PMP2
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Also known as MP2FABP8M-FABP
Summary
PMP2 (peripheral myelin protein 2, HGNC:9117) is a protein-coding gene on chromosome 8q21.13, encoding Myelin P2 protein (P02689). May play a role in lipid transport protein in Schwann cells.
The protein encoded by this gene localizes to myelin sheaths of the peripheral nervous system. The encoded protein can bind both the membrane layers of the sheaths and monomeric lipids, and is thought to provide stability to the sheath. A defect in this gene was shown to be a cause of dominant demyelinating CMT neuropathy.
Source: NCBI Gene 5375 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Charcot-Marie-Tooth disease, demyelinating, type 1G (Strong, GenCC) — +1 more curated relationship
- GWAS associations: 3
- Clinical variants (ClinVar): 137 total — 1 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 23
- Druggable target: yes
- MANE Select transcript:
NM_002677
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9117 |
| Approved symbol | PMP2 |
| Name | peripheral myelin protein 2 |
| Location | 8q21.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MP2, FABP8, M-FABP |
| Ensembl gene | ENSG00000147588 |
| Ensembl biotype | protein_coding |
| OMIM | 170715 |
| Entrez | 5375 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000256103, ENST00000519260, ENST00000910617
RefSeq mRNA: 2 — MANE Select: NM_002677
NM_001348381, NM_002677
CCDS: CCDS6229, CCDS87617
Canonical transcript exons
ENST00000256103 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000795004 | 81444817 | 81444989 |
| ENSE00001385195 | 81440326 | 81443448 |
| ENSE00002132278 | 81447314 | 81447439 |
| ENSE00003511804 | 81444500 | 81444601 |
Expression profiles
Bgee: expression breadth ubiquitous, 209 present calls, max score 99.91.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 21.0846 / max 4377.8524, expressed in 155 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 93751 | 20.4379 | 153 |
| 93746 | 0.2211 | 41 |
| 93747 | 0.1815 | 39 |
| 93744 | 0.1640 | 30 |
| 93745 | 0.0802 | 13 |
Top tissues by expression
274 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| olfactory bulb | UBERON:0002264 | 99.91 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 99.81 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 99.78 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 99.76 | gold quality |
| ventral tegmental area | UBERON:0002691 | 99.73 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 99.72 | gold quality |
| medulla oblongata | UBERON:0001896 | 99.71 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 99.63 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 99.58 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 99.57 | gold quality |
| globus pallidus | UBERON:0001875 | 99.54 | gold quality |
| medial globus pallidus | UBERON:0002477 | 99.51 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 99.39 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 99.34 | gold quality |
| pons | UBERON:0000988 | 99.26 | gold quality |
| cranial nerve II | UBERON:0000941 | 99.18 | gold quality |
| inferior olivary complex | UBERON:0002127 | 99.17 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 99.01 | gold quality |
| hypothalamus | UBERON:0001898 | 98.84 | gold quality |
| spinal cord | UBERON:0002240 | 98.83 | gold quality |
| midbrain | UBERON:0001891 | 98.70 | gold quality |
| amygdala | UBERON:0001876 | 98.63 | gold quality |
| substantia nigra | UBERON:0002038 | 98.61 | gold quality |
| putamen | UBERON:0001874 | 98.46 | gold quality |
| parietal lobe | UBERON:0001872 | 98.36 | gold quality |
| postcentral gyrus | UBERON:0002581 | 98.29 | gold quality |
| nucleus accumbens | UBERON:0001882 | 98.13 | gold quality |
| corpus callosum | UBERON:0002336 | 98.11 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 98.05 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 98.02 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-93593 | yes | 1509.20 |
| E-GEOD-84465 | yes | 1491.62 |
| E-MTAB-8894 | yes | 1231.64 |
