PMP22
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Also known as HNPPGAS3Sp110HMSNIA
Summary
PMP22 (peripheral myelin protein 22, HGNC:9118) is a protein-coding gene on chromosome 17p12, encoding Peripheral myelin protein 22 (Q01453). Might be involved in growth regulation, and in myelinization in the peripheral nervous system. It is haploinsufficient (ClinGen: sufficient evidence).
This gene encodes an integral membrane protein that is a major component of myelin in the peripheral nervous system. Studies suggest two alternately used promoters drive tissue-specific expression. Various mutations of this gene are causes of Charcot-Marie-Tooth disease Type IA, Dejerine-Sottas syndrome, and hereditary neuropathy with liability to pressure palsies. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 5376 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Charcot-Marie-Tooth disease type 1A (Definitive, ClinGen) — +4 more curated relationships
- GWAS associations: 16
- Clinical variants (ClinVar): 941 total — 104 pathogenic, 37 likely-pathogenic
- Phenotypes (HPO): 130
- Druggable target: yes — 213 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_000304
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9118 |
| Approved symbol | PMP22 |
| Name | peripheral myelin protein 22 |
| Location | 17p12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HNPP, GAS3, Sp110, HMSNIA |
| Ensembl gene | ENSG00000109099 |
| Ensembl biotype | protein_coding |
| OMIM | 601097 |
| Entrez | 5376 |
Gene structure
Transcript identifiers
Ensembl transcripts: 44 — 36 protein_coding, 5 protein_coding_CDS_not_defined, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000312280, ENST00000395936, ENST00000395938, ENST00000426385, ENST00000431343, ENST00000471150, ENST00000494511, ENST00000580497, ENST00000580584, ENST00000612492, ENST00000643451, ENST00000644020, ENST00000646419, ENST00000674651, ENST00000674673, ENST00000674707, ENST00000674868, ENST00000674871, ENST00000674947, ENST00000675197, ENST00000675350, ENST00000675551, ENST00000675808, ENST00000675819, ENST00000675854, ENST00000675950, ENST00000676002, ENST00000676161, ENST00000676194, ENST00000676221, ENST00000676329, ENST00000901368, ENST00000901369, ENST00000901370, ENST00000901371, ENST00000901372, ENST00000901373, ENST00000901374, ENST00000953631, ENST00000953632, ENST00000953633, ENST00000953634, ENST00000953635, ENST00000953636
RefSeq mRNA: 6 — MANE Select: NM_000304
NM_000304, NM_001281455, NM_001281456, NM_001330143, NM_153321, NM_153322
CCDS: CCDS11168, CCDS82078
Canonical transcript exons
ENST00000312280 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000855493 | 15260650 | 15260761 |
| ENSE00001954487 | 15265154 | 15265326 |
| ENSE00003558191 | 15259094 | 15259193 |
| ENSE00003612568 | 15239471 | 15239611 |
| ENSE00003845828 | 15229779 | 15231080 |
Expression profiles
Bgee: expression breadth ubiquitous, 294 present calls, max score 99.97.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 77.4537 / max 1387.9851, expressed in 1668 samples.
FANTOM5 promoters (12 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 164680 | 42.8001 | 1504 |
| 164679 | 12.7843 | 1373 |
| 164677 | 11.5274 | 1616 |
| 164683 | 8.0446 | 594 |
| 164674 | 0.6209 | 241 |
| 164678 | 0.5906 | 330 |
| 164675 | 0.3601 | 171 |
| 164682 | 0.3501 | 188 |
| 164676 | 0.1692 | 71 |
| 164681 | 0.1050 | 45 |
Top tissues by expression
299 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| olfactory bulb | UBERON:0002264 | 99.97 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 99.94 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 99.92 | gold quality |
| nerve | UBERON:0001021 | 99.85 | gold quality |
| tibial nerve | UBERON:0001323 | 99.85 | gold quality |
| synovial joint | UBERON:0002217 | 99.48 | gold quality |
| skin of hip | UBERON:0001554 | 99.37 | gold quality |
| cranial nerve II | UBERON:0000941 | 99.33 | gold quality |
| calcaneal tendon | UBERON:0003701 | 99.33 | gold quality |
| inferior olivary complex | UBERON:0002127 | 99.27 | gold quality |
| cartilage tissue | UBERON:0002418 | 99.26 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 99.25 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 99.24 | gold quality |
| parietal pleura | UBERON:0002400 | 99.18 | gold quality |
| sural nerve | UBERON:0015488 | 99.10 | gold quality |
| left uterine tube | UBERON:0001303 | 99.09 | gold quality |
| pleura | UBERON:0000977 | 99.05 | gold quality |
| corpus callosum | UBERON:0002336 | 99.05 | gold quality |
| endocervix | UBERON:0000458 | 99.01 | gold quality |
| lower lobe of lung | UBERON:0008949 | 98.97 | gold quality |
| visceral pleura | UBERON:0002401 | 98.95 | gold quality |
| endometrium epithelium | UBERON:0004811 | 98.92 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 98.90 | gold quality |
| mucosa of stomach | UBERON:0001199 | 98.89 | gold quality |
| vena cava | UBERON:0004087 | 98.89 | gold quality |
| spinal cord | UBERON:0002240 | 98.88 | gold quality |
| upper lobe of lung | UBERON:0008948 | 98.82 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 98.81 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 98.75 | gold quality |
| adipose tissue | UBERON:0001013 | 98.73 | gold quality |
Single-cell (SCXA)
Detected in 25 experiment(s), a significant marker in 25.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-124263 | yes | 3501.48 |
| E-CURD-126 | yes | 3360.62 |
| E-HCAD-11 | yes | 3284.50 |
| E-MTAB-8142 | yes | 2538.69 |
| E-HCAD-24 | yes | 1344.14 |
| E-HCAD-5 | yes | 778.94 |
| E-MTAB-9388 | yes | 517.44 |
| E-HCAD-1 | yes | 96.95 |
| E-GEOD-125970 | yes | 71.95 |
| E-MTAB-6701 | yes | 69.69 |
