PNPLA7
gene geneOn this page
Also known as FLJ43070FLJ31318FLJ44279RP11-48C7.2NTEL1NTE-R1
Summary
PNPLA7 (patatin like domain 7, lysophospholipase, HGNC:24768) is a protein-coding gene on chromosome 9q34.3, encoding Patatin-like phospholipase domain-containing protein 7 (Q6ZV29). Lysophospholipase which preferentially deacylates unsaturated lysophosphatidylcholine (C18:1), generating glycerophosphocholine.
Human patatin-like phospholipases, such as PNPLA7, have been implicated in regulation of adipocyte differentiation and have been induced by metabolic stimuli (Wilson et al., 2006 [PubMed 16799181]).
Source: NCBI Gene 375775 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 305 total — 1 pathogenic
- MANE Select transcript:
NM_001098537
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:24768 |
| Approved symbol | PNPLA7 |
| Name | patatin like domain 7, lysophospholipase |
| Location | 9q34.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ43070, FLJ31318, FLJ44279, RP11-48C7.2, NTEL1, NTE-R1 |
| Ensembl gene | ENSG00000130653 |
| Ensembl biotype | protein_coding |
| OMIM | 612122 |
| Entrez | 375775 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 7 protein_coding, 4 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000277531, ENST00000406427, ENST00000434090, ENST00000469998, ENST00000487228, ENST00000491019, ENST00000492278, ENST00000882823, ENST00000882824, ENST00000946237, ENST00000946238, ENST00000946239
RefSeq mRNA: 2 — MANE Select: NM_001098537
NM_001098537, NM_152286
CCDS: CCDS48070, CCDS7045
Canonical transcript exons
ENST00000406427 — 35 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001632700 | 137547585 | 137547659 |
| ENSE00001702376 | 137515379 | 137515519 |
| ENSE00002243053 | 137550168 | 137550402 |
| ENSE00003552023 | 137467317 | 137467473 |
| ENSE00003562030 | 137462685 | 137462833 |
| ENSE00003625081 | 137462179 | 137462331 |
| ENSE00003632418 | 137461931 | 137462041 |
| ENSE00003641880 | 137463415 | 137463531 |
| ENSE00003712640 | 137519917 | 137520043 |
| ENSE00003712792 | 137542642 | 137542801 |
| ENSE00003714463 | 137540642 | 137540722 |
| ENSE00003716436 | 137521636 | 137521716 |
| ENSE00003722033 | 137522729 | 137522857 |
| ENSE00003734544 | 137543432 | 137543572 |
| ENSE00003743310 | 137543724 | 137543815 |
| ENSE00003746608 | 137546830 | 137546909 |
| ENSE00003751818 | 137547309 | 137547396 |
| ENSE00003847419 | 137459952 | 137460476 |
| ENSE00003888834 | 137464340 | 137464456 |
| ENSE00003889317 | 137479056 | 137479238 |
| ENSE00003889903 | 137480312 | 137480480 |
| ENSE00003890621 | 137464126 | 137464195 |
| ENSE00003891286 | 137497187 | 137497310 |
| ENSE00003891737 | 137478034 | 137478152 |
| ENSE00003891835 | 137505983 | 137506083 |
| ENSE00003892761 | 137498114 | 137498245 |
| ENSE00003893027 | 137500691 | 137500896 |
| ENSE00003893138 | 137495033 | 137495146 |
| ENSE00003893193 | 137460634 | 137460737 |
| ENSE00003893725 | 137493013 | 137493082 |
| ENSE00003894029 | 137484587 | 137484736 |
| ENSE00003894224 | 137505614 | 137505760 |
| ENSE00003894584 | 137480960 | 137481023 |
| ENSE00003895616 | 137501650 | 137501727 |
| ENSE00003896148 | 137461536 | 137461620 |
Expression profiles
Bgee: expression breadth ubiquitous, 166 present calls, max score 89.31.
