PNOC
gene geneOn this page
Also known as PPNOCN/OFQNOP
Summary
PNOC (prepronociceptin, HGNC:9163) is a protein-coding gene on chromosome 8p21.1, encoding Prepronociceptin (Q13519). Ligand of the opioid receptor-like receptor OPRL1.
This gene encodes a preproprotein that is proteolytically processed to generate multiple protein products. These products include nociceptin, nocistatin, and orphanin FQ2 (OFQ2). Nociceptin, also known as orphanin FQ, is a 17-amino acid neuropeptide that binds to the nociceptin receptor to induce increased pain sensitivity, and may additionally regulate body temperature, learning and memory, and hunger. Another product of the encoded preproprotein, nocistatin, may inhibit the effects of nociceptin.
Source: NCBI Gene 5368 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 34 total
- MANE Select transcript:
NM_006228
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9163 |
| Approved symbol | PNOC |
| Name | prepronociceptin |
| Location | 8p21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PPNOC, N/OFQ, NOP |
| Ensembl gene | ENSG00000168081 |
| Ensembl biotype | protein_coding |
| OMIM | 601459 |
| Entrez | 5368 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 4 protein_coding, 1 retained_intron
ENST00000301908, ENST00000518479, ENST00000519592, ENST00000522209, ENST00000923262
RefSeq mRNA: 2 — MANE Select: NM_006228
NM_001284244, NM_006228
CCDS: CCDS6066, CCDS64862
Canonical transcript exons
ENST00000301908 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001120173 | 28329135 | 28329283 |
| ENSE00001335563 | 28317268 | 28317316 |
| ENSE00003578608 | 28339040 | 28339491 |
| ENSE00003842877 | 28342942 | 28343351 |
Expression profiles
Bgee: expression breadth ubiquitous, 167 present calls, max score 93.98.
FANTOM5 (CAGE): breadth broad, TPM avg 3.4313 / max 1212.6098, expressed in 250 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 88191 | 2.4689 | 168 |
| 88193 | 0.8701 | 75 |
| 88190 | 0.0922 | 43 |
Top tissues by expression
273 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 93.98 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 84.94 | gold quality |
| lymph node | UBERON:0000029 | 84.00 | gold quality |
| prefrontal cortex | UBERON:0000451 | 81.49 | gold quality |
| spleen | UBERON:0002106 | 81.49 | gold quality |
| granulocyte | CL:0000094 | 79.35 | gold quality |
| vermiform appendix | UBERON:0001154 | 79.33 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 78.80 | silver quality |
| bone marrow cell | CL:0002092 | 78.35 | gold quality |
| cingulate cortex | UBERON:0003027 | 78.04 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 77.91 | gold quality |
| leukocyte | CL:0000738 | 76.41 | gold quality |
| endothelial cell | CL:0000115 | 76.18 | silver quality |
| monocyte | CL:0000576 | 75.98 | gold quality |
| mononuclear cell | CL:0000842 | 75.95 | gold quality |
| frontal cortex | UBERON:0001870 | 75.67 | gold quality |
| neocortex | UBERON:0001950 | 75.65 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 75.47 | silver quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 75.14 | gold quality |
| frontal pole | UBERON:0002795 | 75.12 | silver quality |
| blood | UBERON:0000178 | 74.02 | gold quality |
| right frontal lobe | UBERON:0002810 | 73.66 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 73.24 | silver quality |
| bone marrow | UBERON:0002371 | 72.58 | gold quality |
| caecum | UBERON:0001153 | 72.53 | gold quality |
| cerebral cortex | UBERON:0000956 | 72.15 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 71.85 | gold quality |
| ganglionic eminence | UBERON:0004023 | 71.40 | gold quality |
| paraflocculus | UBERON:0005351 | 71.33 | gold quality |