| E-MTAB-8410 | yes | 63.50 |
| E-GEOD-134144 | yes | 38.43 |
| E-HCAD-10 | yes | 35.48 |
| E-GEOD-135922 | yes | 23.01 |
| E-MTAB-10287 | yes | 19.68 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
129 targeting PMP22, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6740-5P | 100.00 | 65.64 | 932 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-4487 | 99.96 | 64.58 | 1252 |
| HSA-MIR-767-5P | 99.95 | 70.85 | 993 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-4648 | 99.91 | 67.00 | 710 |
| HSA-MIR-5682 | 99.89 | 72.56 | 1005 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-659-3P | 99.85 | 70.69 | 1620 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-1321 | 99.84 | 65.30 | 1811 |
| HSA-MIR-4739 | 99.84 | 65.25 | 1832 |
| HSA-MIR-4756-5P | 99.84 | 64.98 | 1809 |
| HSA-MIR-548AZ-5P | 99.83 | 69.94 | 3230 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- both functions of PMP22, in regulating Schwann cell differentiation and contributing to peripheral myelin compaction, are affected by its overexpression. (PMID:11456309)
- deletion spanning the 3’ region of the PMP22 gene, causing only a partial deletion of one copy of the gene. (PMID:12207933)
- SSCP analysis of this gene in Croatian patients (PMID:12211648)
- Conformation of the transmembrane domains in peripheral myelin protein 22 is studied using solution-phase synthesis. (PMID:12823620)
- Sequence deletion in the PMP22 gene was noted in a case of hereditary neuropathy with liability to pressure palsy complicated by hypoglossal neuropathy (PMID:14581692)
- distinct mutations in PMP22 gene is found in brachial palsy. (PMID:15083696)
- we report a family carrying a novel mutation in the PMP22 gene (c. 327C>A), which results in a premature stop codon (Cys109stop). The family members who carry this mutation have a Charcot-Marie-Tooth type 1 variable phenotype. (PMID:15099590)
- we report a large family showing characteristic phenotypes of Charcot-Marie-Tooth type 1A along with deafness in an autosomal dominant fashion. We detected a sequence variation (c.68C>G) leading to a T23R missense mutation in PMP22. (PMID:15099592)
- a PMP22 mutation (Ser22Phe) may play a role in hereditary neuropathy (PMID:15205993)
- PMP22 and P0 are involved in both trans-homophilic and trans-heterophilic interactions. Disease-related point mutations of P0 resulted in a decreased adhesion capability correlating with the severity of the respective disease phenotype. (PMID:15555916)
- We report the clinical and electrophysiological findings observed in a kindred with three members affected by HNPP due to a deletion containing exons 4 and 5 of the PMP22 gene. (PMID:15564036)
- At postnatal day 4 Pmp22 transgenic mice show strongly reduced expression of genes important for cholesterol synthesis. (PMID:15755691)
- The differences in sensorineural hearing impairment may be explained by the differences in PMP22 expression. (PMID:15891642)
- A family with a novel frameshift mutation in the PMP22 gene (c.433_434insC) causing a phenotype of hereditary neuropathy. (PMID:15955700)
- point mutation in the PMP22 gene is a rare cause of hereditary neuropathy. (PMID:16199442)
- The PMP22 duplication rate in Chinese patients with CMT is 31.9%(36/113). PMP22 deletion is the common cause of hereditary neuropathy with liability to pressure palsies. (PMID:16215943)
- As a result of missorting and inefficient proteasomal degradation, the aggregation of PMP22 and recruitment of autophagosomes and lysosomes are key factors in the subcellular pathogenesis of CMT1A neuropathies. (PMID:16326107)
- PMP22 forms a complex with alpha6beta4 integrin in cultured colonic adenocarcinoma cells. (PMID:16436605)
- T118M PMP22 mutation causes partial loss of function and hereditary neuropathy with liability to pressure palsies. (PMID:16437560)
- CMT represents a heterogeneous group of disorders at the molecular level. Testing for the CMT1A duplication (i.e., duplication of PMP22) alone yields an accurate molecular diagnosis in approximately half of all patients. (PMID:16481890)
- determined the N-terminal part of Siva as the binding region for CD27; the peroxisomal membrane protein PMP22 is a new interaction partner of Siva and may be involved in the host response against CVB3. (PMID:16683188)
- The phenotypic expression is identical in patients with Leu7fs mutation and patients with HNPP caused by chromosome 17p11.2 deletion. Reduction of PMP22 is sufficient to cause the full HNPP phenotype. (PMID:17620487)
- This study investigated a 17-years-old girl who led to our detecting a novel mutation in PMP22 gene. The mutation was also detected in her father and corresponded to a deletion of one tymidine at position 11 in exon2 (c.11delT). (PMID:17707409)
- Results show PMP22 is highly helical, shows evidence of stable tertiary structure, and exhibits a strong tendency to dimerize. (PMID:17824619)
- The rate of duplication was 92.3’ (36/39) in the patients whereas it was zero in the control samples. (PMID:17917930)
- Our findings suggest that in a subgroup of CMT1A patients there is an increase in clinical severity over generations. The mechanism responsible for this observation remains unknown. Our findings should be validated on a larger cohort of CMT1A families. (PMID:18438698)
- study reports a novel point mutation in a family affected with Roussy-Levy syndrome (PMID:18592125)
- novel 227delG mutation of PMP22 gives a mild form of hereditary neuropathy with liability to pressure palsy with atypical clinical and electrophysiological findings. (PMID:18642376)
- Deletions in both PMP22 alleles caused Charcot-Marie-Tooth disease with a Dejerine-Sottas disease phenotype. (PMID:18698610)