| E-ANND-3 | yes | 3.76 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
124 targeting PMP2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-3912-5P | 99.95 | 66.11 | 925 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
| HSA-MIR-200A-3P | 99.94 | 72.68 | 2420 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-10523-5P | 99.91 | 69.22 | 2038 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-6499-3P | 99.90 | 66.38 | 1212 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
Literature-anchored findings (GeneRIF, showing 14)
- the structure and function of the P2 protein from human myelin, which is able to bind both monomeric lipids inside its cavity and membrane surfaces (PMID:20421974)
- The structure of human P2 refined at the ultrahigh resolution of 0.93 A allows detailed structural analyses, including the full organization of an internal hydrogen-bonding network. (PMID:24419389)
- A fully deuterated sample of myelin P2 protein was produced identifying the neutron crystal structure. (PMID:26527266)
- This report might expand the genetic and clinical features of Charcot-Marie-Tooth disease and a further mechanism study will enhance our understanding of PMP2-associated peripheral neuropathy. (PMID:26828946)
- Our genetic and clinical findings in these kindred demonstrate that dominant PMP2 mutations cause Charcot-Marie- Tooth disease type 1. (PMID:27009151)
- These findings demonstrate that altered biophysical properties and functional dynamics of P2 may cause myelin defects in Charcot-Marie-Tooth disease 1 patients. (PMID:28747762)
- SH3TC2, PMP2, and BSCL2 pathogenic variants might be rare in Chinese Charcot-Marie-Tooth (CMT) patients. (PMID:29336362)
- The structural characterization of the F57A mutant of P2 which shows changes in the portal region and helix alpha2 and an unfolded status upon lipid bilayer binding. Further results suggest a central role for Phe57 in regulating the opening of the portal region in human P2, and the F57A mutation disturbs dynamic cross-correlation networks in the portal region of P2. (PMID:29940944)
- High PMP2 expression is associated with melanoma cell invasion. (PMID:30506895)
- Peripheral myelin protein 2 - a novel cluster of mutations causing Charcot-Marie-Tooth neuropathy. (PMID:31412900)
- Cryo-EM, X-ray diffraction, and atomistic simulations reveal determinants for the formation of a supramolecular myelin-like proteolipid lattice. (PMID:32265298)
- Early onset demyelinating Charcot-Marie-Tooth disease caused by a novel in-frame isoleucine deletion in peripheral myelin protein 2. (PMID:32277537)
- Human myelin protein P2: from crystallography to time-lapse membrane imaging and neuropathy-associated variants. (PMID:34138518)
- PMP2/FABP8 induces PI(4,5)P2-dependent transbilayer reorganization of sphingomyelin in the plasma membrane. (PMID:34758297)
Cross-species orthologs
10 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | fabp4b | ENSDARG00000002311 |
| danio_rerio | fabp4a | ENSDARG00000017299 |
| danio_rerio | rbp7a | ENSDARG00000091906 |
| danio_rerio | rbp5 | ENSDARG00000101481 |
| danio_rerio | ENSDARG00000109259 | |
| mus_musculus | Pmp2 | ENSMUSG00000052468 |
| rattus_norvegicus | Pmp2 | ENSRNOG00000022707 |
| drosophila_melanogaster | fabp | FBGN0037913 |
| caenorhabditis_elegans | WBGENE00002259 | |
| caenorhabditis_elegans | WBGENE00002260 |
Paralogs (15): RBP2 (ENSG00000114113), RBP1 (ENSG00000114115), FABP3 (ENSG00000121769), RBP5 (ENSG00000139194), CRABP2 (ENSG00000143320), FABP2 (ENSG00000145384), RBP7 (ENSG00000162444), FABP1 (ENSG00000163586), FABP7 (ENSG00000164434), FABP5 (ENSG00000164687), CRABP1 (ENSG00000166426), FABP6 (ENSG00000170231), FABP4 (ENSG00000170323), FABP12 (ENSG00000197416), FABP9 (ENSG00000205186)
Protein
Protein identifiers
Myelin P2 protein — P02689 (reviewed: P02689)
Alternative names: Peripheral myelin protein 2
All UniProt accessions (2): P02689, E5RH45
UniProt curated annotations — full annotation on UniProt →
Function. May play a role in lipid transport protein in Schwann cells. May bind cholesterol.