| primary visual cortex | UBERON:0002436 | 70.93 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 22.74 |
| E-MTAB-8410 | no | 0.77 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CREB1, PTF1A, SP1
miRNA regulators (miRDB)
41 targeting PNOC, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-4271 | 99.88 | 68.32 | 2244 |
| HSA-MIR-3934-3P | 99.76 | 65.51 | 1351 |
| HSA-MIR-199A-3P | 99.75 | 70.48 | 929 |
| HSA-MIR-199B-3P | 99.75 | 70.48 | 929 |
| HSA-MIR-3129-5P | 99.75 | 70.46 | 914 |
| HSA-MIR-4516 | 99.61 | 67.78 | 3390 |
| HSA-MIR-4489 | 99.50 | 65.56 | 785 |
| HSA-MIR-203A-3P | 99.49 | 70.56 | 2806 |
| HSA-MIR-6743-5P | 99.48 | 63.60 | 721 |
| HSA-MIR-3612 | 99.45 | 66.02 | 1333 |
| HSA-MIR-650 | 99.45 | 65.77 | 1309 |
| HSA-MIR-5693 | 99.24 | 66.67 | 1106 |
| HSA-MIR-3125 | 99.14 | 68.49 | 2269 |
| HSA-MIR-4434 | 99.10 | 67.01 | 1984 |
| HSA-MIR-5703 | 99.10 | 67.09 | 2053 |
| HSA-MIR-3916 | 98.99 | 68.04 | 2155 |
| HSA-MIR-6859-5P | 98.99 | 68.07 | 2049 |
| HSA-MIR-936 | 98.87 | 70.51 | 1124 |
Literature-anchored findings (GeneRIF, showing 29)
- Peripheral blood levels are elevated in Wilson disease (PMID:12812047)
- results show that nociceptin/NociR is present and functional in human neutrophils, and the results identify a novel dialogue pathway between neural and immune tissues (PMID:12950177)
- The presence of two different forms of mature nocistatin (NST-17 and NST-30) and a possible N-terminal methionine cleaved NST-29 have been confirmed by both radioimmunoassay and mass spectrometry. (PMID:16043263)
- Two SNPs in PNOC showed marginal association with alcoholism and one with illicit drug dependence. (PMID:17910740)
- Peripheral blood mononuclear cells transcribe pre-pro-nociception/orphaninFQ. (PMID:18292431)
- Our results support the concept postulating that chronic ethanol consumption and withdrawal downregulate the PNOC/OPRL1 system, which critically controls alcohol intake. (PMID:19501074)
- Unstable angina is associated with a significant increase in circulating nociceptin/orphanin FQ levels unrelated to intervening transient myocardial ischemia or hemodynamic changes. (PMID:19560501)
- data obtained from neocortex of epileptic patients provide strong evidence that temporal lobe epilepsy is associated with alterations in mu opioid and nociceptin receptor binding and signal transduction mechanisms downstream of these receptors (PMID:19573600)
- Results showed that vigorous and prolonged hyperventilation changes plasma nociceptin/orphanin FQ levels due to the direct effects of hypocapnic alkalosis or to different sympatho-adrenergic system responses. (PMID:20100531)
- PNOC expression level was 2.99 times higher in vitiligo involved skin when compared to healthy control skin. (PMID:20888736)
- chronic ischemic conditions of atherosclerotic origin are associated with significantly lower plasma nociceptin levels (PMID:21310194)
- activation of NFkappaB by OFQ/Nociceptin suggests a likely mechanism for its modulation of the central nervous and immune systems. (PMID:21547539)
- A high expression of nociceptin in adenomyosis may be one of the casual factors of dysmenorrhea. The severity of dysmenorrhea is positively correlated with the expression of nociceptin in eutopic endometrial tissue. (PMID:21600132)
- The presence of Orphanin, Oxytocin, ANP, eNOS and iNOS proteins was identified in the human umbilical cord.[Orphanin] (PMID:21744319)
- Strong expression of PNOC was seen in neoplastic neurons of 7/7 brainstem gangliogliomas, but was significantly weaker in non-brainstem GGs. (PMID:22706982)
- REVIEW: intracellular localization and physiological role of nociceptin and nocistatin (PMID:23454174)