- The results lead to the hypothesis that ER quality control recognizes the G150D and L16P mutant forms of PMP22 as defective through mechanisms closely related to their conformational instability and/or slow folding. (PMID:18795802)
- Data show that the CMT1Adup, GJB1, MPZ and PMP22 mutation frequencies were in the range of those described in other CMT patient collectives with different ethnical backgrounds. (PMID:19259128)
- Data show that Med25 is coordinately expressed with Pmp22 gene dosage and expression in transgenic mice and rats, and suggest a potential role of this protein in the molecular etiology of Charcot-Marie-Tooth disease. (PMID:19290556)
- The extra copy of PMP22 in Charcot-Marie-Tooth 1A results in disruption of the tightly regulated expression of PMP22, thus, variability of PMP22 levels, rather than absolute level of PMP22, may play an important role in the pathogenesis of CMT1A. (PMID:19447823)
- Loss of motoneurons (MNs) in spinal cords from transgenic mice over-expressing Pmp22 (Pmp22(tg)) is demonstrated, while mice lacking Pmp22 [Pmp22(ko) knockouts] exhibit normal MN numbers at the age (60 days) of Charcot-Marie-Tooth disease symptoms. (PMID:19493167)
- PMP22 has a role in determining phenotype of Charcot-Marie-Tooth disease [case report] (PMID:19705173)
- study characterized a patient manifesting with an atypical form of hereditary neuropathy with liability to pressure palsies caused by a new Thr99fsX110 mutation in the PMP22 gene (PMID:19830275)
- Copy number variation upstream of PMP22 is associated with Charcot-Marie-Tooth disease. (PMID:19888301)
- the type of PMP22 point mutations, the nature of the amino acid change, and the position of the altered amino acid play a role in determining the severity of the phenotype (PMID:19909487)
- PMP22 gene duplications and deletions are associated with Charcot-Marie-Tooth disease type 1A and hereditary neuro pathy with liability to pressure palsies. (PMID:19930872)
- The role of monocyte chemoattractant protein-1 (MCP-1/CCL2) as a regulator of nerve macrophages and neural damage including axonopathy and demyelination, was investigated. (PMID:20093502)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | pmp22b | ENSDARG00000060457 |
| danio_rerio | pmp22a | ENSDARG00000105223 |
| mus_musculus | Pmp22 | ENSMUSG00000018217 |
| rattus_norvegicus | Pmp22 | ENSRNOG00000003338 |
Paralogs (10): LIM2 (ENSG00000105370), NKG7 (ENSG00000105374), GSG1 (ENSG00000111305), EMP1 (ENSG00000134531), EMP3 (ENSG00000142227), CLDND2 (ENSG00000160318), GSG1L (ENSG00000169181), TMEM202 (ENSG00000187806), EMP2 (ENSG00000213853), GSG1L2 (ENSG00000214978)
Protein
Protein identifiers
Peripheral myelin protein 22 — Q01453 (reviewed: Q01453)
Alternative names: Growth arrest-specific protein 3
All UniProt accessions (10): Q01453, A0A2R8Y5L5, A0A6Q8PF08, A0A6Q8PF92, A0A6Q8PFD5, A0A6Q8PFS0, A8MU75, J3KQW0, J3KT36, Q6FH25
UniProt curated annotations — full annotation on UniProt →
Function. Might be involved in growth regulation, and in myelinization in the peripheral nervous system.
Subcellular location. Cell membrane.
Post-translational modifications. Ubiquitinated by the DCX(DCAF13) E3 ubiquitin ligase complex, leading to its degradation.
Disease relevance. Charcot-Marie-Tooth disease, demyelinating, type 1A (CMT1A) [MIM:118220] A dominant demyelinating form of Charcot-Marie-Tooth disease, a disorder of the peripheral nervous system, characterized by progressive weakness and atrophy, initially of the peroneal muscles and later of the distal muscles of the arms. Charcot-Marie-Tooth disease is classified in two main groups on the basis of electrophysiologic properties and histopathology: primary peripheral demyelinating neuropathies (designated CMT1 when they are dominantly inherited) and primary peripheral axonal neuropathies (CMT2). Demyelinating neuropathies are characterized by severely reduced nerve conduction velocities (less than 38 m/sec), segmental demyelination and remyelination with onion bulb formations on nerve biopsy, slowly progressive distal muscle atrophy and weakness, absent deep tendon reflexes, and hollow feet. The disease is caused by variants affecting the gene represented in this entry. Dejerine-Sottas syndrome (DSS) [MIM:145900] A severe degenerating neuropathy of the demyelinating Charcot-Marie-Tooth disease category, with onset by age 2 years. Characterized by motor and sensory neuropathy with very slow nerve conduction velocities, increased cerebrospinal fluid protein concentrations, hypertrophic nerve changes, delayed age of walking as well as areflexia. There are both autosomal dominant and autosomal recessive forms of Dejerine-Sottas syndrome. The disease is caused by variants affecting the gene represented in this entry. Hereditary neuropathy with liability to pressure palsies (HNPP) [MIM:162500] A neurologic disorder characterized by transient episodes of decreased perception or peripheral nerve palsies after slight traction, compression or minor traumas. The disease is caused by variants affecting the gene represented in this entry. Charcot-Marie-Tooth disease, demyelinating, type 1E (CMT1E) [MIM:118300] An autosomal dominant form of Charcot-Marie-Tooth disease characterized by the association of sensorineural hearing loss with peripheral demyelinating neuropathy. The disease is caused by variants affecting the gene represented in this entry. Inflammatory demyelinating polyneuropathy (IDP) [MIM:139393] Putative autoimmune disorder presenting in an acute (AIDP) or chronic form (CIDP). The acute form is also known as Guillain-Barre syndrome. The disease may be caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the PMP-22/EMP/MP20 family.
