PNPLA2
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Also known as desnutrinTTS-2.2ATGLFP17548iPLA2zeta
Summary
PNPLA2 (patatin like domain 2, triacylglycerol lipase, HGNC:30802) is a protein-coding gene on chromosome 11p15.5, encoding Patatin-like phospholipase domain-containing protein 2 (Q96AD5). Catalyzes the initial step in triglyceride hydrolysis in adipocyte and non-adipocyte lipid droplets.
This gene encodes an enzyme which catalyzes the first step in the hydrolysis of triglycerides in adipose tissue. Mutations in this gene are associated with neutral lipid storage disease with myopathy.
Source: NCBI Gene 57104 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neutral lipid storage myopathy (Definitive, ClinGen)
- GWAS associations: 19
- Clinical variants (ClinVar): 640 total — 29 pathogenic, 6 likely-pathogenic
- Phenotypes (HPO): 71
- Druggable target: yes
- MANE Select transcript:
NM_020376
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30802 |
| Approved symbol | PNPLA2 |
| Name | patatin like domain 2, triacylglycerol lipase |
| Location | 11p15.5 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | desnutrin, TTS-2.2, ATGL, FP17548, iPLA2zeta |
| Ensembl gene | ENSG00000177666 |
| Ensembl biotype | protein_coding |
| OMIM | 609059 |
| Entrez | 57104 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 8 protein_coding, 5 retained_intron
ENST00000336615, ENST00000525250, ENST00000526083, ENST00000529255, ENST00000531923, ENST00000534561, ENST00000869283, ENST00000869284, ENST00000869285, ENST00000869286, ENST00000869287, ENST00000921859, ENST00000921860
RefSeq mRNA: 1 — MANE Select: NM_020376
NM_020376
CCDS: CCDS7718
Canonical transcript exons
ENST00000336615 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001262761 | 823694 | 823855 |
| ENSE00001262766 | 823527 | 823587 |
| ENSE00001262781 | 821628 | 821860 |
| ENSE00001303954 | 824523 | 825573 |
| ENSE00001362190 | 819574 | 819905 |
| ENSE00001362195 | 818914 | 818958 |
| ENSE00003477028 | 824314 | 824436 |
| ENSE00003483204 | 823998 | 824130 |
| ENSE00003608098 | 821958 | 822023 |
| ENSE00003635008 | 822397 | 822606 |
Expression profiles
Bgee: expression breadth ubiquitous, 264 present calls, max score 99.54.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 148.1349 / max 4553.0667, expressed in 1825 samples.
FANTOM5 promoters (12 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 112268 | 126.2173 | 1823 |
| 112267 | 14.7344 | 998 |
| 112269 | 2.5317 | 621 |
| 112275 | 1.2039 | 571 |
| 112280 | 0.9695 | 462 |
| 112274 | 0.8789 | 394 |
| 112273 | 0.6347 | 295 |
| 112277 | 0.3709 | 130 |
| 112281 | 0.2289 | 73 |
| 112276 | 0.1662 | 54 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| omental fat pad | UBERON:0010414 | 99.54 | gold quality |
| peritoneum | UBERON:0002358 | 99.50 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 99.23 | gold quality |
| apex of heart | UBERON:0002098 | 99.09 | gold quality |
| metanephros cortex | UBERON:0010533 | 98.83 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 98.77 | gold quality |
| left coronary artery | UBERON:0001626 | 98.68 | gold quality |
| mucosa of stomach | UBERON:0001199 | 98.67 | gold quality |
| right lung | UBERON:0002167 | 98.60 | gold quality |
| coronary artery | UBERON:0001621 | 98.56 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 98.53 | gold quality |
| body of stomach | UBERON:0001161 | 98.49 | gold quality |
| minor salivary gland | UBERON:0001830 | 98.49 | gold quality |
| right coronary artery | UBERON:0001625 | 98.46 | gold quality |
| gastrocnemius | UBERON:0001388 | 98.42 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 98.42 | gold quality |
| tibial nerve | UBERON:0001323 | 98.40 | gold quality |
| body of pancreas | UBERON:0001150 | 98.30 | gold quality |
| heart left ventricle | UBERON:0002084 | 98.30 | gold quality |
| right atrium auricular region | UBERON:0006631 | 98.29 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 98.28 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 98.24 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 98.21 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 98.21 | gold quality |
| thoracic aorta | UBERON:0001515 | 98.19 | gold quality |
| popliteal artery | UBERON:0002250 | 98.19 | gold quality |
| tibial artery | UBERON:0007610 | 98.19 | gold quality |
| ascending aorta | UBERON:0001496 | 98.18 | gold quality |
| cardiac ventricle | UBERON:0002082 | 98.17 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 98.15 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-114 | yes | 43.70 |
| E-GEOD-75367 | no | 71.86 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): EGR1, ELF1, FOXO1, PPARD, PPARG, TFE3
miRNA regulators (miRDB)
42 targeting PNPLA2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-3941 | 99.86 | 70.54 | 2735 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-518A-5P | 99.70 | 69.01 | 2209 |
| HSA-MIR-527 | 99.70 | 69.01 | 2209 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-1249-5P | 99.61 | 66.55 | 2049 |
| HSA-MIR-6797-5P | 99.61 | 66.55 | 2084 |
| HSA-MIR-186-3P | 99.51 | 66.24 | 1685 |
| HSA-MIR-148A-5P | 99.30 | 68.27 | 1141 |
| HSA-MIR-4291 | 99.20 | 68.88 | 2969 |
| HSA-MIR-485-5P | 99.10 | 64.78 | 1889 |
| HSA-MIR-6884-5P | 99.10 | 64.50 | 1987 |
| HSA-MIR-3619-5P | 99.00 | 68.87 | 2308 |
| HSA-MIR-6829-5P | 98.86 | 65.12 | 1480 |
| HSA-MIR-2276-3P | 98.76 | 67.75 | 1384 |