- Data suggest that nociceptin and nociceptin receptor evolved as one of 4 opioid receptor systems in vertebrates; this system exhibits both analgesic and hyperalgesic effects. [REVIEW] (PMID:25677768)
- Data suggest that nociceptin plays a crucial role in progress of meiosis during spermatogenesis. [REVIEW] (PMID:25677772)
- Opioid neuropeptide systems are important mediators of ovarian steroid signaling that regulate reproduction in female; data suggest that nociceptin and nociceptin receptor system in arcuate nucleus of hypothalamus is such a system. [REVIEW] (PMID:25677773)
- Data suggest that both nociceptin and nocistatin inhibit myometrial contractions and may play roles in perception of pain during delivery. [REVIEW] (PMID:25677774)
- Data suggest that the nociceptin/nociceptin receptor system is involved in modulation of the immune response and in pathogenesis of autoimmune diseases. [REVIEW] (PMID:25677775)
- Data suggest that the nociceptin/nociceptin receptor system is involved in modulation of psychological and inflammatory stress responses and in pathogenesis of anxiety. [REVIEW] (PMID:25677776)
- Data suggest that interaction between the nociceptin/nociceptin receptor system and the orexin/orexin receptor system in neurons of the hypothalamus positively and negatively modulate complex and integrated responses to stress. [REVIEW] (PMID:25677777)
- Data suggest that nociceptin/nociceptin receptor signaling in neurons of the hippocampus modulate learning and memory. [REVIEW] (PMID:25677778)
- findings suggest that SNPs in opioid receptors and the PNOC genes are associated with NAS severity. (PMID:26233486)
- Study presents evidence suggesting that the PNOC and OPRL1 are dysregulated in suicide completers, thereby potentially contributing to impaired emotional and behavioral control and, ultimately, to the suicidal crisis (PMID:26349406)
- The presence of the PNOC rs732636 A allele was associated with the worse Neonatal abstinence syndrome outcomes in infants. (PMID:26791055)
- found differences in Neonatal Abstinence Syndrome outcomes depending on PNOC and COMT SNP genotype. (PMID:27983768)
- PNOC Expressed by B Cells in Cholangiocarcinoma Was Survival Related and LAIR2 Could Be a T Cell Exhaustion Biomarker in Tumor Microenvironment: Characterization of Immune Microenvironment Combining Single-Cell and Bulk Sequencing Technology. (PMID:33841428)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | pnocb | ENSDARG00000024189 |
| danio_rerio | pnoca | ENSDARG00000025024 |
| mus_musculus | Pnoc | ENSMUSG00000045731 |
| rattus_norvegicus | Pnoc | ENSRNOG00000014231 |
Paralogs (2): PDYN (ENSG00000101327), PENK (ENSG00000181195)
Protein
Protein identifiers
Prepronociceptin — Q13519 (reviewed: Q13519)
All UniProt accessions (2): Q13519, E7EVP0
UniProt curated annotations — full annotation on UniProt →
Function. Ligand of the opioid receptor-like receptor OPRL1. It may act as a transmitter in the brain by modulating nociceptive and locomotor behavior. May be involved in neuronal differentiation and development. Blocks nociceptin action in pain transmission by inhibiting nociceptin-induced hyperalgesia and allodynia. Has potent analgesic activity.
Subcellular location. Secreted.
Tissue specificity. Predominantly expressed in the brain and spinal cord. Also expressed and secreted by peripheral blood neutrophils following degranulation.
Post-translational modifications. Specific enzymatic cleavages at paired basic residues probably yield other active peptides besides nociceptin. The N-terminal domain contains 6 conserved cysteines thought to be involved in disulfide bonding and/or processing.
