected in 11 experiment(s), a significant marker in 10.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-4 | yes | 106.77 |
| E-CURD-88 | yes | 99.81 |
| E-CURD-122 | yes | 67.35 |
| E-MTAB-9467 | yes | 53.02 |
| E-CURD-46 | yes | 46.93 |
| E-MTAB-8410 | yes | 40.40 |
| E-HCAD-1 | yes | 36.97 |
| E-ANND-3 | yes | 32.35 |
| E-HCAD-11 | yes | 25.30 |
| E-MTAB-10553 | yes | 13.14 |
| E-GEOD-124858 | no | 130.83 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
7 targeting PLPP5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-137-3P | 99.87 | 74.74 | 2401 |
| HSA-MIR-4799-5P | 99.82 | 70.60 | 2663 |
| HSA-MIR-5197-3P | 98.71 | 67.05 | 1905 |
| HSA-MIR-16-1-3P | 98.70 | 69.23 | 1538 |
| HSA-MIR-6750-3P | 96.79 | 67.50 | 740 |
| HSA-MIR-759 | 96.16 | 66.77 | 873 |
Literature-anchored findings (GeneRIF, showing 7)
- HTPAP is a novel metastatic suppressor gene for hepatocellular carcinoma (PMID:16261160)
- DPPL1 and DPPL2 represent a novel type of mammalian phosphatidate phosphatase. (PMID:17590538)
- microarray experiments on PPAPDC1B knockdown indicated this gene interfered with cell signaling pathways, including Janus-activated kinase-signal transducer and activator of transcription, mitogen-activated protein kinase, and protein kinase C pathways (PMID:18757432)
- HTPAP-1 may be the transcript of HTPAP to exhibit a suppressive role on hepatocellular cancer(HCC) metastasis, and can be a prognostic marker for HCC. (PMID:21219541)
- Findings identify an HTPAP genotype and associated gene expression pattern that favors metastasis progression and that could be used to predict tumor metastasis and prognosis in HCC patients. (PMID:21531764)
- PPAPDC1B and WHSC1L1 played a major role in regulating the survival of breast cancer, pancreatic adenocarcinoma and small-cell lung cancer-derived cell lines. (PMID:24051013)
- genetic variants at loci -1053 and +64 of the HTPAP promoter affect the expression of HTPAP, which might be a novel determinant and target for HCC prognosis (PMID:24603412)
Cross-species orthologs
11 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | plpp5 | ENSDARG00000057672 |
| mus_musculus | Plpp5 | ENSMUSG00000031570 |
| rattus_norvegicus | Plpp5 | ENSRNOG00000069017 |
| drosophila_melanogaster | wun | FBGN0016078 |
| drosophila_melanogaster | laza | FBGN0037163 |
| drosophila_melanogaster | CG11438 | FBGN0037164 |
| drosophila_melanogaster | CG11437 | FBGN0037165 |
| drosophila_melanogaster | CG11426 | FBGN0037166 |
| drosophila_melanogaster | CG11425 | FBGN0037167 |
| drosophila_melanogaster | CG12746 | FBGN0037341 |
| drosophila_melanogaster | wun2 | FBGN0041087 |
Paralogs (9): PLPP1 (ENSG00000067113), PLPPR2 (ENSG00000105520), PLPPR5 (ENSG00000117598), PLPPR4 (ENSG00000117600), PLPPR3 (ENSG00000129951), PLPP2 (ENSG00000141934), PLPPR1 (ENSG00000148123), PLPP3 (ENSG00000162407), PLPP4 (ENSG00000203805)
Protein
Protein identifiers
Phospholipid phosphatase 5 — Q8NEB5 (reviewed: Q8NEB5)
Alternative names: Phosphatidic acid phosphatase type 2 domain-containing protein 1B
All UniProt accessions (6): Q8NEB5, A0A140VK38, E9PNB1, H0YCK0, H0YCQ3, H0YDY2
UniProt curated annotations — full annotation on UniProt →
Function. Magnesium-independent phospholipid phosphatase with broad substrate specificity. Preferentially catalyzes the conversion of diacylglycerol pyrophosphate into phosphatidate but can also act on phosphatidate and lysophosphatidate. Phospholipid phosphatases are involved in both the synthesis of lipids and the generation or degradation of lipid-signaling molecules.
Subcellular location. Cell membrane.
Tissue specificity. Ubiquitous.
Activity regulation. Magnesium-independent phospholipid phosphatase. Inhibited by N-ethylmaleimide.