| HSA-MIR-455-5P | 98.74 | 67.31 | 795 |
| HSA-MIR-761 | 98.71 | 68.07 | 2051 |
| HSA-MIR-3187-5P | 98.36 | 65.74 | 1776 |
Literature-anchored findings (GeneRIF, showing 40)
- iPLA2epsilon (adiponutrin), iPLA2zeta (TTS-2.2), and iPLA2eta (GS2) are three novel TAG lipases/acylglycerol transacylases that likely participate in TAG hydrolysis and the acyl-CoA independent transacylation of acylglycerols (PMID:15364929)
- reported that adipose triglyceride lipase (ATGL), catalyzes the initial step in triglyceride hydrolysis; ATGL and hormone-sensitive lipase (HSL) coordinately catabolize stored triglycerides in adipose tissue [ATGL] (PMID:15550674)
- Results show that adipose triglyceride lipase has an important role in lipid droplet/adiposome turnover (PMID:16239926)
- Polymorphisms indicate potential role of ATGL in pathways involved in components of the metabolic syndrome. (PMID:16644682)
- CGI-58 interacts with adipose triglyceride lipase, stimulating its TG hydrolase activity up to 20-fold (PMID:16679289)
- PNPLA2 is not regulated by obesity and exhibits low in vitro triglyceride hydrolase activity. (PMID:16752181)
- identified a novel PEDF-R gene in the retina for a phospholipase-linked membrane protein with high affinity for PEDF, suggesting a molecular pathway by which ligand/receptor interaction on the cell surface could generate a cellular signal (PMID:17032652)
- Neutral lipid storage disease subgroup characterized by mild myopathy, absence of ichthyosis and mutations in both alleles of adipose triglyceride lipase. (PMID:17187067)
- Adipose triglyceride lipase (ATGL) is less important than hormone-sensitive lipase (HSL) in regulating catecholamine-induced lipolysis. Both lipases regulate basal lipolysis in human adipocytes. ATGL expression is not influenced by obesity or PCOS. (PMID:17327373)
- In obese subjects, insulin resistance and hyperinsulinemia are strongly associated with ATGL and HSL mRNA and protein expression, independent of fat mass (PMID:17356053)
- The lack of correlation between ATGL protein content and in vitro TG lipase activity indicates that small decrements in ATGL protein expression are not responsible for the reduction in TG lipase activity observed in obesity. (PMID:17609260)
- Deficient in lipid storage diseases. (PMID:17631826)
- In the present study a novel homozygous PNPLA2 mutation c.475_478dupCTCC (p.Gln160ProfsX19) in the patatin domain, the ATGL active site, was detected in a woman with NLSD and severe myopathy. (PMID:17657808)
- mRNA expression is closely related to individual and regional differences in adipocyte size; impaired insulin sensitivity is associated with decreased aadipose triglyceride lipase mRNA expression. (PMID:18072017)
- There is a novel role for PEDF in hepatic triglyceride homeostasis through binding to ATGL. Both localize to adiposomes in hepatocytes. (PMID:18191271)
- ATGL expression in skeletal muscle fibers, slow-twitch, is demonstrated. (PMID:18224330)
- the C-terminal region of ATGL is essential for proper localization of the enzyme and suppresses enzyme activity (PMID:18445597)
- The lack of the C-terminal domain of adipose triglyceride lipase causes neutral lipid storage disease through impaired interactions with lipid droplets. (PMID:18445677)
- Two novel homozygous mutations in exon 5 of PNPLA2 gene were found in patients with neutral lipid storage disease associated with myopathy. (PMID:18952067)
- review of adipose triglyceride lipase and the lipolytic catabolism of cellular fat stores [review] (PMID:18952573)
- Review focuses on the importance of ATGL as TG lipase within the “lipolytic machinery” and the current knowledge of molecular mechanisms that regulate ATGL activity. (PMID:19010445)
- Chanarin-Dorfman syndrome: deficiency in CGI-58, a lipid droplet-bound coactivator of lipase. (Review) (PMID:19061969)
- ATGL in addition to hormone sensitive lipase may be important for human skeletal muscle lipolysis (PMID:19106247)
- No association between genetic variants in PNPLA2 genes and childhood and adolescent obesity (PMID:19390624)
- review summarizes recent findings with the goal of relating structural variants of ATGL and CGI-58 to functional consequences in lipid metabolism [review] (PMID:19401457)
- results suggest that ATGL/CGI-58 acts independently of HSL and precedes its action in the sequential hydrolysis of triglycerides in human hMADS adipocytes (PMID:19433586)
- critical sites in the N-terminal region of desnutrin and the requirement of the C-terminal region for TAG hydrolysis in cultured cells (PMID:19692632)
- TNFalpha decreased ATGL and HSL protein content and triglycerides (TG)-hydrolase activity but increased basal lipolysis due to a marked reduction in perilipin protein content (PMID:19695247)
- The results suggest a molecular pathway by which PEDF ligand/receptor interactions on the cell surface could generate a cellular signal. (PMID:20237999)
- variants within PNPLA2 may modulate the TG component of the familial combined hyperlipidemia trait, thus implicating PNPLA2 as modifier gene in this lipid disorder (PMID:20832801)
- A novel homozygous mutation IVS2+1G > A in the PNPLA2 gene was identified in 2 cases causing neutral lipid storage disease with myopathy (NLSDM.) (PMID:21073837)
- Adipose triglyceride lipase (ATGL) levels were inversely correlated with body mass index and positively correlated with insulin sensitivity index. In muscle, ATGL mRNA had a strong positive relationship with carnitine palmitoyltransferase I mRNA. (PMID:21129760)