Similarity. Belongs to the opioid neuropeptide precursor family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13519-1 | 1 | yes |
| Q13519-2 | 2 |
RefSeq proteins (2): NP_001271173, NP_006219* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002367 | Nociceptin | Family |
| IPR006024 | Opioid_neupept | Family |
Pfam: PF01160
UniProt features (9 total): peptide 3, propeptide 2, signal peptide 1, splice variant 1, strand 1, helix 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8F7X | ELECTRON MICROSCOPY | 3.28 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13519-F1 | 63.16 | 0.00 |
Antibody-complex structures (SAbDab): 1 — 8F7X
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-375276 | Peptide ligand-binding receptors |
| R-HSA-418594 | G alpha (i) signalling events |
MSigDB gene sets: 240 (showing top):
GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_RESPONSE_TO_ETHANOL, YAATNRNNNYNATT_UNKNOWN, GOBP_ACID_SECRETION, MODULE_274, GOBP_BEHAVIOR, GOBP_RESPONSE_TO_COCAINE, NKX25_02, GOBP_REGULATION_OF_SYNAPTIC_TRANSMISSION_GLUTAMATERGIC, LFA1_Q6, GOBP_ADULT_BEHAVIOR, AREB6_03, GOBP_NEUROTRANSMITTER_TRANSPORT, TGACCTY_ERR1_Q2, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND
GO Biological Process (7): signal transduction (GO:0007165), neuropeptide signaling pathway (GO:0007218), chemical synaptic transmission (GO:0007268), neuron-neuron synaptic transmission (GO:0007270), female pregnancy (GO:0007565), sensory perception (GO:0007600), sensory perception of pain (GO:0019233)
GO Molecular Function (4): opioid peptide activity (GO:0001515), neuropeptide hormone activity (GO:0005184), opioid receptor binding (GO:0031628), receptor ligand activity (GO:0048018)
GO Cellular Component (7): extracellular region (GO:0005576), plasma membrane (GO:0005886), dendrite (GO:0030425), neuronal cell body (GO:0043025), axon terminus (GO:0043679), synaptic membrane (GO:0097060), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Class A/1 (Rhodopsin-like receptors) | 1 |
| GPCR downstream signalling | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| G protein-coupled receptor signaling pathway | 1 |
| anterograde trans-synaptic signaling | 1 |
| chemical synaptic transmission | 1 |
| multi-organism reproductive process | 1 |
| multi-multicellular organism process | 1 |
| nervous system process | 1 |
| sensory perception | 1 |
| receptor ligand activity | 1 |
| hormone activity | 1 |
| neuropeptide activity | 1 |
| G protein-coupled receptor binding | 1 |
| signaling receptor binding | 1 |
| signal transduction | 1 |
| signaling receptor activator activity | 1 |
| cellular anatomical structure | 1 |
| membrane | 1 |
| cell periphery | 1 |
| neuron projection | 1 |
| dendritic tree | 1 |
| somatodendritic compartment | 1 |
| cell body | 1 |
| neuron projection terminus | 1 |
| presynapse | 1 |
| distal axon | 1 |
| synapse | 1 |
| plasma membrane region | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
1334 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PNOC | PDYN | P01213 | 964 |
| PNOC | POMC | P01189 | 822 |
| PNOC | OPRM1 | P35372 | 820 |
| PNOC | NAT1 | P18440 | 767 |
| PNOC | CHRNA2 | Q15822 | 757 |