Subunit / interactions. Monomer.
Subcellular location. Cytoplasm.
Disease relevance. Charcot-Marie-Tooth disease, demyelinating, type 1G (CMT1G) [MIM:618279] An autosomal dominant demyelinating form of Charcot-Marie-Tooth disease, a disorder of the peripheral nervous system, characterized by progressive weakness and atrophy, initially of the peroneal muscles and later of the distal muscles of the arms. Charcot-Marie-Tooth disease is classified in two main groups on the basis of electrophysiologic properties and histopathology: primary peripheral demyelinating neuropathies (designated CMT1 when they are dominantly inherited) and primary peripheral axonal neuropathies (CMT2). Demyelinating neuropathies are characterized by severely reduced nerve conduction velocities (less than 38 m/sec), segmental demyelination and remyelination with onion bulb formations on nerve biopsy, slowly progressive distal muscle atrophy and weakness, absent deep tendon reflexes, and hollow feet. CMT1G is characterized by distal muscle weakness and atrophy with onset in the first or second decade. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. Forms a beta-barrel structure that accommodates hydrophobic ligands in its interior.
Miscellaneous. P2 protein and myelin basic protein together constitute a major fraction of peripheral nervous system myelin protein.
Similarity. Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
RefSeq proteins (2): NP_001335310, NP_002668* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000463 | Fatty_acid-bd | Domain |
| IPR000566 | Lipocln_cytosolic_FA-bd_dom | Domain |
| IPR012674 | Calycin | Homologous_superfamily |
| IPR031256 | Myelin_P2 | Family |
| IPR031259 | ILBP | Family |
Pfam: PF00061
UniProt features (27 total): strand 10, binding site 4, sequence variant 3, sequence conflict 3, helix 3, initiator methionine 1, chain 1, modified residue 1, disulfide bond 1
Structure
Experimental structures (PDB)
30 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6S2M | X-RAY DIFFRACTION | 0.72 |
| 6S2S | X-RAY DIFFRACTION | 0.86 |
| 4BVM | X-RAY DIFFRACTION | 0.93 |
| 4A1Y | X-RAY DIFFRACTION | 1.2 |
| 6EW4 | X-RAY DIFFRACTION | 1.27 |
| 4D6A | X-RAY DIFFRACTION | 1.45 |
| 7NSR | X-RAY DIFFRACTION | 1.5 |
| 5N4P | X-RAY DIFFRACTION | 1.53 |
| 6EW2 | X-RAY DIFFRACTION | 1.59 |
| 5N4M | X-RAY DIFFRACTION | 1.59 |
| 6XU5 | X-RAY DIFFRACTION | 1.65 |
| 5N4Q | X-RAY DIFFRACTION | 1.72 |
| 6XVQ | X-RAY DIFFRACTION | 1.8 |
| 6XVS | X-RAY DIFFRACTION | 1.8 |
| 6XVY | X-RAY DIFFRACTION | 1.8 |
| 4A8Z | X-RAY DIFFRACTION | 1.8 |
| 2WUT | X-RAY DIFFRACTION | 1.85 |
| 3NR3 | X-RAY DIFFRACTION | 1.95 |
| 6EW5 | X-RAY DIFFRACTION | 1.95 |
| 6XVR | X-RAY DIFFRACTION | 2 |
| 7NRW | X-RAY DIFFRACTION | 2 |
| 7NTP | X-RAY DIFFRACTION | 2.1 |
| 4D6B | X-RAY DIFFRACTION | 2.12 |
| 4A1H | X-RAY DIFFRACTION | 2.2 |
| 6XUA | X-RAY DIFFRACTION | 2.3 |
| 6XUW | X-RAY DIFFRACTION | 2.31 |
| 6XU9 | X-RAY DIFFRACTION | 2.7 |
| 6XW9 | X-RAY DIFFRACTION | 2.9 |
| 6STS | X-RAY DIFFRACTION | 3 |
| 7O60 | X-RAY DIFFRACTION, NEUTRON DIFFRACTION | 2,2.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P02689-F1 | 96.49 | 0.95 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 107; 107; 127–129; 127–129