RefSeq proteins (6): NP_000295, NP_001268384, NP_001268385, NP_001317072, NP_696996, NP_696997 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003936 | PMP22 | Family |
| IPR004031 | PMP22/EMP/MP20/Claudin | Family |
| IPR004032 | PMP22_EMP_MP20 | Family |
| IPR050579 | PMP-22/EMP/MP20-like | Family |
Pfam: PF00822
UniProt features (49 total): sequence variant 38, topological domain 5, transmembrane region 4, chain 1, glycosylation site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q01453-F1 | 89.87 | 0.63 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (1): 41
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-9619665 | EGR2 and SOX10-mediated initiation of Schwann cell myelination |
MSigDB gene sets: 966 (showing top):
WAMUNYOKOLI_OVARIAN_CANCER_LMP_DN, TGGTGCT_MIR29A_MIR29B_MIR29C, chr17p12, BENPORATH_ES_WITH_H3K27ME3, CHIARADONNA_NEOPLASTIC_TRANSFORMATION_KRAS_DN, YAGI_AML_WITH_INV_16_TRANSLOCATION, KAAB_FAILED_HEART_ATRIUM_DN, MODULE_45, GOZGIT_ESR1_TARGETS_DN, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GRAESSMANN_RESPONSE_TO_MC_AND_SERUM_DEPRIVATION_UP, ASTON_MAJOR_DEPRESSIVE_DISORDER_DN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, SCHLESINGER_METHYLATED_DE_NOVO_IN_CANCER
GO Biological Process (10): apoptotic process (GO:0006915), chemical synaptic transmission (GO:0007268), peripheral nervous system development (GO:0007422), negative regulation of cell population proliferation (GO:0008285), negative regulation of neuron projection development (GO:0010977), cell differentiation (GO:0030154), bleb assembly (GO:0032060), myelin assembly (GO:0032288), nervous system development (GO:0007399), myelination (GO:0042552)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (5): plasma membrane (GO:0005886), bicellular tight junction (GO:0005923), compact myelin (GO:0043218), synapse (GO:0045202), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Nervous system development | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| system development | 2 |
| cellular anatomical structure | 2 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| anterograde trans-synaptic signaling | 1 |
| nervous system development | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| regulation of neuron projection development | 1 |
| neuron projection development | 1 |
| negative regulation of cell projection organization | 1 |
| cellular developmental process | 1 |
| plasma membrane bounded cell projection assembly | 1 |
| cellular component assembly involved in morphogenesis | 1 |
| myelination | 1 |
| axon ensheathment | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| apical junction complex | 1 |
| tight junction | 1 |
| myelin sheath | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
382 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PMP22 | RNMT | O43148 | 971 |
| PMP22 | MPZL1 | O95297 | 955 |
| PMP22 | GJB1 | P08034 | 941 |
| PMP22 | CLDN11 | O75508 | 854 |
| PMP22 | PRX | Q9BXM0 | 784 |
| PMP22 | EGR2 | P11161 | 780 |
| PMP22 | SH3TC2 | Q8TF17 | 725 |
| PMP22 | MTMR2 | Q13614 | 723 |
| PMP22 | RNGTT | O60942 | 718 |
| PMP22 | LIM2 | P55344 | 639 |
| PMP22 | NEFL | P07196 | 597 |
| PMP22 | GAS2 | O43903 | 594 |
| PMP22 | PLP1 | P04400 | 591 |
| PMP22 | MBP | P02686 | 552 |
| PMP22 | MAG | P20916 | 511 |
IntAct
190 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PMP22 | SMIM3 | psi-mi:“MI:0915”(physical association) | 0.810 |
| KLRC1 | PMP22 | psi-mi:“MI:0915”(physical association) | 0.720 |
| PMP22 | CREB3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PMP22 | SGCB | psi-mi:“MI:0915”(physical association) | 0.560 |
| PMP22 | ERVFRD-1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PMP22 | AQP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PMP22 | TMEM80 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PMP22 | CLDN5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PMP22 | KCNN4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PMP22 | CD3G | psi-mi:“MI:0915”(physical association) | 0.560 |
| PMP22 | TMEM14B | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (75): PMP22 (Two-hybrid), SMIM3 (Two-hybrid), SYVN1 (Affinity Capture-Western), AMFR (Affinity Capture-Western), PMP22 (Affinity Capture-Western), RER1 (Affinity Capture-Western), CANX (Affinity Capture-Western), CREB3 (Two-hybrid), SMIM3 (Two-hybrid), PMP22 (Two-hybrid), PMP22 (Two-hybrid), PMP22 (Two-hybrid), PMP22 (Two-hybrid), PMP22 (Two-hybrid), PMP22 (Two-hybrid)
ESM2 similar proteins: B0BM39, B3VSC2, B5X3I6, F7BWT7, O14494, O14817, O35566, O42602, O42603, O43688, O60636, O62772, O75954, O88956, O95857, O95858, P35353, P47866, P48509, P60588, Q01453, Q06AA5, Q13324, Q3SYV5, Q3ZBV0, Q4L208, Q5RAP3, Q5RAZ3, Q5ZJ75, Q60748, Q6DCQ3, Q6GMK6, Q6WL85, Q86UF1, Q8BJU2, Q8K593, Q8R3S2, Q8R4D1, Q90812, Q91ZH7
Diamond homologs: A5A6N6, F1QIK8, O35912, O88662, P16646, P25094, P47801, P54848, P54849, P54850, P54851, P54852, Q01453, Q2NKU9, Q58DR6, Q5RAZ3, Q5RCY3, Q66HH2, Q6WL85, Q9QYW5, Q9TQZ3, P20274, Q2KIY2
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PMP22 | “up-regulates quantity by expression” | ITGA6 | “transcriptional regulation” |
| PMP22 | “up-regulates activity” | MPZ | binding |