Pathway. Lipid metabolism; phospholipid metabolism.
Miscellaneous. May be a metastatic suppressor for hepatocellular carcinoma.
Similarity. Belongs to the PA-phosphatase related phosphoesterase family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8NEB5-1 | 1 | yes |
| Q8NEB5-2 | 2 | |
| Q8NEB5-3 | 3 | |
| Q8NEB5-4 | 4 |
RefSeq proteins (10): NP_001096029, NP_001096030, NP_001341381, NP_001341383, NP_001341385, NP_001341386, NP_001341387, NP_001341388, NP_001397849, NP_115872 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000326 | PAP2/HPO | Domain |
| IPR036938 | PAP2/HPO_sf | Homologous_superfamily |
| IPR043216 | PAP-like | Family |
Pfam: PF01569
Enzyme classification (BRENDA):
- EC 3.1.3.4 — phosphatidate phosphatase (BRENDA: 31 organisms, 190 substrates, 196 inhibitors, 44 Km, 3 kcat entries)
- EC 3.1.3.81 — diacylglycerol diphosphate phosphatase (BRENDA: 0 organisms, 0 substrates, 0 inhibitors, 0 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
10 substrates with measured Km, best-characterized 10. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| PHOSPHATIDIC ACID | 0.0054–1.2 | 17 |
| LYSOPHOSPHATIDATE | 0.046–0.179 | 3 |
| PHOSPHATIDATE | 0.284–0.369 | 3 |
| SPHINGOSINE-1-PHOSPHATE | 0.028–0.26 | 3 |
| CERAMIDE-1-PHOSPHATE | 0.022–0.052 | 2 |
| DIACYLGLYCEROL DIPHOSPHATE | 0.041–0.104 | 2 |
| LYSOPHOSPHATIDIC ACID | 0.295–0.58 | 2 |
| 1,2-DIACYL-SN-GLYCEROL-3-PHOSPHATE | 0.5954 | 1 |
| 2-(4,4-DIFLUORO-5,7-DIMETHYL-4-BORA-3A,4A-DIAZA- | 0.024 | 1 |
| DIOCTANOYL PHOSPHATIDIC ACID | 1.4 | 1 |
Catalyzed reactions (Rhea), 5 shown:
- a 1,2-diacyl-sn-glycero-3-phosphate + H2O = a 1,2-diacyl-sn-glycerol + phosphate (RHEA:27429)
- a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycero-3-phosphate + phosphate + H(+) (RHEA:27449)
- 1-(9Z-octadecenoyl)-sn-glycero-3-phosphate + H2O = 1-(9Z-octadecenoyl)-sn-glycerol + phosphate (RHEA:39835)
- 1,2-dioctanoyl-sn-glycero-3-diphosphate + H2O = 1,2-dioctanoyl-sn-glycero-3-phosphate + phosphate + H(+) (RHEA:42856)
- 1,2-dioctanoyl-sn-glycero-3-phosphate + H2O = 1,2-dioctanoyl-sn-glycerol + phosphate (RHEA:42860)
UniProt features (28 total): topological domain 7, transmembrane region 6, splice variant 5, region of interest 3, mutagenesis site 3, active site 2, chain 1, site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8NEB5-F1 | 91.84 | 0.83 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 152 (proton donors); 208 (nucleophile); 212 (stabilizes the active site histidine for nucleophilic attack)
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 115 | loss of phosphatase activity; when associated with a-152 and with a-208. |
| 152 | loss of phosphatase activity; when associated with a-115 and with a-208. |
| 208 | loss of phosphatase activity; when associated with a-115 and with a-152. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-2029485 | Role of phospholipids in phagocytosis |
MSigDB gene sets: 142 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_DN, GOBP_LIPID_MODIFICATION, GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, REACTOME_INNATE_IMMUNE_SYSTEM, ZHAN_MULTIPLE_MYELOMA_PR_DN, GOBP_PHOSPHOLIPID_DEPHOSPHORYLATION, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, CEBPB_01, CEBP_Q2, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5, GOBP_LIPID_METABOLIC_PROCESS, GOBP_DEPHOSPHORYLATION, CCCNNGGGAR_OLF1_01, WGGAATGY_TEF1_Q6, MASSARWEH_TAMOXIFEN_RESISTANCE_UP
GO Biological Process (3): phospholipid metabolic process (GO:0006644), phospholipid dephosphorylation (GO:0046839), lipid metabolic process (GO:0006629)