Post-translational modifications (1): 2
Disulfide bonds (1): 118–125
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 166 (showing top):
BROWNE_HCMV_INFECTION_4HR_UP, GOBP_ORGANIC_ACID_TRANSPORT, GOBP_ORGANIC_ANION_TRANSPORT, HOSHIDA_LIVER_CANCER_LATE_RECURRENCE_DN, NIKOLSKY_BREAST_CANCER_8Q12_Q22_AMPLICON, SCHLOSSER_SERUM_RESPONSE_DN, GOBP_MONOCARBOXYLIC_ACID_TRANSPORT, GOBP_MEMBRANE_ORGANIZATION, GOBP_LIPID_LOCALIZATION, GOBP_FATTY_ACID_TRANSPORT, GOCC_MYELIN_SHEATH, GOMF_STEROID_BINDING, GOMF_FATTY_ACID_BINDING, GOMF_ALCOHOL_BINDING, GOMF_STEROL_BINDING
GO Biological Process (2): fatty acid transport (GO:0015908), membrane organization (GO:0061024)
GO Molecular Function (4): fatty acid binding (GO:0005504), cholesterol binding (GO:0015485), protein binding (GO:0005515), lipid binding (GO:0008289)
GO Cellular Component (5): nucleus (GO:0005634), cytosol (GO:0005829), myelin sheath (GO:0043209), extracellular exosome (GO:0070062), cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| binding | 2 |
| lipid transport | 1 |
| monocarboxylic acid transport | 1 |
| cellular component organization | 1 |
| lipid binding | 1 |
| monocarboxylic acid binding | 1 |
| sterol binding | 1 |
| alcohol binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| cytoplasm | 1 |
| extracellular vesicle | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1358 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PMP2 | PRX | Q9BXM0 | 867 |
| PMP2 | GDAP1 | Q8TB36 | 834 |
| PMP2 | CDH1 | P12830 | 825 |
| PMP2 | HSCB | Q8IWL3 | 752 |
| PMP2 | CDH17 | Q12864 | 748 |
| PMP2 | RNMT | O43148 | 748 |
| PMP2 | CTNND1 | O60716 | 667 |
| PMP2 | FABP6 | P51161 | 622 |
| PMP2 | GJB1 | P08034 | 613 |
| PMP2 | PEX19 | P40855 | 603 |
| PMP2 | EGR2 | P11161 | 570 |
| PMP2 | GOT2 | P00505 | 542 |
| PMP2 | AJM1 | C9J069 | 542 |
| PMP2 | MBP | P02686 | 519 |
| PMP2 | NCMAP | Q5T1S8 | 511 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CCNDBP1 | PMP2 | psi-mi:“MI:0915”(physical association) | 0.670 |
| PMP2 | CCNDBP1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| APP | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| PRNP | MBP | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (9): CCNDBP1 (Two-hybrid), AKR1B1 (Co-fractionation), PMP2 (Co-fractionation), PMP2 (Co-fractionation), PMP2 (Co-fractionation), PMP2 (Co-fractionation), PMP2 (Co-fractionation), EZR (Cross-Linking-MS (XL-MS)), PMP2 (Cross-Linking-MS (XL-MS))
ESM2 similar proteins: A0A0K0MJ13, A0A0K0MJN3, A6YLM6, C4N147, O01812, O01814, O02772, O08716, O13008, O15540, O45035, O97788, P02689, P02690, P02691, P04117, P05413, P06768, P07483, P0C6G6, P10790, P11404, P15090, P24526, P29498, P41496, P41509, P48035, P50120, P50121, P51880, P55051, P55052, P55053, P70623, P80049, P86412, Q01469, Q02970, Q05423
Diamond homologs: A0A0K0MJ13, A0A0K0MJN3, A6NFH5, A6YLM6, A8MUU1, B7SUM8, C4N147, O01812, O01814, O02323, O02324, O02772, O08716, O13008, O15540, O42386, O45035, O76821, O97788, P02689, P02690, P02691, P02694, P02696, P04117, P05413, P06768, P07148, P07483, P09455, P0C6G6, P10790, P11404, P12710, P15090, P22935, P24526, P29373, P29498, P29762