| PNOC | NPY | P01303 | 747 |
| PNOC | CRH | P06850 | 743 |
| PNOC | TAC1 | P20366 | 741 |
| PNOC | GAL | P22466 | 737 |
| PNOC | SPINT2 | O43291 | 720 |
| PNOC | OPRD1 | P41143 | 711 |
| PNOC | HCRT | O43612 | 663 |
| PNOC | PPP3CC | P48454 | 654 |
| PNOC | PMCH | P20382 | 638 |
| PNOC | NPFF | O15130 | 621 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PNOC | CETN3 | psi-mi:“MI:0914”(association) | 0.530 |
| PNOC | NUP155 | psi-mi:“MI:0914”(association) | 0.530 |
| P | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (16): PNOC (Biochemical Activity), PNOC (Reconstituted Complex), PNOC (Reconstituted Complex), PDP1 (Affinity Capture-MS), WDTC1 (Affinity Capture-MS), LNPEP (Affinity Capture-MS), FAM175B (Affinity Capture-MS), WDFY2 (Affinity Capture-MS), DCAF6 (Affinity Capture-MS), HSPA5 (Affinity Capture-MS), NUP155 (Affinity Capture-MS), BABAM1 (Affinity Capture-MS), CETN3 (Affinity Capture-MS), CDC26 (Affinity Capture-MS), TIMM10B (Affinity Capture-MS)
ESM2 similar proteins: A0A1L2F565, B3IWF7, B3IWF9, D3Z752, E2E4E4, F1QQI2, I7C2V3, M0R8L2, O46540, O62647, O73812, O93448, P01146, P01257, P01258, P07501, P0DQY8, P10093, P12272, P12969, P15743, P22858, P27104, P47851, P51918, P52211, P58073, P63152, P63292, P70160, P81564, P81872, Q0VBW8, Q0VC44, Q13519, Q5H8A3, Q60549, Q64387, Q75V94, Q75V95
Diamond homologs: O62647, Q13519, Q62923, Q64387, P55791
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
34 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 26 |
| Likely benign | 1 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
610 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:28339336:G:GT | donor_gain | 1.0000 |
| 8:28317312:CTCAG:C | donor_loss | 0.9900 |
| 8:28317313:TCAG:T | donor_loss | 0.9900 |
| 8:28317314:CAGGT:C | donor_loss | 0.9900 |
| 8:28317316:GGTA:G | donor_loss | 0.9900 |
| 8:28317317:G:C | donor_loss | 0.9900 |
| 8:28317318:T:G | donor_loss | 0.9900 |
| 8:28339035:TGCA:T | acceptor_loss | 0.9900 |
| 8:28339036:GCA:G | acceptor_loss | 0.9900 |
| 8:28339039:G:GC | acceptor_loss | 0.9900 |
| 8:28339324:G:GT | donor_gain | 0.9900 |
| 8:28339362:G:GG | donor_gain | 0.9900 |
| 8:28339429:GAATG:G | donor_gain | 0.9900 |
| 8:28339492:G:GG | donor_gain | 0.9900 |
| 8:28329127:T:G | acceptor_gain | 0.9800 |
| 8:28329133:A:AG | acceptor_gain | 0.9800 |
| 8:28329134:G:GG | acceptor_gain | 0.9800 |
| 8:28339039:GGT:G | acceptor_gain | 0.9800 |
| 8:28339039:GGTGT:G | acceptor_gain | 0.9800 |
| 8:28339490:GA:G | donor_gain | 0.9800 |
| 8:28329134:GCA:G | acceptor_gain | 0.9700 |
| 8:28329134:GCAC:G | acceptor_gain | 0.9700 |
| 8:28329279:TGGAG:T | donor_loss | 0.9700 |
| 8:28329281:GAGGT:G | donor_loss | 0.9700 |
| 8:28329282:AG:A | donor_loss | 0.9700 |
| 8:28329283:GG:G | donor_loss | 0.9700 |
| 8:28329284:G:GC | donor_loss | 0.9700 |
| 8:28329285:TAGG:T | donor_loss | 0.9700 |
| 8:28339038:A:AG | acceptor_gain | 0.9700 |
| 8:28339038:AGGT:A | acceptor_gain | 0.9700 |
AlphaMissense
1168 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:28339310:T:C | F133L | 0.998 |
| 8:28339311:T:G | F133C | 0.998 |
| 8:28339312:C:A | F133L | 0.998 |
| 8:28339312:C:G | F133L | 0.998 |