| ITGA6 | “up-regulates activity” | PMP22 | binding |
| ITGB4 | “up-regulates activity” | PMP22 | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
941 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 104 |
| Likely pathogenic | 37 |
| Uncertain significance | 406 |
| Likely benign | 245 |
| Benign | 39 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1069349 | NC_000002.11:g.(?231033820)(231086456_?)del | Pathogenic |
| 1070719 | NC_000017.10:g.(?15132094)(15169674_?)dup | Pathogenic |
| 1070720 | NC_000017.10:g.(?15134214)(15164064_?)dup | Pathogenic |
| 1070721 | NC_000017.10:g.(?15134234)(15164044_?)dup | Pathogenic |
| 1072721 | NM_000304.4(PMP22):c.236C>T (p.Ser79Phe) | Pathogenic |
| 1074659 | NC_000017.10:g.(?15133097)(15164054_?)del | Pathogenic |
| 1074660 | NC_000017.10:g.(?15134234)(15164044_?)del | Pathogenic |
| 1074661 | NC_000017.10:g.(?15162401)(15162520_?)del | Pathogenic |
| 1120168 | Single allele | Pathogenic |
| 1120169 | Single allele | Pathogenic |
| 127097 | GRCh38/hg20 17p12(chr17:14170534-15591587)x4 | Pathogenic |
| 1390383 | NM_080424.4(SP110):c.436C>T (p.Gln146Ter) | Pathogenic |
| 1397854 | NM_000304.4(PMP22):c.181del (p.Trp61fs) | Pathogenic |
| 1402707 | NC_000017.10:g.(?15133084)(15134407_?)del | Pathogenic |
| 1402717 | NC_000017.10:g.(?15142778)(15142938_?)del | Pathogenic |
| 1451662 | NM_080424.4(SP110):c.1933del (p.Leu645fs) | Pathogenic |
| 1452083 | NM_000304.4(PMP22):c.117del (p.Trp39fs) | Pathogenic |
| 1453125 | NM_000304.4(PMP22):c.215C>A (p.Ser72Ter) | Pathogenic |
| 1454853 | NC_000017.10:g.(?15162401)(15162523_?)del | Pathogenic |
| 1454856 | NC_000017.10:g.(?15133084)(15164054_?)dup | Pathogenic |
| 1458064 | NM_080424.4(SP110):c.1775_1778del (p.Val591_Ser592insTer) | Pathogenic |
| 1458399 | NM_000304.4(PMP22):c.319+1G>T | Pathogenic |
| 1459288 | NM_000304.4(PMP22):c.78+1G>C | Pathogenic |
| 1459615 | NC_000017.10:g.(?15133097)(15164054_?)dup | Pathogenic |
| 1459892 | NC_000017.10:g.(?15133084)(15164054_?)del | Pathogenic |
| 1460016 | NC_000002.11:g.(?231042234)(231042416_?)del | Pathogenic |
| 1460409 | NC_000017.10:g.(?15134214)(15164064_?)del | Pathogenic |
| 1912459 | NM_080424.4(SP110):c.886del (p.Ser296fs) | Pathogenic |
| 2024159 | NM_080424.4(SP110):c.463A>T (p.Arg155Ter) | Pathogenic |
| 2044604 | NM_000304.4(PMP22):c.36C>G (p.His12Gln) | Pathogenic |
SpliceAI
900 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:15231076:CAGAC:C | acceptor_gain | 1.0000 |
| 17:15231078:GAC:G | acceptor_gain | 1.0000 |
| 17:15231078:GACCT:G | acceptor_loss | 1.0000 |
| 17:15231080:CCT:C | acceptor_loss | 1.0000 |
| 17:15231081:C:A | acceptor_loss | 1.0000 |
| 17:15231081:C:CC | acceptor_gain | 1.0000 |
| 17:15231082:T:A | acceptor_loss | 1.0000 |
| 17:15239470:CCAG:C | donor_gain | 1.0000 |
| 17:15239607:CCATT:C | acceptor_gain | 1.0000 |
| 17:15239608:CATT:C | acceptor_gain | 1.0000 |
| 17:15239608:CATTC:C | acceptor_gain | 1.0000 |
| 17:15239610:TT:T | acceptor_gain | 1.0000 |
| 17:15239612:C:CC | acceptor_gain | 1.0000 |
| 17:15260648:A:AC | donor_gain | 1.0000 |
| 17:15260649:C:CC | donor_gain | 1.0000 |
| 17:15260649:CG:C | donor_gain | 1.0000 |
| 17:15260649:CGCTG:C | donor_gain | 1.0000 |
| 17:15262427:A:AC | donor_gain | 1.0000 |
| 17:15262427:ACAG:A | donor_gain | 1.0000 |
| 17:15262427:ACAGC:A | donor_gain | 1.0000 |
| 17:15262428:C:CC | donor_gain | 1.0000 |
| 17:15262428:CA:C | donor_gain | 1.0000 |
| 17:15262428:CAG:C | donor_gain | 1.0000 |
| 17:15262428:CAGC:C | donor_gain | 1.0000 |
| 17:15262428:CAGCC:C | donor_gain | 1.0000 |
| 17:15239464:AACTT:A | donor_loss | 0.9900 |
| 17:15239465:ACTTA:A | donor_loss | 0.9900 |
| 17:15239466:CTTAC:C | donor_loss | 0.9900 |
| 17:15239468:TA:T | donor_loss | 0.9900 |
| 17:15239469:A:AC | donor_gain | 0.9900 |
AlphaMissense
1030 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:15259155:C:A | W39C | 0.999 |
| 17:15259155:C:G | W39C | 0.999 |
| 17:15230952:C:G | G150R | 0.998 |
| 17:15230953:G:C | S149R | 0.998 |
| 17:15230953:G:T | S149R | 0.998 |
| 17:15230955:T:G | S149R | 0.998 |
| 17:15230982:A:G | W140R | 0.998 |
| 17:15230982:A:T | W140R | 0.998 |
| 17:15239502:A:C | F96L | 0.998 |
| 17:15239502:A:T | F96L | 0.998 |
| 17:15239504:A:G | F96L | 0.998 |
| 17:15239562:G:C | S76R | 0.998 |
| 17:15239562:G:T | S76R | 0.998 |
| 17:15239564:T:G | S76R | 0.998 |
| 17:15239575:G:C | S72W | 0.998 |
| 17:15259157:A:G | W39R | 0.998 |
| 17:15259157:A:T | W39R | 0.998 |
| 17:15259190:A:G | W28R | 0.998 |
| 17:15259190:A:T | W28R | 0.998 |
| 17:15230951:C:T | G150D | 0.997 |
| 17:15239491:C:T | G100E | 0.997 |
| 17:15239503:A:G | F96S | 0.997 |
| 17:15259188:C:A | W28C | 0.997 |
| 17:15259188:C:G | W28C | 0.997 |
| 17:15230926:T:A | K158N | 0.996 |
| 17:15230926:T:G | K158N | 0.996 |
| 17:15239492:C:G | G100R | 0.996 |
| 17:15239492:C:T | G100R | 0.996 |
| 17:15239503:A:C | F96C | 0.995 |
| 17:15239530:A:G | L87P | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000004006 (17:15233965 G>A), RS1000153375 (17:15262269 T>A,C), RS1000183579 (17:15229468 T>C), RS1000348387 (17:15264101 G>A), RS1000362801 (17:15253547 C>T), RS1000389686 (17:15257441 G>A), RS1000682740 (17:15245160 A>G,T), RS1000701735 (17:15251620 T>C), RS1000734846 (17:15244927 G>A), RS1000941524 (17:15238750 G>A,T), RS1001008427 (17:15232526 C>T), RS1001387714 (17:15262228 A>G), RS1001399548 (17:15252943 C>A,G,T), RS1001470763 (17:15234975 C>A,G), RS1001473392 (17:15233358 G>C,T)