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
137 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 2 |
| Uncertain significance | 76 |
| Likely benign | 40 |
| Benign | 10 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 599407 | NM_002677.5(PMP2):c.151A>C (p.Thr51Pro) | Pathogenic |
| 2573196 | NM_002677.5(PMP2):c.128T>G (p.Ile43Ser) | Likely pathogenic |
| 3236607 | NM_002677.5(PMP2):c.167G>T (p.Ser56Ile) | Likely pathogenic |
SpliceAI
358 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:81444987:CAC:C | acceptor_gain | 1.0000 |
| 8:81444990:C:CA | acceptor_loss | 1.0000 |
| 8:81447312:AC:A | donor_gain | 1.0000 |
| 8:81447313:CC:C | donor_gain | 1.0000 |
| 8:81444493:CTCTT:C | donor_loss | 0.9900 |
| 8:81444494:TCTTA:T | donor_loss | 0.9900 |
| 8:81444495:CTTA:C | donor_loss | 0.9900 |
| 8:81444496:TTAC:T | donor_loss | 0.9900 |
| 8:81444497:T:TG | donor_loss | 0.9900 |
| 8:81444498:A:AG | donor_loss | 0.9900 |
| 8:81444598:TGCT:T | acceptor_gain | 0.9900 |
| 8:81444600:CT:C | acceptor_gain | 0.9900 |
| 8:81444602:C:CC | acceptor_gain | 0.9900 |
| 8:81444811:GATTA:G | donor_loss | 0.9900 |
| 8:81444812:ATTAC:A | donor_loss | 0.9900 |
| 8:81444813:TTA:T | donor_loss | 0.9900 |
| 8:81444814:TACC:T | donor_loss | 0.9900 |
| 8:81444815:ACC:A | donor_loss | 0.9900 |
| 8:81444816:CCTT:C | donor_loss | 0.9900 |
| 8:81444985:CACAC:C | acceptor_gain | 0.9900 |
| 8:81444990:C:CC | acceptor_gain | 0.9900 |
| 8:81444991:T:C | acceptor_loss | 0.9900 |
| 8:81447309:CTTAC:C | donor_loss | 0.9900 |
| 8:81447310:TTA:T | donor_loss | 0.9900 |
| 8:81447311:TACC:T | donor_loss | 0.9900 |
| 8:81447312:A:AC | donor_gain | 0.9900 |
| 8:81447312:A:C | donor_loss | 0.9900 |
| 8:81447313:C:CC | donor_gain | 0.9900 |
| 8:81444498:A:AC | donor_gain | 0.9800 |
| 8:81444499:C:CC | donor_gain | 0.9800 |
AlphaMissense
868 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:81444850:A:C | F71L | 0.972 |
| 8:81444850:A:T | F71L | 0.972 |
| 8:81444852:A:G | F71L | 0.972 |
| 8:81444826:T:A | R79S | 0.971 |
| 8:81444826:T:G | R79S | 0.971 |
| 8:81444527:T:A | R107S | 0.964 |
| 8:81444527:T:G | R107S | 0.964 |
| 8:81444868:G:C | F65L | 0.964 |
| 8:81444868:G:T | F65L | 0.964 |
| 8:81444870:A:G | F65L | 0.964 |
| 8:81447336:A:C | F17L | 0.963 |
| 8:81447336:A:T | F17L | 0.963 |
| 8:81447338:A:G | F17L | 0.963 |
| 8:81447362:A:G | W9R | 0.963 |
| 8:81447362:A:T | W9R | 0.963 |
| 8:81443422:G:C | C125W | 0.962 |
| 8:81447360:C:A | W9C | 0.960 |
| 8:81447360:C:G | W9C | 0.960 |
| 8:81444905:C:G | R53P | 0.959 |
| 8:81443424:A:G | C125R | 0.952 |
| 8:81444599:G:C | S83R | 0.952 |
| 8:81444599:G:T | S83R | 0.952 |
| 8:81444601:T:G | S83R | 0.952 |
| 8:81444895:A:C | S56R | 0.944 |
| 8:81444895:A:T | S56R | 0.944 |
| 8:81444897:T:G | S56R | 0.944 |
| 8:81447324:C:A | M21I | 0.937 |
| 8:81447324:C:G | M21I | 0.937 |
| 8:81447324:C:T | M21I | 0.937 |
| 8:81444507:A:G | M114T | 0.930 |