- 1 out of 13 healthy individuals carried at least one rare mutation of PNPLA2. (PMID:21170305)
- interaction of ATGL with CGI-58 increased lipolysis, whereas interaction of ATGL with perilipin 5 decreased lipolysis. (PMID:21393244)
- Data indicate that altered ATGL and HSL expression in skeletal muscle could promote DAG accumulation and disrupt insulin signaling and action. (PMID:21498783)
- Resveratrol increased adipose triglyceride lipase gene and protein expressions, an effect that was not observed for hormone-sensitive lipase in human SGBS adipocytes. (PMID:21543206)
- Four novel and two previously reported mutations were detected, affecting different parts of the PNPLA2 gene in 6 patients with neutral lipid storage disease (PMID:21544567)
- findings are compatible with the notion that the ATGL-G0S2 complex is an important long-term regulator of lipolysis under physiological conditions such as fasting in humans (PMID:21613358)
- total lipase, ATGL and HSL activities were higher in visceral white adipose tissue of cancer patients compared with individuals without cancer and higher in cancer patients with cachexia compared with cancer patients without cachexia (PMID:21680814)
- the C terminus sequesters ABHD5 and thus inhibits basal ATGL activity (PMID:21757733)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | pnpla2 | ENSDARG00000089390 |
| mus_musculus | Pnpla2 | ENSMUSG00000025509 |
| rattus_norvegicus | Pnpla2 | ENSRNOG00000069673 |
Paralogs (4): PNPLA4 (ENSG00000006757), PNPLA5 (ENSG00000100341), PNPLA3 (ENSG00000100344), PNPLA1 (ENSG00000180316)
Protein
Protein identifiers
Patatin-like phospholipase domain-containing protein 2 — Q96AD5 (reviewed: Q96AD5)
Alternative names: Adipose triglyceride lipase, Calcium-independent phospholipase A2-zeta, Desnutrin, Pigment epithelium-derived factor receptor, TTS2.2, Transport-secretion protein 2
All UniProt accessions (1): Q96AD5
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the initial step in triglyceride hydrolysis in adipocyte and non-adipocyte lipid droplets. Exhibits a strong preference for the hydrolysis of long-chain fatty acid esters at the sn-2 position of the glycerol backbone and acts coordinately with LIPE/HLS and DGAT2 within the lipolytic cascade. Also possesses acylglycerol transacylase and phospholipase A2 activities. Transfers fatty acid from triglyceride to retinol, hydrolyzes retinylesters, and generates 1,3-diacylglycerol from triglycerides. Regulates adiposome size and may be involved in the degradation of adiposomes. Catalyzes the formation of an ester bond between hydroxy fatty acids and fatty acids derived from triglycerides or diglycerides to generate fatty acid esters of hydroxy fatty acids (FAHFAs) in adipocytes. Acts antagonistically with LDAH in regulation of cellular lipid stores. Inhibits LDAH-stimulated lipid droplet fusion. May play an important role in energy homeostasis. May play a role in the response of the organism to starvation, enhancing hydrolysis of triglycerides and providing free fatty acids to other tissues to be oxidized in situations of energy depletion.
Subunit / interactions. Interacts with ABHD5; this association stimulates PNPLA2 triglyceride hydrolase activity. Interacts with SERPINF1; this interaction stimulates the phospholipase A2 activity of PNPLA2. Despite a colocalization in lipid droplets, it probably does not interact with PLIN. Interacts with PLIN5; prevents interaction with ABHD5. Interacts with FAF2.
Subcellular location. Lipid droplet. Cell membrane. Cytoplasm.
Tissue specificity. Highest expression in adipose tissue. Also detected in heart, skeletal muscle, and portions of the gastrointestinal tract. Detected in normal retina and retinoblastoma cells. Detected in retinal pigment epithelium and, at lower intensity, in the inner segments of photoreceptors and in the ganglion cell layer of the neural retina (at protein level).
Post-translational modifications. Phosphorylation at Ser-404 by PKA is increased during fasting and moderate intensity exercise, and moderately increases lipolytic activity. Phosphorylation at Ser-404 is increased upon beta-adrenergic stimulation. Ubiquitinated by PEX2 in response to reactive oxygen species (ROS), leading to its degradation. Ubiquitination is stimulated by LDAH.
Disease relevance. Genetic variations in PNPLA2 may be associated with risk of diabetes mellitus type 2. Neutral lipid storage disease with myopathy (NLSDM) [MIM:610717] Neutral lipid storage disorder (NLSD) with myopathy but without ichthyosis. NLSDs are characterized by the presence of triglyceride-containing cytoplasmic droplets in leukocytes and in other tissues, including bone marrow, skin, and muscle. Individuals with NLSDM did not show obesity, in spite of a defect in triglyceride degradation in fibroblasts and in marked triglyceride storage in liver, muscles, and other visceral cells. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. The triglyceride lipase activity is inhibited by BEL ((E)-6-(bromomethylene)-3-(1-naphthalenyl)-2H-tetrahydropyran-2-one), a suicide substrate inhibitor. No differences in the acylglycerol transacylase was detected in the presence or absence of ATP.
Pathway. Glycerolipid metabolism; triacylglycerol degradation.