FANTOM5 (CAGE): breadth broad, TPM avg 1.4875 / max 54.2742, expressed in 464 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 103380 | 1.0065 | 385 |
| 103381 | 0.4810 | 249 |
Top tissues by expression
248 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left ovary | UBERON:0002119 | 89.31 | gold quality |
| body of pancreas | UBERON:0001150 | 88.77 | gold quality |
| apex of heart | UBERON:0002098 | 88.64 | gold quality |
| body of stomach | UBERON:0001161 | 88.39 | gold quality |
| right uterine tube | UBERON:0001302 | 88.22 | gold quality |
| skin of abdomen | UBERON:0001416 | 87.87 | gold quality |
| right ovary | UBERON:0002118 | 87.75 | gold quality |
| skin of leg | UBERON:0001511 | 87.60 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 87.43 | gold quality |
| mucosa of stomach | UBERON:0001199 | 87.35 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 87.17 | gold quality |
| gastrocnemius | UBERON:0001388 | 86.85 | gold quality |
| right lobe of liver | UBERON:0001114 | 86.64 | gold quality |
| muscle of leg | UBERON:0001383 | 86.18 | gold quality |
| endocervix | UBERON:0000458 | 85.97 | gold quality |
| thyroid gland | UBERON:0002046 | 85.96 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 85.68 | gold quality |
| right frontal lobe | UBERON:0002810 | 85.58 | gold quality |
| minor salivary gland | UBERON:0001830 | 85.44 | gold quality |
| zone of skin | UBERON:0000014 | 84.68 | gold quality |
| body of uterus | UBERON:0009853 | 84.66 | gold quality |
| fundus of stomach | UBERON:0001160 | 84.57 | gold quality |
| right coronary artery | UBERON:0001625 | 84.51 | gold quality |
| prostate gland | UBERON:0002367 | 84.24 | gold quality |
| stomach | UBERON:0000945 | 84.01 | gold quality |
| sural nerve | UBERON:0015488 | 83.89 | gold quality |
| transverse colon | UBERON:0001157 | 83.81 | gold quality |
| adenohypophysis | UBERON:0002196 | 83.67 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 83.45 | gold quality |
| nucleus accumbens | UBERON:0001882 | 83.15 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 4.42 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
23 targeting PNPLA7, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-6798-5P | 100.00 | 65.77 | 699 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-4690-5P | 99.65 | 66.24 | 813 |
| HSA-MIR-6132 | 99.60 | 65.83 | 1554 |
| HSA-MIR-6836-5P | 99.60 | 65.62 | 1538 |
| HSA-MIR-6722-3P | 99.45 | 67.62 | 1919 |
| HSA-MIR-328-5P | 99.08 | 64.65 | 1000 |
| HSA-MIR-3619-5P | 99.00 | 68.87 | 2308 |
| HSA-MIR-214-3P | 98.71 | 68.12 | 2128 |
| HSA-MIR-761 | 98.71 | 68.07 | 2051 |
| HSA-MIR-6885-5P | 98.71 | 64.33 | 902 |
| HSA-MIR-3158-3P | 98.45 | 64.25 | 560 |
| HSA-MIR-5008-5P | 98.42 | 65.87 | 1019 |
| HSA-MIR-4436B-3P | 98.25 | 65.26 | 1494 |
| HSA-MIR-6735-5P | 98.24 | 65.36 | 1488 |
| HSA-MIR-7843-5P | 98.12 | 65.26 | 1421 |
| HSA-MIR-4632-5P | 97.82 | 65.38 | 1470 |
| HSA-MIR-6879-5P | 97.77 | 65.52 | 1521 |
| HSA-MIR-3127-5P | 97.52 | 65.24 | 786 |
| HSA-MIR-3918 | 96.13 | 64.65 | 1300 |
Literature-anchored findings (GeneRIF, showing 6)
- We explored Single Nucleotide Polymorphism in the PNPLA7 gene on chromosome 9 and investigated their correlation with the susceptibility to menstrual disorder. (PMID:25867316)
- PNPLA7 acts as an endoplasmic reticulum -anchored lysophosphatidylcholine hydrolase that is composed of specific functional domains mediating catalytic activity, subcellular positioning, and interactions with cellular organelles. (PMID:28887301)
- The Patatin-Like Phospholipase Domain Containing Protein 7 Facilitates VLDL Secretion by Modulating ApoE Stability. (PMID:32103509)
- The Patatin-Like Phospholipase Domain Containing Protein 7 Regulates Macrophage Classical Activation through SIRT1/NF-kappaB and p38 MAPK Pathways. (PMID:36499308)
- The Lysophospholipase PNPLA7 Controls Hepatic Choline and Methionine Metabolism. (PMID:36979406)
- The phospholipase PNPLA7 functions as a positive indicator in human colorectal and gastric cancers. (PMID:37861523)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | pnpla7b | ENSDARG00000040002 |
| danio_rerio | pnpla7a | ENSDARG00000062986 |
| mus_musculus | Pnpla7 | ENSMUSG00000036833 |
| rattus_norvegicus | Pnpla7 | ENSRNOG00000008190 |
| drosophila_melanogaster | sws | FBGN0003656 |
| caenorhabditis_elegans | WBGENE00022718 |
Paralogs (1): PNPLA6 (ENSG00000032444)
Protein
Protein identifiers
Patatin-like phospholipase domain-containing protein 7 — Q6ZV29 (reviewed: Q6ZV29)
All UniProt accessions (2): Q6ZV29, F2Z2D4
UniProt curated annotations — full annotation on UniProt →
Function. Lysophospholipase which preferentially deacylates unsaturated lysophosphatidylcholine (C18:1), generating glycerophosphocholine. Also can deacylate, to a lesser extent, lysophosphatidylethanolamine (C18:1), lysophosphatidyl-L-serine (C18:1) and lysophosphatidic acid (C16:0).