GO Molecular Function (4): diacylglycerol diphosphate phosphatase activity (GO:0000810), phosphatidate phosphatase activity (GO:0008195), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (3): cytoplasm (GO:0005737), plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Fcgamma receptor (FCGR) dependent phagocytosis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| lipid metabolic process | 1 |
| organophosphate metabolic process | 1 |
| dephosphorylation | 1 |
| lipid modification | 1 |
| primary metabolic process | 1 |
| pyrophosphatase activity | 1 |
| lipid phosphatase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| intracellular anatomical structure | 1 |
| membrane | 1 |
| cell periphery | 1 |
Protein interactions and networks
STRING
850 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PLPP5 | DDHD2 | O94830 | 621 |
| PLPP5 | LSM1 | O15116 | 590 |
| PLPP5 | NSD3 | Q9BZ95 | 583 |
| PLPP5 | ZNF703 | Q9H7S9 | 573 |
| PLPP5 | BAG4 | O95429 | 571 |
| PLPP5 | TM2D2 | Q9BX73 | 570 |
| PLPP5 | ERLIN2 | O94905 | 544 |
| PLPP5 | PLPP6 | Q8IY26 | 538 |
| PLPP5 | PLPP7 | Q8NBV4 | 515 |
| PLPP5 | PLPBP | O94903 | 514 |
| PLPP5 | RAB11FIP1 | Q6WKZ4 | 480 |
| PLPP5 | LETM2 | Q2VYF4 | 478 |
| PLPP5 | PLPP1 | O14494 | 447 |
| PLPP5 | ADAM32 | Q8TC27 | 447 |
| PLPP5 | LPIN1 | Q14693 | 442 |
IntAct
8 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CTXN3 | PLPP5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PLPP5 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| PLPP5 | psi-mi:“MI:0915”(physical association) | 0.000 | |
| glpA | PLPP5 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (4): PPAPDC1B (Synthetic Lethality), SLC29A2 (Two-hybrid), CTXN3 (Two-hybrid), PPAPDC1B (Affinity Capture-RNA)
ESM2 similar proteins: A4IFN5, A6NDV4, B1AWJ5, B1AZA5, B2LYG4, P59266, Q05B45, Q0VCJ8, Q3KRC4, Q3UMZ3, Q5EA70, Q5H8A4, Q5QJU3, Q5RBJ7, Q5U3C3, Q5VTY9, Q5ZMH6, Q6PHN7, Q6TCH4, Q6W5G4, Q6ZVK1, Q7Z7J7, Q865K8, Q86WK9, Q8BHH9, Q8BMT9, Q8BWB6, Q8C1E7, Q8K3J9, Q8N6M3, Q8NBT3, Q8NEB5, Q8NFT2, Q8VCW4, Q8VCY8, Q8VD53, Q8VDI9, Q96GM1, Q9BSA9, Q9BXJ8
Diamond homologs: O08564, O14494, O14495, O43688, O88956, P60588, P97544, Q04396, Q0VBU9, Q0WNG6, Q10022, Q2HJ61, Q3SZE3, Q3UMZ3, Q5VZY2, Q61469, Q6GQ62, Q6IQH6, Q86AF0, Q8K593, Q8LFD1, Q8NEB5, Q99JY8, Q9DAX2, Q9V576, Q9XI60, B0CM95, B0KWE9, B1MTH4, Q86YN1, Q9ZU49, Q29RT8, Q54PR7, Q6GM05, Q6WAY2, Q7Z2D5, Q8BFZ2, Q8TBJ4, B2KI79, Q32ZL2
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
1 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 1 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1643 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:38267265:A:AC | donor_gain | 1.0000 |
| 8:38267266:C:CC | donor_gain | 1.0000 |
| 8:38267314:T:TA | donor_gain | 1.0000 |
| 8:38268439:A:T | acceptor_gain | 1.0000 |
| 8:38268880:A:AC | donor_gain | 1.0000 |
| 8:38268881:C:CC | donor_gain | 1.0000 |
| 8:38268881:CAAA:C | donor_gain | 1.0000 |
| 8:38268908:C:CA | donor_gain | 1.0000 |
| 8:38269124:A:AC | donor_gain | 1.0000 |
| 8:38269125:C:CC | donor_gain | 1.0000 |
| 8:38266307:TGCAA:T | acceptor_gain | 0.9900 |
| 8:38266309:CAA:C | acceptor_gain | 0.9900 |
| 8:38266312:C:CC | acceptor_gain | 0.9900 |
| 8:38267319:ATCC:A | donor_gain | 0.9900 |
| 8:38267891:ACTT:A | donor_loss | 0.9900 |
| 8:38267892:CTTA:C | donor_loss | 0.9900 |
| 8:38267893:TTACC:T | donor_loss | 0.9900 |
| 8:38267894:T:TG | donor_loss | 0.9900 |
| 8:38268440:G:C | acceptor_gain | 0.9900 |
| 8:38268440:G:GC | acceptor_gain | 0.9900 |
| 8:38268871:T:A | donor_gain | 0.9900 |