Disease associations
OMIM: gene MIM:601097 | disease phenotypes: MIM:235550, MIM:162500, MIM:118220, MIM:145900, MIM:118300, MIM:139393, MIM:180800, MIM:607684
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Charcot-Marie-Tooth disease type 1A | Definitive | Autosomal dominant |
| hereditary neuropathy with liability to pressure palsies | Definitive | Autosomal dominant |
| hepatic veno-occlusive disease-immunodeficiency syndrome | Strong | Autosomal recessive |
| Charcot-Marie-Tooth disease type 1E | Strong | Autosomal dominant |
| Charcot-Marie-Tooth disease type 3 | Strong | Autosomal dominant |
ClinGen Gene-Disease Validity (3)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Charcot-Marie-Tooth disease type 1A | Definitive | AD |
| hereditary neuropathy with liability to pressure palsies | Definitive | AD |
| hepatic veno-occlusive disease-immunodeficiency syndrome | Definitive | AR |
Mondo (12): hepatic veno-occlusive disease-immunodeficiency syndrome (MONDO:0009338), Charcot-Marie-Tooth disease type 1 (MONDO:0019011), hereditary neuropathy with liability to pressure palsies (MONDO:0008087), peripheral neuropathy (MONDO:0005244), Charcot-Marie-Tooth disease type 1A (MONDO:0007309), Charcot-Marie-Tooth disease type 3 (MONDO:0007790), Charcot-Marie-Tooth disease type 1E (MONDO:0007311), Guillain-Barre syndrome, familial (MONDO:0007691), Roussy-Levy syndrome (MONDO:0008392), Charcot-Marie-Tooth disease (MONDO:0015626), distal hereditary motor neuropathy (MONDO:0018894), Charcot-Marie-Tooth disease type 2E (MONDO:0011894)
Orphanet (11): Hepatic veno-occlusive disease-immunodeficiency syndrome (Orphanet:79124), Charcot-Marie-Tooth disease type 1 (Orphanet:65753), Hereditary neuropathy with liability to pressure palsies (Orphanet:640), Charcot-Marie-Tooth disease type 1A (Orphanet:101081), Dejerine-Sottas syndrome (Orphanet:64748), Roussy-Lévy syndrome (Orphanet:3115), Charcot-Marie-Tooth disease type 1E (Orphanet:90658), Acute inflammatory demyelinating polyradiculoneuropathy (Orphanet:98916), Charcot-Marie-Tooth disease/Hereditary motor and sensory neuropathy (Orphanet:166), Distal hereditary motor neuropathy (Orphanet:53739), Autosomal dominant Charcot-Marie-Tooth disease type 2E (Orphanet:99939)
HPO phenotypes
130 total (30 of 130 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000360 | Tinnitus |
| HP:0000365 | Hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000615 | Abnormal pupil morphology |
| HP:0000639 | Nystagmus |
| HP:0000762 | Decreased nerve conduction velocity |
| HP:0001171 | Split hand |
| HP:0001178 | Ulnar claw |
| HP:0001252 | Hypotonia |
| HP:0001263 | Global developmental delay |
| HP:0001265 | Hyporeflexia |
| HP:0001270 | Motor delay |
| HP:0001284 | Areflexia |
| HP:0001288 | Gait disturbance |
| HP:0001290 | Generalized hypotonia |
| HP:0001308 | Tongue fasciculations |
| HP:0001324 | Muscle weakness |
| HP:0001337 | Tremor |
| HP:0001605 | Vocal cord paralysis |
| HP:0001608 | Abnormality of the voice |
| HP:0001761 | Pes cavus |
| HP:0001762 | Talipes equinovarus |
| HP:0001763 | Pes planus |
| HP:0001765 | Hammertoe |
| HP:0001884 | Talipes calcaneovalgus |
| HP:0001954 | Recurrent fever |
| HP:0002066 | Gait ataxia |
| HP:0002070 | Limb ataxia |
GWAS associations
16 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000224_6 | Chronic lymphocytic leukemia | 6.000000e-10 |
| GCST001762_889 | Obesity-related traits | 6.000000e-06 |
| GCST001806_26 | Corneal structure | 7.000000e-10 |
| GCST002299_9 | Chronic lymphocytic leukemia | 5.000000e-13 |
| GCST002550_23 | Allergic rhinitis | 9.000000e-07 |
| GCST003170_2 | Subcutaneous adipose tissue | 2.000000e-07 |
| GCST003542_22 | Night sleep phenotypes | 5.000000e-06 |
| GCST003818_84 | Resting heart rate | 7.000000e-14 |
| GCST004099_8 | B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy) | 1.000000e-07 |
| GCST004131_130 | Inflammatory bowel disease | 6.000000e-06 |
| GCST004132_109 | Crohn’s disease | 1.000000e-13 |
| GCST004146_4 | Chronic lymphocytic leukemia | 4.000000e-32 |
| GCST004898_2 | Preterm birth (maternal effect) | 5.000000e-08 |
| GCST005647_10 | Amyotrophic lateral sclerosis | 9.000000e-08 |
| GCST005860_3 | Cholangiocarcinoma in primary sclerosing cholangitis (time to event) | 1.000000e-06 |
| GCST009391_1134 | Metabolite levels | 8.000000e-06 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005115 | metabolic rate measurement |
| EFO:0004345 | corneal topography |
| EFO:0003917 | premature birth |
| EFO:0005939 | parental genotype effect measurement |
| EFO:0010489 | glycerophosphocholine measurement |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002607 | Charcot-Marie-Tooth Disease | C10.500.300.200; C10.574.500.495.200; C10.668.829.800.300.200; C16.131.666.300.200; C16.320.400.375.200 |
| C537986 | Charcot-Marie-Tooth disease, Type 1E (supp.) | |
| C537994 | Charcot-Marie-Tooth disease, Type 2E (supp.) | |
| C537257 | Hepatic venoocclusive disease with immunodeficiency (supp.) | |