| 8:28339311:T:C | F133S | 0.995 |
| 8:28339336:G:C | R141S | 0.993 |
| 8:28339336:G:T | R141S | 0.993 |
| 8:28339327:G:C | K138N | 0.992 |
| 8:28339327:G:T | K138N | 0.992 |
| 8:28339301:T:C | F130L | 0.991 |
| 8:28339303:T:A | F130L | 0.991 |
| 8:28339303:T:G | F130L | 0.991 |
| 8:28339368:T:C | F152S | 0.991 |
| 8:28339354:G:C | K147N | 0.990 |
| 8:28339354:G:T | K147N | 0.990 |
| 8:28339305:G:A | G131E | 0.989 |
| 8:28339367:T:C | F152L | 0.989 |
| 8:28339369:T:A | F152L | 0.989 |
| 8:28339369:T:G | F152L | 0.989 |
| 8:28339300:A:C | R129S | 0.988 |
| 8:28339300:A:T | R129S | 0.988 |
| 8:28339335:G:C | R141T | 0.988 |
| 8:28339379:T:G | Y156D | 0.987 |
| 8:28339339:G:C | K142N | 0.986 |
| 8:28339339:G:T | K142N | 0.986 |
| 8:28339358:T:C | F149L | 0.986 |
| 8:28339360:C:A | F149L | 0.986 |
| 8:28339360:C:G | F149L | 0.986 |
| 8:28339361:A:C | S150R | 0.986 |
| 8:28339363:T:A | S150R | 0.986 |
dbSNP variants (sampled 300 via entrez): RS1000018752 (8:28341623 T>C), RS1000067654 (8:28320373 A>G), RS1000091992 (8:28341362 T>C), RS1000171890 (8:28318287 G>T), RS1000204714 (8:28318545 G>A,T), RS1000514750 (8:28330192 C>T), RS1000636613 (8:28339667 T>C), RS1000672155 (8:28324239 C>A,T), RS1000678888 (8:28324051 T>A), RS1000731690 (8:28330362 C>T), RS1001024104 (8:28343044 C>A), RS1001038913 (8:28333226 T>A), RS1001095919 (8:28342873 T>G), RS1001259058 (8:28333868 C>G,T), RS1001313146 (8:28336889 T>C)
Disease associations
OMIM: gene MIM:601459 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004904_78 | Body mass index | 4.000000e-08 |
| GCST009391_1547 | Metabolite levels | 6.000000e-06 |
| GCST011494_40 | Daytime nap | 2.000000e-12 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0010511 | niacinamide measurement |
| EFO:0007828 | daytime rest measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
4 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs351776 | Toxicity | 3 | buprenorphine | Neonatal Abstinence Syndrome |
| rs351776 | Toxicity | 3 | methadone | Neonatal Abstinence Syndrome |
| rs4732636 | Toxicity | 3 | buprenorphine | Neonatal Abstinence Syndrome |
| rs4732636 | Toxicity | 3 | methadone | Neonatal Abstinence Syndrome |
PharmGKB variants
2 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs351776 | PNOC | 3 | 0.00 | 2 | buprenorphine;methadone |
| rs2614095 | PNOC | 0.00 | 0 |
CTD chemical–gene interactions
17 total (human), top 17 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects methylation, increases expression | 2 |
| bisphenol F | affects cotreatment, increases methylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, affects methylation, decreases methylation | 1 |
| arsenite | increases methylation | 1 |
| butyraldehyde | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| bisphenol S | decreases methylation | 1 |
| Fulvestrant | increases methylation, affects cotreatment, affects methylation | 1 |
| Benzo(a)pyrene | affects methylation, decreases methylation | 1 |
| Formaldehyde | decreases expression | 1 |
| Lead | affects expression | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Triclosan | decreases expression | 1 |
| Vincristine | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.