Polymorphism. Genetic variations in PNPLA2 may influence plasma free fatty acids and triglycerides levels, and fasting glucose concentrations.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96AD5-1 | 1 | yes |
| Q96AD5-2 | 2 |
RefSeq proteins (1): NP_065109* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002641 | PNPLA_dom | Domain |
| IPR016035 | Acyl_Trfase/lysoPLipase | Homologous_superfamily |
| IPR033562 | PLPL | Family |
| IPR033903 | PNPLA2 | Domain |
Pfam: PF01734
Catalyzed reactions (Rhea), 12 shown:
- a triacylglycerol + H2O = a diacylglycerol + a fatty acid + H(+) (RHEA:12044)
- a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+) (RHEA:15801)
- a triacylglycerol + H2O = a 1,2-diacylglycerol + a fatty acid + H(+) (RHEA:35667)
- 2 1-(9Z-octadecenoyl)-glycerol = 1,2-di-(9Z-octadecenoyl)-glycerol + glycerol (RHEA:38323)
- 1-(9Z-octadecenoyl)-glycerol + 1,2-di-(9Z-octadecenoyl)-glycerol = 1,2,3-tri-(9Z-octadecenoyl)-glycerol + glycerol (RHEA:38327)
- 1-(9Z-octadecenoyl)-glycerol + 1,3-di-(9Z-octadecenoyl)-glycerol = 1,2,3-tri-(9Z-octadecenoyl)-glycerol + glycerol (RHEA:38331)
- 1,2-di-(9Z-octadecenoyl)-glycerol + (9Z)-octadecenoate + H(+) = 1,2,3-tri-(9Z-octadecenoyl)-glycerol + H2O (RHEA:38379)
- 1,2,3-tri-(9Z-octadecenoyl)-glycerol + H2O = 1,3-di-(9Z-octadecenoyl)-glycerol + (9Z)-octadecenoate + H(+) (RHEA:38387)
- 1,2,3-tri-(9Z-octadecenoyl)-glycerol + H2O = 2,3-di-(9Z)-octadecenoyl-sn-glycerol + (9Z)-octadecenoate + H(+) (RHEA:38391)
- 1,2,3-tri-(9Z)-hexadecenoylglycerol + H2O = 1,3-di-(9Z)-hexadecenoylglycerol + (9Z)-hexadecenoate + H(+) (RHEA:38395)
- 1,2,3-tri-(9Z)-hexadecenoylglycerol + H2O = 2,3-di-(9Z)-hexadecenoyl-sn-glycerol + (9Z)-hexadecenoate + H(+) (RHEA:38399)
- 1,2,3-tri-(9Z,12Z)-octadecadienoylglycerol + H2O = 1,3-di-(9Z,12Z)-octadecadienoylglycerol + (9Z,12Z)-octadecadienoate + H(+) (RHEA:38403)
UniProt features (35 total): sequence conflict 6, topological domain 5, transmembrane region 4, sequence variant 4, short sequence motif 3, modified residue 3, active site 2, mutagenesis site 2, chain 1, domain 1, region of interest 1, glycosylation site 1, cross-link 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96AD5-F1 | 72.56 | 0.36 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 47 (nucleophile); 166 (proton acceptor)
Post-translational modifications (4): 372, 404, 428, 92
Glycosylation sites (1): 39
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 47 | reduces rate of lipid hydrolysis; does not affect the localization around the rim of the adiposomes. |
| 92 | abolished ubiquitination by pex2. |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-1482883 | Acyl chain remodeling of DAG and TAG |
| R-HSA-381426 | Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
| R-HSA-8957275 | Post-translational protein phosphorylation |
| R-HSA-9841922 | MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis |
MSigDB gene sets: 320 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, GOBP_ACYLGLYCEROL_HOMEOSTASIS, GOBP_REGULATION_OF_LIPID_STORAGE, GOBP_REGULATION_OF_TRIGLYCERIDE_METABOLIC_PROCESS, GCANCTGNY_MYOD_Q6, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GOBP_REGULATION_OF_HORMONE_LEVELS, GOBP_RETINOL_METABOLIC_PROCESS, COUP_01, GOBP_LIPID_HOMEOSTASIS, GOBP_GLYCEROLIPID_METABOLIC_PROCESS, GTGCCTT_MIR506, MARTINEZ_RB1_TARGETS_UP, GOBP_REGULATION_OF_LIPID_METABOLIC_PROCESS, UEDA_PERIFERAL_CLOCK
GO Biological Process (17): diacylglycerol biosynthetic process (GO:0006651), phototransduction, visible light (GO:0007603), negative regulation of triglyceride storage (GO:0010891), positive regulation of triglyceride catabolic process (GO:0010898), triglyceride catabolic process (GO:0019433), lipid storage (GO:0019915), intracellular triglyceride homeostasis (GO:0035356), acylglycerol acyl-chain remodeling (GO:0036155), lipid homeostasis (GO:0055088), lipid droplet fusion (GO:0160077), lipid droplet disassembly (GO:1905691), retinoid metabolic process (GO:0001523), lipid metabolic process (GO:0006629), acylglycerol metabolic process (GO:0006639), lipid catabolic process (GO:0016042), lipid droplet organization (GO:0034389), retinol metabolic process (GO:0042572)
GO Molecular Function (9): lipoprotein lipase activity (GO:0004465), A2-type glycerophospholipase activity (GO:0004623), triacylglycerol lipase activity (GO:0004806), acylglycerol O-acyltransferase activity (GO:0016411), retinyl-palmitate esterase activity (GO:0050253), mono-olein transacylation activity (GO:0051264), diolein transacylation activity (GO:0051265), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (8): nucleoplasm (GO:0005654), cytoplasm (GO:0005737), endoplasmic reticulum lumen (GO:0005788), endoplasmic reticulum membrane (GO:0005789), lipid droplet (GO:0005811), cytosol (GO:0005829), plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Glycerophospholipid biosynthesis | 1 |
| Metabolism of proteins | 1 |
| Post-translational protein modification | 1 |
| Epigenetic regulation of adipogenesis genes by MLL3 and MLL4 complexes | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| carboxylic ester hydrolase activity | 3 |
| lipid droplet organization | 2 |
| acylglycerol O-acyltransferase activity | 2 |
| diacylglycerol metabolic process | 1 |
| acylglycerol biosynthetic process | 1 |
| phototransduction | 1 |
| detection of visible light | 1 |
| negative regulation of lipid storage | 1 |
| regulation of triglyceride storage | 1 |
| triglyceride storage | 1 |
| regulation of triglyceride catabolic process | 1 |