dbSNP variants (sampled 300 via entrez): RS1000255873 (8:81444169 A>T), RS1000615100 (8:81447649 A>G,T), RS1000708430 (8:81441798 T>A), RS1001049779 (8:81447967 A>C), RS1001737722 (8:81448151 A>C), RS1001835698 (8:81442279 A>C), RS1001870317 (8:81447666 G>A,T), RS1002222112 (8:81448454 C>A,T), RS1002521411 (8:81440017 T>C), RS1002596332 (8:81440336 G>C), RS1003140304 (8:81446192 A>C,G), RS1003962254 (8:81443491 C>A,T), RS1004545635 (8:81440358 G>A), RS1004605905 (8:81441494 A>G), RS1004980554 (8:81440623 A>T)
Disease associations
OMIM: gene MIM:170715 | disease phenotypes: MIM:618279, MIM:118300
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Charcot-Marie-Tooth disease, demyelinating, type 1G | Strong | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Charcot-Marie-Tooth disease | Moderate | AD |
Mondo (3): peripheral neuropathy (MONDO:0005244), Charcot-Marie-Tooth disease, demyelinating, type 1G (MONDO:0033135), Charcot-Marie-Tooth disease type 1E (MONDO:0007311)
Orphanet (2): PMP2-related Charcot-Marie-Tooth disease type 1 (Orphanet:476394), Charcot-Marie-Tooth disease type 1E (Orphanet:90658)
HPO phenotypes
23 total (23 of 23 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0001288 | Gait disturbance |
| HP:0001761 | Pes cavus |
| HP:0001765 | Hammertoe |
| HP:0002359 | Frequent falls |
| HP:0002378 | Hand tremor |
| HP:0002460 | Distal muscle weakness |
| HP:0002936 | Distal sensory impairment |
| HP:0003376 | Steppage gait |
| HP:0003383 | Onion bulb formation |
| HP:0003438 | Absent Achilles reflex |
| HP:0003487 | Babinski sign |
| HP:0003621 | Juvenile onset |
| HP:0003677 | Slowly progressive |
| HP:0003693 | Distal amyotrophy |
| HP:0006844 | Absent patellar reflexes |
| HP:0006886 | Impaired distal vibration sensation |
| HP:0007328 | Impaired pain sensation |
| HP:0009053 | Distal lower limb muscle weakness |
| HP:0011096 | Peripheral demyelination |
| HP:0012548 | Fatty replacement of skeletal muscle |
| HP:0025708 | Early young adult onset |
| HP:0033383 | Decreased compound muscle action potential amplitude |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001941_13 | Ovarian cancer | 6.000000e-09 |
| GCST001941_17 | Ovarian cancer | 7.000000e-10 |
| GCST003542_123 | Night sleep phenotypes | 7.000000e-06 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C537986 | Charcot-Marie-Tooth disease, Type 1E (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3826864 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: other protein — Fatty acid-binding proteins
CTD chemical–gene interactions
17 total (human), top 17 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, decreases methylation | 4 |
| bisphenol A | decreases methylation, affects cotreatment | 1 |
| sodium arsenite | affects methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | increases expression | 1 |
| entinostat | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| theaflavin-3,3’-digallate | affects expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Etoposide | affects response to substance | 1 |
| Folic Acid | decreases expression | 1 |
| Lead | affects expression | 1 |
| Dronabinol | increases expression | 1 |
| Urethane | decreases expression | 1 |
| Asbestos, Serpentine | increases methylation | 1 |