| C536965 | Tomaculous neuropathy (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL1293298 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
213 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 538,219 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
54 potent at pChembl≥5 of 699 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.67 | Potency | 21.3 | nM | CHEMBL1358402 |
| 7.32 | Potency | 47.8 | nM | ROTENONE |
| 7.32 | Potency | 47.8 | nM | PACLITAXEL |
| 7.22 | Potency | 60.1 | nM | CHEMBL192566 |
| 7.12 | Potency | 75.7 | nM | EMETINE HYDROCHLORIDE |
| 7.07 | Potency | 84.9 | nM | AMSACRINE HYDROCHLORIDE |
| 6.87 | Potency | 134.6 | nM | KENPAULLONE |
| 6.67 | Potency | 213.3 | nM | CHEMBL1357894 |
| 6.67 | Potency | 213.3 | nM | CHEMBL1440857 |
| 6.62 | Potency | 239.3 | nM | CAMPTOTHECIN |
| 6.42 | Potency | 379.3 | nM | CHEMBL124267 |
| 6.42 | Potency | 379.3 | nM | NICLOSAMIDE |
| 6.37 | Potency | 425.6 | nM | IDARUBICIN |
| 6.32 | Potency | 477.5 | nM | CHEMBL1255868 |
| 6.22 | Potency | 601.2 | nM | CHEMBL1605057 |
| 6.12 | Potency | 756.9 | nM | CHEMBL1256839 |
| 6.02 | Potency | 952.8 | nM | CHEMBL371811 |
| 5.97 | Potency | 1069 | nM | CHEMBL112816 |
| 5.87 | Potency | 1346 | nM | CHEMBL1559663 |
| 5.87 | Potency | 1346 | nM | SR-2640 |
| 5.87 | Potency | 1346 | nM | 5-NITRO-2-PHENYLPROPYLAMINOBENZOIC ACID [NPPB] |
| 5.77 | Potency | 1694 | nM | CHEMBL35482 |
| 5.72 | Potency | 1901 | nM | CHEMBL97760 |
| 5.72 | Potency | 1901 | nM | CHEMBL1315457 |
| 5.62 | Potency | 2393 | nM | ISOTRETINOIN |
| 5.57 | Potency | 2686 | nM | CHEMBL1200450 |
| 5.57 | Potency | 2686 | nM | TYRPHOSTIN A9 |
| 5.57 | Potency | 2686 | nM | 2-METHOXYESTRADIOL |
| 5.57 | Potency | 2686 | nM | ESTRONE |
| 5.52 | Potency | 3013 | nM | OXOTREMORINE METHIODIDE |
| 5.52 | Potency | 3013 | nM | CHEMBL1256851 |
| 5.52 | Potency | 3013 | nM | CHEMBL70880 |
| 5.52 | Potency | 3013 | nM | TETRACAINE HYDROCHLORIDE |
| 5.42 | Potency | 3793 | nM | CYCLOSPORINE |
| 5.42 | Potency | 3793 | nM | CHEMBL545050 |
| 5.37 | Potency | 4256 | nM | CHEMBL1256727 |
| 5.37 | Potency | 4256 | nM | CHEMBL24983 |
| 5.32 | Potency | 4776 | nM | FLUOROURACIL |
| 5.22 | Potency | 6012 | nM | CALCIMYCIN |
| 5.22 | Potency | 6012 | nM | CHEMBL1435120 |
| 5.12 | Potency | 7569 | nM | ELLIPTECINE |
| 5.12 | Potency | 7569 | nM | PYRROLIDINE DITHIOCARBAMIC ACID, AMMONIUM SALT |
| 5.12 | Potency | 7569 | nM | TRANILAST |
| 5.07 | Potency | 8492 | nM | CHEMBL14276 |
| 5.07 | Potency | 8492 | nM | CHEMBL1330357 |
| 5.07 | Potency | 8492 | nM | CHEMBL429095 |
| 5.07 | Potency | 8492 | nM | NONIVAMIDE |
| 5.07 | Potency | 8492 | nM | CHEMBL2110371 |
| 5.07 | Potency | 8492 | nM | BAY-11-7085 |
| 5.02 | Potency | 9528 | nM | SANGUINARIUM CHLORIDE |
CTD chemical–gene interactions
67 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 5 |
| Estradiol | affects cotreatment, increases expression, decreases expression, decreases reaction | 3 |
| Tretinoin | decreases expression | 3 |
| Cyclosporine | decreases expression | 3 |
| bisphenol A | increases expression, affects cotreatment | 2 |
| potassium chromate(VI) | affects cotreatment, decreases expression, increases expression | 2 |
| Decitabine | affects expression, increases expression | 2 |
| Ascorbic Acid | decreases expression | 2 |
| Benzo(a)pyrene | increases methylation, affects methylation, increases expression | 2 |
| Cisplatin | affects expression, affects cotreatment, decreases expression | 2 |
| Dexamethasone | increases expression, affects cotreatment | 2 |
| Iron | decreases abundance, decreases expression, increases abundance, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, affects cotreatment | 2 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| trichostatin A | increases expression | 1 |
| ferric ammonium citrate | increases abundance, increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| afimoxifene | decreases expression, decreases reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| zinc chloride | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| tobacco tar | decreases expression, decreases reaction | 1 |
| diallyl disulfide | decreases expression, decreases reaction | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| chromium hexavalent ion | affects expression | 1 |
| 3-nitrobenzanthrone | decreases expression | 1 |
| pinostrobin | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1614171 | Functional | PUBCHEM_BIOASSAY: qHTS Assay for Modulators of Human Peripheral Myelin Protein 22 (PMP22) Expression/Activity. (Class of assay: confirmatory) | PubChem BioAssay data set |
Cellosaurus cell lines
16 cell lines: 10 induced pluripotent stem cell, 4 transformed cell line, 2 finite cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_1K22 | GM05146 | Finite cell line | Female |
| CVCL_1K23 | GM05147 | Transformed cell line | Female |
| CVCL_1K24 | GM05148 | Finite cell line | Male |
| CVCL_1K25 | GM05149 | Transformed cell line | Male |
| CVCL_A2WJ | GM26577 | Transformed cell line | Male |
| CVCL_A4EY | CMT1A-1-hiPSCs 1 | Induced pluripotent stem cell | Male |
| CVCL_A4EZ | CMT1A-1-hiPSCs 2 | Induced pluripotent stem cell | Male |