| 8:38268905:A:AC | donor_gain | 0.9900 |
| 8:38268906:C:CC | donor_gain | 0.9900 |
| 8:38268989:CC:C | acceptor_gain | 0.9900 |
| 8:38268990:CC:C | acceptor_gain | 0.9900 |
| 8:38269123:TACAG:T | donor_loss | 0.9900 |
| 8:38269124:ACAG:A | donor_loss | 0.9900 |
| 8:38269125:CA:C | donor_gain | 0.9900 |
| 8:38267199:CTAG:C | donor_gain | 0.9800 |
| 8:38267392:C:CC | acceptor_gain | 0.9800 |
AlphaMissense
1720 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:38267953:G:C | S94R | 0.999 |
| 8:38267953:G:T | S94R | 0.999 |
| 8:38267955:T:G | S94R | 0.999 |
| 8:38266141:C:G | D212H | 0.997 |
| 8:38267289:G:C | S147R | 0.996 |
| 8:38267289:G:T | S147R | 0.996 |
| 8:38267291:T:G | S147R | 0.996 |
| 8:38264604:T:A | D212V | 0.995 |
| 8:38267286:G:C | F148L | 0.995 |
| 8:38267286:G:T | F148L | 0.995 |
| 8:38267288:A:G | F148L | 0.995 |
| 8:38267329:C:G | C134S | 0.995 |
| 8:38267330:A:T | C134S | 0.995 |
| 8:38267901:C:A | G112W | 0.995 |
| 8:38264580:C:T | G220E | 0.994 |
| 8:38267280:A:C | S150R | 0.994 |
| 8:38267280:A:T | S150R | 0.994 |
| 8:38267282:T:G | S150R | 0.994 |
| 8:38267292:C:A | K146N | 0.994 |
| 8:38267292:C:G | K146N | 0.994 |
| 8:38267296:C:G | R145P | 0.994 |
| 8:38267361:G:C | F123L | 0.994 |
| 8:38267361:G:T | F123L | 0.994 |
| 8:38267363:A:G | F123L | 0.994 |
| 8:38267365:C:G | C122S | 0.994 |
| 8:38267366:A:T | C122S | 0.994 |
| 8:38267368:C:G | R121P | 0.994 |
| 8:38264604:T:G | D212A | 0.993 |
| 8:38267900:C:T | G112E | 0.993 |
| 8:38267911:T:A | K108N | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000058844 (8:38270782 A>G), RS1000366334 (8:38270423 A>C), RS1000431558 (8:38270684 A>C,T), RS1000864322 (8:38264224 T>A,C,G), RS1000895238 (8:38264430 G>A,C,T), RS1001466543 (8:38269314 A>C,G,T), RS1001535321 (8:38267464 A>G), RS1001702332 (8:38265171 C>T), RS1001867440 (8:38265616 C>T), RS1001900268 (8:38265876 T>A,G), RS1002520255 (8:38268915 C>T), RS1003377775 (8:38266834 A>G), RS1004443495 (8:38269042 T>C), RS1004647101 (8:38266765 CAAAA>C,CA,CAAAAA), RS1004884739 (8:38270205 C>G)
Disease associations
OMIM: gene MIM:610626 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004521_242 | Autism spectrum disorder or schizophrenia | 4.000000e-09 |
| GCST006803_65 | Schizophrenia | 6.000000e-10 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
47 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression | 7 |
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 4 |
| Cyclosporine | increases expression | 4 |
| trichostatin A | affects cotreatment, decreases expression | 3 |
| Estradiol | decreases expression, increases expression | 2 |
| Tunicamycin | increases expression | 2 |
| Thapsigargin | increases expression | 2 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects expression | 1 |
| deoxynivalenol | decreases expression | 1 |
| decabromobiphenyl ether | affects expression | 1 |
| arsenite | increases methylation | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| cupric chloride | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| entinostat | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| belinostat | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| (4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II) | increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| NSC 689534 | affects binding, increases expression | 1 |
| NSC668394 | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Arsenic | increases expression, affects cotreatment, increases abundance | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.