| triglyceride catabolic process | 1 |
| positive regulation of lipid catabolic process | 1 |
| positive regulation of triglyceride metabolic process | 1 |
| triglyceride metabolic process | 1 |
| acylglycerol catabolic process | 1 |
| nutrient storage | 1 |
| intracellular chemical homeostasis | 1 |
| triglyceride homeostasis | 1 |
| acylglycerol metabolic process | 1 |
| chemical homeostasis | 1 |
| organelle fusion | 1 |
| organelle disassembly | 1 |
| diterpenoid metabolic process | 1 |
| primary metabolic process | 1 |
| neutral lipid metabolic process | 1 |
| glycerolipid metabolic process | 1 |
| lipid metabolic process | 1 |
| catabolic process | 1 |
| organelle organization | 1 |
| retinoid metabolic process | 1 |
| primary alcohol metabolic process | 1 |
| hormone metabolic process | 1 |
| olefinic compound metabolic process | 1 |
| triacylglycerol lipase activity | 1 |
| glycerophospholipase activity | 1 |
| lipase activity | 1 |
| acyltransferase activity, transferring groups other than amino-acyl groups | 1 |
| retinol metabolic process | 1 |
Protein interactions and networks
STRING
1966 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PNPLA2 | ABHD5 | Q8WTS1 | 999 |
| PNPLA2 | PLIN5 | Q00G26 | 984 |
| PNPLA2 | LIPE | Q05469 | 968 |
| PNPLA2 | PLIN1 | O60240 | 943 |
| PNPLA2 | G0S2 | P27469 | 886 |
| PNPLA2 | PLIN2 | Q99541 | 850 |
| PNPLA2 | SREBF1 | P36956 | 846 |
| PNPLA2 | PLIN3 | O60664 | 829 |
| PNPLA2 | FAF2 | Q96CS3 | 819 |
| PNPLA2 | MGLL | Q99685 | 801 |
| PNPLA2 | DGAT1 | O75907 | 793 |
| PNPLA2 | UCP1 | P25874 | 770 |
| PNPLA2 | CIDEA | O60543 | 770 |
| PNPLA2 | PPARG | P37231 | 768 |
| PNPLA2 | PPARA | Q07869 | 768 |
IntAct
29 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EGFR | PNPLA2 | psi-mi:“MI:0915”(physical association) | 0.550 |
| ALOX5 | DDHD2 | psi-mi:“MI:0914”(association) | 0.530 |
| GIMAP2 | STOM | psi-mi:“MI:0914”(association) | 0.530 |
| SMAD9 | PNPLA2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| UBE2R2 | PNPLA2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PNPLA2 | PEX14 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM223 | psi-mi:“MI:0914”(association) | 0.350 | |
| PTGES3 | SBNO1 | psi-mi:“MI:0914”(association) | 0.350 |
| SCGB2A2 | RTL8C | psi-mi:“MI:0914”(association) | 0.350 |
| ZHX1-C8orf76 | FANCG | psi-mi:“MI:0914”(association) | 0.350 |
| G0S2 | OIP5 | psi-mi:“MI:0914”(association) | 0.350 |
| B4GALT2 | LENG9 | psi-mi:“MI:0914”(association) | 0.350 |
| PLEKHG7 | MROH6 | psi-mi:“MI:0914”(association) | 0.350 |
| D2HGDH | ZSWIM8 | psi-mi:“MI:0914”(association) | 0.350 |
| SULT1C4 | ZSWIM8 | psi-mi:“MI:0914”(association) | 0.350 |
| SF3B3 | MYO9A | psi-mi:“MI:0914”(association) | 0.350 |
| CIAO2A | psi-mi:“MI:0914”(association) | 0.350 | |
| F12 | psi-mi:“MI:0914”(association) | 0.350 | |
| CTAG1A | PER1 | psi-mi:“MI:0914”(association) | 0.350 |
| G0S2 | UGT8 | psi-mi:“MI:0914”(association) | 0.350 |
| ASB14 | TOMM40 | psi-mi:“MI:0914”(association) | 0.350 |
| FKBP5 | EL52 | psi-mi:“MI:0914”(association) | 0.350 |
| ppk | PNPLA2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| PHYHIP | PNPLA2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| MARK3 | PNPLA2 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (69): ABHD5 (FRET), PNPLA2 (PCA), PNPLA2 (Affinity Capture-Western), PNPLA2 (Affinity Capture-MS), PEX14 (Affinity Capture-MS), TXNRD2 (Affinity Capture-MS), C19orf52 (Affinity Capture-MS), PNPLA2 (Affinity Capture-Western), RFWD2 (Affinity Capture-Western), PNPLA2 (Affinity Capture-RNA), PNPLA2 (Two-hybrid), PNPLA2 (Two-hybrid), PNPLA2 (Affinity Capture-MS), PNPLA2 (Affinity Capture-MS), PNPLA2 (Affinity Capture-MS)
ESM2 similar proteins: A3KN25, B6CZ46, O70418, O75783, O89047, O95838, P0C548, P20350, P29597, P35125, P41234, P49897, P49898, P58872, P58873, P86243, Q08755, Q08DF2, Q15477, Q2KI18, Q3U1Y4, Q3V016, Q4R6Y5, Q5XIL6, Q6GPH6, Q6QN11, Q80Y86, Q810M5, Q8BJ56, Q8BSD4, Q8CFA6, Q8CIP5, Q8CJI3, Q8K0H7, Q8NE63, Q8NFK1, Q8TD08, Q8VC82, Q8WP28, Q8WVZ1
Diamond homologs: P0C548, P41247, Q11186, Q2KI18, Q32LZ8, Q3V1D5, Q7Z6Z6, Q8BJ56, Q8N8W4, Q91WW7, Q96AD5, Q9NST1
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
640 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 29 |
| Likely pathogenic | 6 |
| Uncertain significance | 286 |
| Likely benign | 242 |
| Benign | 18 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1071091 | NM_020376.4(PNPLA2):c.999del (p.Ala333_Met334insTer) | Pathogenic |
| 1454498 | NM_020376.4(PNPLA2):c.903del (p.Ala302fs) | Pathogenic |
| 1454689 | NM_020376.4(PNPLA2):c.440del (p.Phe147fs) | Pathogenic |
| 1456930 | NM_020376.4(PNPLA2):c.856_877del (p.Asp286fs) | Pathogenic |
| 1873 | NM_020376.4(PNPLA2):c.808del (p.His270fs) | Pathogenic |
| 1874 | NM_020376.4(PNPLA2):c.584C>T (p.Pro195Leu) | Pathogenic |
| 1875 | NM_020376.4(PNPLA2):c.847del (p.Gln283fs) | Pathogenic |
| 1876 | NM_020376.4(PNPLA2):c.865C>T (p.Gln289Ter) | Pathogenic |
| 2735395 | NM_020376.4(PNPLA2):c.231_232insGGGTGGAGACGGGGTTTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGCGAGTGATCCGCCAGCCTCGNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAGAGGCCCGG (p.Lys78delinsGlyTrpArgArgGlyPheAlaValLeuAlaGlyLeuValSerSerSerTer) | Pathogenic |
| 2757371 | NM_020376.4(PNPLA2):c.63C>G (p.Tyr21Ter) | Pathogenic |
| 2900685 | NM_020376.4(PNPLA2):c.245G>A (p.Gly82Asp) | Pathogenic |
| 3256770 | NM_020376.4(PNPLA2):c.24G>A (p.Trp8Ter) | Pathogenic |