Subcellular location. Endoplasmic reticulum membrane. Lipid droplet.
Domain organisation. The 3 cNMP binding domains are required for localization to the endoplasmic reticulum. The cNMP binding domain 3 is involved in the binding to lipid droplets.
Similarity. Belongs to the NTE family.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6ZV29-1 | 1 | yes |
| Q6ZV29-2 | 2 | |
| Q6ZV29-3 | 3 | |
| Q6ZV29-4 | 4 | |
| Q6ZV29-5 | 5 |
RefSeq proteins (2): NP_001092007, NP_689499 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000595 | cNMP-bd_dom | Domain |
| IPR002641 | PNPLA_dom | Domain |
| IPR014710 | RmlC-like_jellyroll | Homologous_superfamily |
| IPR016035 | Acyl_Trfase/lysoPLipase | Homologous_superfamily |
| IPR018490 | cNMP-bd_dom_sf | Homologous_superfamily |
| IPR050301 | NTE | Family |
| IPR056556 | NTE1_P-loop_dom | Domain |
Pfam: PF00027, PF01734, PF24179
Catalyzed reactions (Rhea), 6 shown:
- a 1-acyl-sn-glycero-3-phosphocholine + H2O = sn-glycerol 3-phosphocholine + a fatty acid + H(+) (RHEA:15177)
- 1-hexadecanoyl-sn-glycero-3-phosphocholine + H2O = sn-glycerol 3-phosphocholine + hexadecanoate + H(+) (RHEA:40435)
- 1-(9Z-octadecenoyl)-sn-glycero-3-phospho-L-serine + H2O = sn-glycero-3-phospho-L-serine + (9Z)-octadecenoate + H(+) (RHEA:40499)
- 1-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine + H2O = sn-glycerol 3-phosphocholine + (9Z)-octadecenoate + H(+) (RHEA:40807)
- 1-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = sn-glycero-3-phosphoethanolamine + (9Z)-octadecenoate + H(+) (RHEA:40895)
- 1-hexadecanoyl-sn-glycero-3-phosphate + H2O = sn-glycerol 3-phosphate + hexadecanoate + H(+) (RHEA:49092)
UniProt features (49 total): sequence variant 11, sequence conflict 11, splice variant 6, region of interest 4, short sequence motif 3, binding site 3, modified residue 3, topological domain 2, active site 2, chain 1, compositionally biased region 1, transmembrane region 1, domain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6ZV29-F1 | 71.39 | 0.21 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 961 (nucleophile); 1081 (proton acceptor)
Ligand- & substrate-binding residues (3): 145–272; 458–563; 591–696
Post-translational modifications (3): 355, 1258, 1262
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-6814848 | Glycerophospholipid catabolism |
MSigDB gene sets: 154 (showing top):
GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, GOBP_PHOSPHATIDYLCHOLINE_METABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_GLYCEROLIPID_METABOLIC_PROCESS, KOYAMA_SEMA3B_TARGETS_UP, ROZANOV_MMP14_TARGETS_UP, ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_DN, GOBP_ORGANOPHOSPHATE_CATABOLIC_PROCESS, GOBP_GLYCEROPHOSPHOLIPID_METABOLIC_PROCESS, GOBP_LIPID_METABOLIC_PROCESS, GOBP_GLYCEROPHOSPHOLIPID_CATABOLIC_PROCESS, GOBP_GLYCEROLIPID_CATABOLIC_PROCESS, GOBP_LIPID_CATABOLIC_PROCESS, GOBP_PHOSPHOLIPID_CATABOLIC_PROCESS, MILI_PSEUDOPODIA_CHEMOTAXIS_DN
GO Biological Process (3): phosphatidylcholine catabolic process (GO:0034638), lipid metabolic process (GO:0006629), lipid catabolic process (GO:0016042)
GO Molecular Function (2): phosphatidylcholine lysophospholipase A1 activity (GO:0004622), hydrolase activity (GO:0016787)
GO Cellular Component (4): endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), lipid droplet (GO:0005811), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| PI Metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| phosphatidylcholine metabolic process | 1 |