| CVCL_A4FA | CMT1A-1-hiPSCs 3 | Induced pluripotent stem cell | Male |
| CVCL_A4FB | CMT1A-2-hiPSCs 1 | Induced pluripotent stem cell | Male |
| CVCL_A4FC | CMT1A-2-hiPSCs 2 | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
312 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00380965 | PHASE4 | COMPLETED | Evaluation of the Efficacy of Cesamet™ for the Treatment of Pain in Patients With Chemotherapy-Induced Neuropathy |
| NCT00487981 | PHASE4 | TERMINATED | Spinal Cord Stimulation for Painful Diabetic Neuropathy |
| NCT00904202 | PHASE4 | COMPLETED | A Study Of Lidocaine Patch 5% Alone, Gabapentin Alone, And Lidocaine Patch 5% And Gabapentin In Combination For The Relief Of Pain In Patients With Diverse Peripheral Neuropathic Pain Conditions |
| NCT01192113 | PHASE4 | COMPLETED | Safety and Efficacy of Mecobalamin Injection in Peripheral Neuropathies Patients (Study JGAZSY091109) |
| NCT01373983 | PHASE4 | COMPLETED | Intrathecal Bolus Doses of Ziconotide |
| NCT01458015 | PHASE4 | TERMINATED | Tapentadol Versus Oxycodone - a Mechanism-based Treatment Approach in Neuropathic Pain |
| NCT02074267 | PHASE4 | COMPLETED | Clinical Study for Assessment of the Efficacy of Gabapentin (Carbatin and Neurontin) in Patients With Neuropathy Pain |
| NCT02372149 | PHASE4 | UNKNOWN | IVIg for Demyelination in Diabetes Mellitus |
| NCT02670161 | PHASE4 | ENROLLING_BY_INVITATION | Quality Improvement and Practice Based Research in Neurology Using the EMR |
| NCT07022938 | PHASE4 | COMPLETED | Nutritional Supplement for Treating Chemotherapy Induced Neuropathy |
| NCT07025005 | PHASE4 | RECRUITING | Fenofibrate Role in the Prophylaxis From Peripheral Neuropathy Induced by Bortezomib, Lenalidomide and Dexamethasone (VRd) Protocol in the Treatment of Patients With Multiple Myeloma (MM) |
| NCT02579759 | PHASE3 | COMPLETED | Phase III Trial Assessing the Efficacy and Safety of PXT3003 in CMT1A Patients (PLEO-CMT) |
| NCT00058071 | PHASE3 | COMPLETED | Amifostine in Treating Peripheral Neuropathy in Patients Who Have Received Chemotherapy for Cancer |
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| NCT00195013 | PHASE3 | COMPLETED | Randomized Placebo-Controlled Trial of Glutamine for Breast Cancer Patients With Peripheral Neuropathy |
| NCT00232141 | PHASE3 | COMPLETED | Study of Pregabalin Versus Placebo in the Treatment of Nerve Pain Associated With HIV Neuropathy |
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| NCT00998738 | PHASE3 | TERMINATED | Calcium and Magnesium in Preventing Peripheral Neuropathy Caused by Ixabepilone in Patients With Breast Cancer |
| NCT01049217 | PHASE3 | TERMINATED | Pregabalin Versus Placebo In The Treatment Of Neuropathic Pain Associated With HIV Neuropathy |
| NCT01099449 | PHASE3 | COMPLETED | Calcium Gluconate and Magnesium Sulfate in Preventing Neurotoxicity in Patients With Colon Cancer or Rectal Cancer Receiving Oxaliplatin-Based Combination Chemotherapy |
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| NCT01492920 | PHASE3 | WITHDRAWN | Acetyl-L-Carnitine Hydrochloride in Preventing Peripheral Neuropathy in Patients With Recurrent Ovarian Epithelial Cancer, Primary Peritoneal Cavity Cancer, or Fallopian Tube Cancer Undergoing Chemotherapy |
| NCT01775449 | PHASE3 | COMPLETED | Prevention of Oxaliplatin-induced Neuropathic Pain by a Specific Diet |
| NCT02024191 | PHASE3 | UNKNOWN | The Role of Glutamine for Preventing Oxaliplatin-Induced Peripheral Neuropathy |
| NCT02217267 | PHASE3 | COMPLETED | Long Term Outcome After Serial Lidocaine Infusion in Peripheral Neuropathic Pain |
| NCT02294149 | PHASE3 | UNKNOWN | Vit D3 and Omega 3 in Chemo Induced Neuropathy |
| NCT02311907 | PHASE3 | COMPLETED | Glutathione in Preventing Peripheral Neuropathy Caused by Paclitaxel and Carboplatin in Patients With Ovarian Cancer, Fallopian Tube Cancer, and/or Primary Peritoneal Cancer |
| NCT06071936 | PHASE3 | UNKNOWN | Efficacy and Tolerability of AP707 in Patients With Chronic Pain Due to Traumatic or Post-operative Peripheral Neuropathy |
| NCT06071975 | PHASE3 | UNKNOWN | Long Term Efficacy and Tolerability of AP707 in Patients With Chronic Pain Due to Diabetic Polyneuropathy |
| NCT06071988 | PHASE3 | UNKNOWN | Long Term Efficacy and Tolerability of AP707 in Patients With Chronic Pain Due to Traumatic or Post-operative Peripheral Neuropathy |
| NCT06072573 | PHASE3 | UNKNOWN | Efficacy and Tolerability of AP707 in Patients With Chronic Pain Due to Diabetic Polyneuropathy |
Related Atlas pages
- Associated diseases: hepatic veno-occlusive disease-immunodeficiency syndrome, Charcot-Marie-Tooth disease type 1A, Charcot-Marie-Tooth disease type 1E, hereditary neuropathy with liability to pressure palsies, Charcot-Marie-Tooth disease type 3
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Charcot-Marie-Tooth disease type 1, Charcot-Marie-Tooth disease type 1A, Charcot-Marie-Tooth disease type 1E, Charcot-Marie-Tooth disease type 2E, Charcot-Marie-Tooth disease type 3, cholangiocarcinoma, distal hereditary motor neuropathy, Guillain-Barre syndrome, familial, hepatic veno-occlusive disease-immunodeficiency syndrome, hereditary neuropathy with liability to pressure palsies, Hodgkins lymphoma, Roussy-Levy syndrome