| 3626964 | NM_020376.4(PNPLA2):c.1105C>T (p.Gln369Ter) | Pathogenic |
| 3651821 | NM_020376.4(PNPLA2):c.875del (p.Gly292fs) | Pathogenic |
| 3721929 | NM_020376.4(PNPLA2):c.132C>G (p.Tyr44Ter) | Pathogenic |
| 39865 | NM_020376.4(PNPLA2):c.757+2T>C | Pathogenic |
| 39866 | NM_020376.4(PNPLA2):c.749A>C (p.Gln250Pro) | Pathogenic |
| 39867 | NM_020376.4(PNPLA2):c.757+1G>T | Pathogenic |
| 39868 | NM_020376.4(PNPLA2):c.467del (p.Pro156fs) | Pathogenic |
| 4696746 | NM_020376.4(PNPLA2):c.695del (p.Leu232fs) | Pathogenic |
| 4748105 | NM_020376.4(PNPLA2):c.1094G>A (p.Trp365Ter) | Pathogenic |
| 4762000 | NC_000011.10:g.821628del | Pathogenic |
| 567557 | NM_020376.4(PNPLA2):c.1043del (p.Phe348fs) | Pathogenic |
| 65419 | NM_020376.4(PNPLA2):c.613dup (p.Leu205fs) | Pathogenic |
| 65420 | NM_020376.4(PNPLA2):c.543del (p.Ile182fs) | Pathogenic |
| 65421 | NM_020376.4(PNPLA2):c.475_478dup (p.Gln160fs) | Pathogenic |
| 663841 | NM_020376.4(PNPLA2):c.662G>C (p.Arg221Pro) | Pathogenic |
| 871450 | NM_020376.4(PNPLA2):c.799del (p.Ala267fs) | Pathogenic |
| 944262 | NM_020376.4(PNPLA2):c.798dup (p.Ala267fs) | Pathogenic |
| 1065631 | NM_020376.4(PNPLA2):c.758-1G>C | Likely pathogenic |
SpliceAI
1303 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:821623:CCCAG:C | acceptor_loss | 1.0000 |
| 11:821624:CCAGG:C | acceptor_loss | 1.0000 |
| 11:821625:CAG:C | acceptor_loss | 1.0000 |
| 11:821846:G:GT | donor_gain | 1.0000 |
| 11:821948:T:TA | acceptor_gain | 1.0000 |
| 11:822384:T:TA | acceptor_gain | 1.0000 |
| 11:822389:C:A | acceptor_gain | 1.0000 |
| 11:822391:T:TA | acceptor_gain | 1.0000 |
| 11:822392:G:A | acceptor_gain | 1.0000 |
| 11:822604:CTGG:C | donor_loss | 1.0000 |
| 11:822605:TGG:T | donor_loss | 1.0000 |
| 11:822607:G:GC | donor_loss | 1.0000 |
| 11:822607:G:GG | donor_gain | 1.0000 |
| 11:822608:T:A | donor_loss | 1.0000 |
| 11:822663:G:GT | donor_gain | 1.0000 |
| 11:823686:A:AG | acceptor_gain | 1.0000 |
| 11:823687:A:G | acceptor_gain | 1.0000 |
| 11:823688:C:G | acceptor_gain | 1.0000 |
| 11:823688:CCCCA:C | acceptor_loss | 1.0000 |
| 11:823689:CCCAG:C | acceptor_loss | 1.0000 |
| 11:823690:CCAG:C | acceptor_loss | 1.0000 |
| 11:823691:CAGG:C | acceptor_loss | 1.0000 |
| 11:823692:A:AC | acceptor_loss | 1.0000 |
| 11:823692:A:AG | acceptor_gain | 1.0000 |
| 11:823692:AG:A | acceptor_gain | 1.0000 |
| 11:823693:G:GT | acceptor_gain | 1.0000 |
| 11:823693:GG:G | acceptor_gain | 1.0000 |
| 11:823693:GGC:G | acceptor_gain | 1.0000 |
| 11:823693:GGCC:G | acceptor_gain | 1.0000 |
| 11:823693:GGCCT:G | acceptor_gain | 1.0000 |
AlphaMissense
3229 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:821793:T:C | L118P | 0.998 |
| 11:821976:T:C | F147L | 0.998 |
| 11:821978:C:A | F147L | 0.998 |
| 11:821978:C:G | F147L | 0.998 |
| 11:822400:T:G | Y164D | 0.998 |
| 11:822564:C:A | N218K | 0.998 |
| 11:822564:C:G | N218K | 0.998 |
| 11:823572:T:C | F248L | 0.998 |
| 11:823574:T:A | F248L | 0.998 |
| 11:823574:T:G | F248L | 0.998 |
| 11:819767:T:C | F17L | 0.997 |
| 11:819769:C:A | F17L | 0.997 |
| 11:819769:C:G | F17L | 0.997 |
| 11:819863:G:T | G49W | 0.997 |
| 11:821799:G:C | R120P | 0.997 |
| 11:821995:G:A | G153E | 0.997 |
| 11:822410:G:A | G167D | 0.997 |
| 11:822455:T:A | I182N | 0.997 |
| 11:822469:T:C | F187L | 0.997 |
| 11:822471:C:A | F187L | 0.997 |
| 11:822471:C:G | F187L | 0.997 |
| 11:822572:G:C | R221P | 0.997 |
| 11:823573:T:C | F248S | 0.997 |
| 11:819876:C:A | A53D | 0.996 |
| 11:821796:C:T | T119I | 0.996 |
| 11:821969:C:G | C144W | 0.996 |
| 11:821970:A:C | S145R | 0.996 |
| 11:821972:C:A | S145R | 0.996 |
| 11:821972:C:G | S145R | 0.996 |
| 11:822407:A:T | D166V | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000026225 (11:818762 T>G), RS1000058934 (11:824186 C>A,T), RS1000713953 (11:819468 G>A), RS1000810769 (11:819294 T>G), RS1001376421 (11:824412 A>G), RS1001814268 (11:820292 C>A,T), RS1002080938 (11:819564 G>A,C,T), RS1002325221 (11:825485 G>T), RS1002720793 (11:822096 A>G), RS1002748751 (11:817401 C>T), RS1003491901 (11:817074 A>C,G), RS1003642482 (11:822357 A>C,G), RS1004095811 (11:822060 G>T), RS1004102743 (11:817225 G>A,C,T), RS1004118993 (11:822137 C>A,T)
Disease associations
OMIM: gene MIM:609059 | disease phenotypes: MIM:610717
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neutral lipid storage myopathy | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| neutral lipid storage myopathy | Definitive | AR |
Mondo (2): neutral lipid storage myopathy (MONDO:0012545), myopathy (MONDO:0005336)
Orphanet (1): Neutral lipid storage disease with myopathy (Orphanet:98908)
HPO phenotypes
71 total (30 of 71 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000252 | Microcephaly |
| HP:0000365 | Hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000467 | Neck muscle weakness |
| HP:0000478 | Abnormality of the eye |
| HP:0000819 | Diabetes mellitus |
| HP:0001082 | Cholecystitis |
| HP:0001249 | Intellectual disability |
| HP:0001252 | Hypotonia |
| HP:0001256 | Mild intellectual disability |
| HP:0001270 | Motor delay |
| HP:0001284 | Areflexia |
| HP:0001288 | Gait disturbance |
| HP:0001290 | Generalized hypotonia |
| HP:0001397 | Hepatic steatosis |
| HP:0001430 | Abnormal calf musculature morphology |
| HP:0001435 | Abnormality of the shoulder girdle musculature |
| HP:0001513 | Obesity |
| HP:0001635 | Congestive heart failure |
| HP:0001638 | Cardiomyopathy |