| Lactic Acid | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3828899 | Binding | Displacement of 1,8-ANS from His6-tagged FABP8 (unknown origin) expressed in Escherichia coli BL21(DE3) cells at 25 uM by fluorescence assay relative to control | The discovery of novel and selective fatty acid binding protein 4 inhibitors by virtual screening and biological evaluation. — Bioorg Med Chem |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00380965 | PHASE4 | COMPLETED | Evaluation of the Efficacy of Cesamet™ for the Treatment of Pain in Patients With Chemotherapy-Induced Neuropathy |
| NCT00487981 | PHASE4 | TERMINATED | Spinal Cord Stimulation for Painful Diabetic Neuropathy |
| NCT00904202 | PHASE4 | COMPLETED | A Study Of Lidocaine Patch 5% Alone, Gabapentin Alone, And Lidocaine Patch 5% And Gabapentin In Combination For The Relief Of Pain In Patients With Diverse Peripheral Neuropathic Pain Conditions |
| NCT01192113 | PHASE4 | COMPLETED | Safety and Efficacy of Mecobalamin Injection in Peripheral Neuropathies Patients (Study JGAZSY091109) |
| NCT01373983 | PHASE4 | COMPLETED | Intrathecal Bolus Doses of Ziconotide |
| NCT01458015 | PHASE4 | TERMINATED | Tapentadol Versus Oxycodone - a Mechanism-based Treatment Approach in Neuropathic Pain |
| NCT02074267 | PHASE4 | COMPLETED | Clinical Study for Assessment of the Efficacy of Gabapentin (Carbatin and Neurontin) in Patients With Neuropathy Pain |
| NCT02372149 | PHASE4 | UNKNOWN | IVIg for Demyelination in Diabetes Mellitus |
| NCT02670161 | PHASE4 | ENROLLING_BY_INVITATION | Quality Improvement and Practice Based Research in Neurology Using the EMR |
| NCT07022938 | PHASE4 | COMPLETED | Nutritional Supplement for Treating Chemotherapy Induced Neuropathy |
| NCT07025005 | PHASE4 | RECRUITING | Fenofibrate Role in the Prophylaxis From Peripheral Neuropathy Induced by Bortezomib, Lenalidomide and Dexamethasone (VRd) Protocol in the Treatment of Patients With Multiple Myeloma (MM) |
| NCT00058071 | PHASE3 | COMPLETED | Amifostine in Treating Peripheral Neuropathy in Patients Who Have Received Chemotherapy for Cancer |
| NCT00125268 | PHASE3 | TERMINATED | Near Infrared Light for the Treatment of Painful Peripheral Neuropathy |
| NCT00195013 | PHASE3 | COMPLETED | Randomized Placebo-Controlled Trial of Glutamine for Breast Cancer Patients With Peripheral Neuropathy |
| NCT00232141 | PHASE3 | COMPLETED | Study of Pregabalin Versus Placebo in the Treatment of Nerve Pain Associated With HIV Neuropathy |
| NCT00264875 | PHASE3 | COMPLETED | Open Label Safety And Efficacy Study Of Pregabalin In Subjects With Nerve Pain Asociated With Human Immunodeficiency Virus (HIV) Neuropathy |
| NCT00369564 | PHASE3 | COMPLETED | Glutamic Acid in Reducing Nerve Damage Caused by Vincristine in Young Patients With Cancer |
| NCT00471445 | PHASE3 | COMPLETED | Topical Amitriptyline and Ketamine Cream in Treating Peripheral Neuropathy Caused by Chemotherapy in Cancer Patients |
| NCT00489411 | PHASE3 | COMPLETED | Duloxetine in Treating Peripheral Neuropathy Caused by Chemotherapy in Patients With Cancer |
| NCT00710554 | PHASE3 | COMPLETED | A Study of Sativex® for Pain Relief of Peripheral Neuropathic Pain, Associated With Allodynia |
| NCT00711880 | PHASE3 | COMPLETED | A Study of Sativex® for Relief of Peripheral Neuropathic Pain Associated With Allodynia. |