| HP:0001677 | Coronary artery atherosclerosis |
| HP:0001681 | Angina pectoris |
| HP:0001733 | Pancreatitis |
| HP:0001744 | Splenomegaly |
| HP:0001922 | Vacuolated lymphocytes |
| HP:0001962 | Palpitations |
| HP:0002094 | Dyspnea |
| HP:0002155 | Hypertriglyceridemia |
| HP:0002240 | Hepatomegaly |
GWAS associations
19 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST007293_140 | Body fat distribution (arm fat ratio) | 9.000000e-07 |
| GCST007293_42 | Body fat distribution (arm fat ratio) | 7.000000e-11 |
| GCST007293_98 | Body fat distribution (arm fat ratio) | 2.000000e-07 |
| GCST009677_2 | Keratoconus | 5.000000e-11 |
| GCST010242_132 | HDL cholesterol levels | 2.000000e-12 |
| GCST012226_337 | Waist circumference adjusted for body mass index | 2.000000e-08 |
| GCST012228_402 | Waist-hip index | 1.000000e-09 |
| GCST012228_403 | Waist-hip index | 3.000000e-08 |
| GCST012230_75 | Waist-to-hip ratio adjusted for BMI | 2.000000e-09 |
| GCST012231_104 | A body shape index | 7.000000e-09 |
| GCST90013442_17 | Keratoconus | 1.000000e-26 |
| GCST90020024_375 | A body shape index | 3.000000e-08 |
| GCST90020024_376 | A body shape index | 4.000000e-09 |
| GCST90020025_1186 | Waist-to-hip ratio adjusted for BMI | 4.000000e-09 |
| GCST90020025_1187 | Waist-to-hip ratio adjusted for BMI | 5.000000e-17 |
| GCST90020026_782 | Hip index | 6.000000e-09 |
| GCST90020027_1438 | Waist-hip index | 2.000000e-09 |
| GCST90020027_1439 | Waist-hip index | 7.000000e-17 |
| GCST90020028_784 | Hip circumference adjusted for BMI | 9.000000e-09 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004341 | body fat distribution |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0008039 | BMI-adjusted hip circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3822353 (SINGLE PROTEIN), CHEMBL5483085 (PROTEIN-PROTEIN INTERACTION)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Hydrolases & Lipases
Most potent curated ligand interactions (3 total), top 3:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| pigment epithelium-derived factor | Binding | 8.52 | pKd |
| PDEF(98-114)H105A | Binding | 7.15 | pKd |
| atglistatin | Inhibition | 6.15 | pIC50 |
ChEMBL bioactivities
3 potent at pChembl≥5 of 3 total, top 3 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.77 | Ki | 0.017 | nM | CHEMBL2048872 |
| 7.51 | Ki | 31 | nM | NUCIFERINE |
| 6.16 | IC50 | 700 | nM | CHEMBL3823931 |
PubChem BioAssay actives
3 with measured affinity, of 44 total; 3 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (5Z)-5-[[2-[(3R)-3-aminopiperidin-1-yl]-3-phenylphenyl]methylidene]-1,3-thiazolidine-2,4-dione | 2074092: Inhibition of ATGL ubiquitination in human HepG2 cells assessed as inhibition constant | ki | <0.0001 | uM |
| (6aR)-1,2-dimethoxy-6-methyl-5,6,6a,7-tetrahydro-4H-dibenzo[de,g]quinoline | 2074092: Inhibition of ATGL ubiquitination in human HepG2 cells assessed as inhibition constant | ki | 0.0310 | uM |
| 3-[3-[4-(dimethylamino)phenyl]phenyl]-1,1-dimethylurea | 1310988: Inhibition of ATGL (unknown origin) overexpressed in Escherichia coli XL-1 cells using [9,10-3H(N)]triolein as substrate incubated for 60 mins by liquid scintillation counting method | ic50 | 0.7000 | uM |
CTD chemical–gene interactions
60 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, increases expression | 3 |
| Air Pollutants | increases abundance, decreases expression, increases expression, affects expression | 3 |
| Benzo(a)pyrene | affects cotreatment, increases expression, decreases expression, decreases methylation | 3 |
| nuciferine | decreases expression, decreases reaction, increases expression | 2 |
| Dexamethasone | increases expression, affects cotreatment | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| afuresertib | increases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| bufotalin | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pirinixic acid | decreases expression, decreases localization, decreases reaction | 1 |
| benzo(b)fluoranthene | affects cotreatment, increases expression | 1 |
| bisphenol A | increases expression | 1 |
| tributyltin | affects cotreatment, increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| caryophyllene | increases expression | 1 |
| potassium chromate(VI) | increases expression, affects cotreatment | 1 |
| benz(a)anthracene | affects cotreatment, increases expression | 1 |
| chrysene | affects cotreatment, increases expression | 1 |
| 2-chloroethyl ethyl sulfide | affects binding, decreases reaction, increases expression | 1 |
| 1,3-dichloro-2-propanol | decreases expression, decreases localization, decreases reaction | 1 |
| dicyclohexyl phthalate | decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
| corosolic acid | increases expression | 1 |
| nickel acetate | affects expression | 1 |
| bisphenol B | increases expression | 1 |
ChEMBL screening assays
5 unique, capped per target: 5 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3826543 | Binding | Inhibition of ATGL (unknown origin) overexpressed in Escherichia coli XL-1 cells using [9,10-3H(N)]triolein as substrate incubated for 60 mins by liquid scintillation counting method | New Atglistatin closely related analogues: Synthesis and structure-activity relationship towards adipose triglyceride lipase inhibition. — Eur J Med Chem |
Cellosaurus cell lines
7 cell lines: 7 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E2GY | HAP1 PNPLA2 (-) 3 | Cancer cell line | Male |
| CVCL_E2GZ | HAP1 PNPLA2 (-) 4 | Cancer cell line | Male |
| CVCL_E2H0 | HAP1 PNPLA2 (-) 5 | Cancer cell line | Male |
| CVCL_E2H1 | HAP1 PNPLA2 (-) 6 | Cancer cell line | Male |
| CVCL_TE79 | HAP1 PNPLA2 (-) 1 | Cancer cell line | Male |
| CVCL_UJ32 | A549 ATGL-KO | Cancer cell line | Male |
| CVCL_XR69 | HAP1 PNPLA2 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
47 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00120055 | PHASE4 | COMPLETED | Association Between Systemic Exposure of Atorvastatin and Metabolites and Atorvastatin-induced Myotoxicity |
| NCT03633565 | PHASE4 | UNKNOWN | Comparative Study of Strategies for Management of Duchenne Myopathy (DM) |
| NCT01225614 | PHASE3 | UNKNOWN | Efficacy and Tolerance of Early Launching of Nocturnal Non Invasive |
| NCT00278564 | PHASE1 | TERMINATED | Stem Cell Transplantation in Idiopathic Inflammatory Myopathy Diseases |
| NCT02830763 | Not specified | TERMINATED | Clinical Study on the Safety of CNT-02 for TGCV and NLSD-M |
| NCT01642056 | PHASE1/PHASE2 | COMPLETED | EPI-743 for Metabolism or Mitochondrial Disorders |
| NCT02124070 | PHASE1/PHASE2 | WITHDRAWN | Therapeutic Effect of Recombinant Human Growth Hormone (rhGH) on the Myopathy of Cystinosis |
| NCT00549029 | Not specified | UNKNOWN | The Association of Genetic Polymorphisms With Statin-Induced Myopathy. |
| NCT00767130 | Not specified | UNKNOWN | DNA Diagnostic System for Statin Safety and Efficacy |
| NCT00922428 | Not specified | COMPLETED | PASCOE-Agil HOM-Injektopas in the Treatment of Rheumatic Disorders |
| NCT00937001 | Not specified | ACTIVE_NOT_RECRUITING | Critical Illness Myopathy as a Cause of Debilitating ICU-Acquired Weakness |
| NCT00990834 | Not specified | WITHDRAWN | Muscle Characteristics Associated With Statin Therapy |
| NCT01022450 | Not specified | UNKNOWN | Study of the Causes of the Breakdown of Muscle Fibers in Hospitalized Patients |
| NCT01040650 | Not specified | TERMINATED | Metabolic Features of Post-Myopathy Patients Associated With Statin Treatment |
| NCT01047163 | Not specified | COMPLETED | Maintenance of Muscle Mass in Older People: the Negative Impact of Statin Therapy |
| NCT01270269 | Not specified | COMPLETED | ACT-ICU Study: Activity and Cognitive Therapy in the Intensive Care Unit |
| NCT01353430 | Not specified | RECRUITING | Characterization of Inclusion Body Myopathy Associated With Paget’s Disease of Bone and Frontotemporal Dementia (IBMPFD) |
| NCT01395563 | Not specified | WITHDRAWN | Strength Training on Pancreatic Cancer |
| NCT01530841 | Not specified | COMPLETED | Efficacy and Tolerance of AVAPS Mode in Myotonic Dystrophy |
| NCT01547767 | Not specified | COMPLETED | Investigations Into ISCU Myopathy or Iron Sulfur Scaffold U Protein Myopathy |
| NCT01702987 | Not specified | COMPLETED | Evaluation of Ubiquinol on Mitochondrial Oxidative Capacity in Statin Patients Using 31PMRS |
| NCT01790178 | Not specified | COMPLETED | Ultrasound in Muscle Biopsy |
| NCT02011282 | Not specified | COMPLETED | Electro-Neuro-Muscular Stimulation in ICU |
| NCT02104921 | Not specified | COMPLETED | Innovative Ultrasound Technology in Neuromuscular Disease |
| NCT02118805 | Not specified | COMPLETED | Innovative Measures of Speech and Swallowing Dysfunction in Neurological Disorders |
| NCT02235220 | Not specified | UNKNOWN | Reduction of Masticatory Muscle Activity by Restoring Canine Guidance |
| NCT02247895 | Not specified | TERMINATED | Treatment of Muscle Weakness in Critically Ill Patients |
| NCT02315339 | Not specified | TERMINATED | European Home Mechanical Ventilation Registry |
| NCT02442986 | Not specified | COMPLETED | Neurological Outcome in Surgical and Non-surgical Septic Patients |
| NCT02706314 | Not specified | COMPLETED | Impact of Human Blood Serum From Critically Ill Patients on Human Colon Neuronal Networks. |
| NCT02765828 | Not specified | COMPLETED | Identification of Tongue Involvement in Late-Onset Pompe Disease |
| NCT03042286 | Not specified | UNKNOWN | SAPhIRE Statin Adverse Drug Reaction |
| NCT03141749 | Not specified | COMPLETED | Venous Thromboembolism in DM1 |
| NCT03660969 | Not specified | ACTIVE_NOT_RECRUITING | Reliability of Cardiac Troponins for the Diagnosis of Myocardial Infarction in the Presence of Skeletal Muscle Disease |
| NCT03749538 | Not specified | RECRUITING | Acute Transcranial Direct Current Stimulation in Patients With Systemic Autoimmune Myopathies |
| NCT03751644 | Not specified | COMPLETED | Peripherical Neuromuscular Electrical Stimulation in Systemic Autoimmune Myopathies |
| NCT03998540 | Not specified | UNKNOWN | Improvement of DIAgnostic and Phenotype-genotype Correlation Studies in Patients With MYOpathy Suspected of TITinopathy |
| NCT04678635 | Not specified | RECRUITING | Chronic Transcranial Direct Current Stimulation in Patients With Systemic Autoimmune Myopathies |
| NCT04881214 | Not specified | UNKNOWN | COVID-19 Pneumonia: Pulmonary Physiology, Health-related Quality of Life and Benefit of a Rehabilitation Program |
| NCT04941079 | Not specified | UNKNOWN | Safety and Efficacy of Inactivated SARS-CoV-2 Vaccine in Immune-related Myopathy (Myasthenia Gravis and Inflammatory Myopathy) Patients :a Prospective Observational Study |
Related Atlas pages
- Associated diseases: neutral lipid storage myopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): keratoconus, myopathy, neutral lipid storage myopathy