| NCT00713323 | PHASE3 | COMPLETED | A Study to Compare the Safety and Tolerability of Sativex® in Patients With Neuropathic Pain. |
| NCT00713817 | PHASE3 | COMPLETED | A Study to Determine the Maintenance of Effect After Long-term Treatment of Sativex® in Subjects With Neuropathic Pain |
| NCT00775645 | PHASE3 | COMPLETED | S0715: Acetyl-L-Carnitine in Preventing Neuropathy in Women With Stage I, II, or IIIA Breast Cancer Undergoing Chemo |
| NCT00872352 | PHASE3 | UNKNOWN | Evaluation of Bortezomib Induced Peripheral Neuropathy of Multiple Myeloma (MM) Patients |
| NCT00998738 | PHASE3 | TERMINATED | Calcium and Magnesium in Preventing Peripheral Neuropathy Caused by Ixabepilone in Patients With Breast Cancer |
| NCT01049217 | PHASE3 | TERMINATED | Pregabalin Versus Placebo In The Treatment Of Neuropathic Pain Associated With HIV Neuropathy |
| NCT01099449 | PHASE3 | COMPLETED | Calcium Gluconate and Magnesium Sulfate in Preventing Neurotoxicity in Patients With Colon Cancer or Rectal Cancer Receiving Oxaliplatin-Based Combination Chemotherapy |
| NCT01288937 | PHASE3 | TERMINATED | A Placebo Controlled, Randomized, Double Blind Trial of Milnacipran for the Treatment of Idiopathic Neuropathy Pain |
| NCT01492920 | PHASE3 | WITHDRAWN | Acetyl-L-Carnitine Hydrochloride in Preventing Peripheral Neuropathy in Patients With Recurrent Ovarian Epithelial Cancer, Primary Peritoneal Cavity Cancer, or Fallopian Tube Cancer Undergoing Chemotherapy |
| NCT01775449 | PHASE3 | COMPLETED | Prevention of Oxaliplatin-induced Neuropathic Pain by a Specific Diet |
| NCT02024191 | PHASE3 | UNKNOWN | The Role of Glutamine for Preventing Oxaliplatin-Induced Peripheral Neuropathy |
| NCT02217267 | PHASE3 | COMPLETED | Long Term Outcome After Serial Lidocaine Infusion in Peripheral Neuropathic Pain |
| NCT02294149 | PHASE3 | UNKNOWN | Vit D3 and Omega 3 in Chemo Induced Neuropathy |
| NCT02311907 | PHASE3 | COMPLETED | Glutathione in Preventing Peripheral Neuropathy Caused by Paclitaxel and Carboplatin in Patients With Ovarian Cancer, Fallopian Tube Cancer, and/or Primary Peritoneal Cancer |
| NCT06071936 | PHASE3 | UNKNOWN | Efficacy and Tolerability of AP707 in Patients With Chronic Pain Due to Traumatic or Post-operative Peripheral Neuropathy |
| NCT06071975 | PHASE3 | UNKNOWN | Long Term Efficacy and Tolerability of AP707 in Patients With Chronic Pain Due to Diabetic Polyneuropathy |
| NCT06071988 | PHASE3 | UNKNOWN | Long Term Efficacy and Tolerability of AP707 in Patients With Chronic Pain Due to Traumatic or Post-operative Peripheral Neuropathy |
| NCT06072573 | PHASE3 | UNKNOWN | Efficacy and Tolerability of AP707 in Patients With Chronic Pain Due to Diabetic Polyneuropathy |
| NCT07287592 | PHASE3 | NOT_YET_RECRUITING | Glutamine for the Prophylaxis of Vincristine-induced Neuropathy in Children and Adolescents With Cancer. |
Related Atlas pages
- Associated diseases: Charcot-Marie-Tooth disease, demyelinating, type 1G, Charcot-Marie-Tooth disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Charcot-Marie-Tooth disease type 1E, Charcot-Marie-Tooth disease, demyelinating, type 1G