| glycerophospholipid catabolic process | 1 |
| primary metabolic process | 1 |
| lipid metabolic process | 1 |
| catabolic process | 1 |
| lysophospholipase A1 activity | 1 |
| catalytic activity | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| intracellular membraneless organelle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1536 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PNPLA7 | CALM1 | P02593 | 575 |
| PNPLA7 | PNPLA8 | Q9NP80 | 547 |
| PNPLA7 | PNPLA1 | Q8N8W4 | 531 |
| PNPLA7 | PNPLA2 | Q96AD5 | 418 |
| PNPLA7 | CHPT1 | Q8WUD6 | 395 |
| PNPLA7 | PNPLA5 | Q7Z6Z6 | 383 |
| PNPLA7 | PLA2G12B | Q9BX93 | 376 |
| PNPLA7 | DRAP1 | Q14919 | 375 |
| PNPLA7 | PLA2G4F | Q68DD2 | 370 |
| PNPLA7 | PLA2G4E | Q3MJ16 | 366 |
| PNPLA7 | CYP4F22 | Q6NT55 | 362 |
| PNPLA7 | PLA2G4C | Q9UP65 | 348 |
| PNPLA7 | ABHD6 | Q9BV23 | 341 |
| PNPLA7 | ABHD12 | Q8N2K0 | 341 |
| PNPLA7 | ABHD5 | Q8WTS1 | 336 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PNPLA7 | CENPB | psi-mi:“MI:0914”(association) | 0.350 |
| AFG2B | MMP24OS | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (11): RNF14 (Affinity Capture-Western), PNPLA7 (Affinity Capture-Western), PNPLA7 (Affinity Capture-RNA), HSPA8 (Affinity Capture-MS), SUN2 (Affinity Capture-MS), CENPB (Affinity Capture-MS), PNPLA6 (Affinity Capture-MS), PNPLA7 (Affinity Capture-MS), PNPLA7 (Cross-Linking-MS (XL-MS)), PNPLA7 (Affinity Capture-MS), PNPLA7 (Affinity Capture-RNA)
ESM2 similar proteins: A0A0D4BSN8, A0A1C5G2V9, A0A4R2TZQ0, A0A4V2JTK3, A2AJ88, A2WYE9, B3NY03, B4IL64, B4L535, B4M709, B4Q0P3, D2NS11, O04932, O22060, O52703, P0AE12, P0AE13, P0DV40, P31927, P31928, P48340, P49031, P54139, P55382, P65010, P69185, P69186, P84740, P84741, P84742, P84743, P9WL94, P9WL95, P9WL98, P9WL99, Q02331, Q0JGK4, Q43845, Q43876, Q5BK26
Diamond homologs: A1C9L6, A1D9Y2, A2AJ88, A2R350, A3LYZ4, A4QVZ8, A5DHA3, A5E708, B3MRI9, B3NY03, B4H3U8, B4IL64, B4JLX2, B4L535, B4M709, B4N1W9, B4Q0P3, B5DKS8, P0AFR0, P0AFR1, P0CP36, P0CP37, Q02331, Q04958, Q0CNC7, Q0UJ42, Q1DLC7, Q21534, Q2H0D3, Q2UDH2, Q3TRM4, Q4PF83, Q4WA15, Q5A368, Q5BAE9, Q5BK26, Q5RDS0, Q6BQK9, Q6CF18, Q6CWC2
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
305 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 247 |
| Likely benign | 25 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 563648 | GRCh37/hg19 9q34.3(chr9:140366594-141020389)x1 | Pathogenic |
SpliceAI
8198 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:137460733:TTCGT:T | acceptor_gain | 1.0000 |
| 9:137460735:CGT:C | acceptor_gain | 1.0000 |
| 9:137460738:C:CC | acceptor_gain | 1.0000 |
| 9:137460745:C:CT | acceptor_gain | 1.0000 |
| 9:137460745:C:T | acceptor_gain | 1.0000 |
| 9:137460746:G:T | acceptor_gain | 1.0000 |
| 9:137461616:AGGAC:A | acceptor_gain | 1.0000 |
| 9:137461620:CCTA:C | acceptor_loss | 1.0000 |
| 9:137461621:C:CC | acceptor_gain | 1.0000 |
| 9:137461627:G:C | acceptor_gain | 1.0000 |
| 9:137461927:TCA:T | donor_loss | 1.0000 |
| 9:137461928:CA:C | donor_loss | 1.0000 |
| 9:137461929:A:AC | donor_gain | 1.0000 |
| 9:137461930:C:CC | donor_gain | 1.0000 |
| 9:137461930:CCGCA:C | donor_gain | 1.0000 |
| 9:137462038:CTTC:C | acceptor_gain | 1.0000 |
| 9:137462177:A:AC | donor_gain | 1.0000 |
| 9:137462178:C:CC | donor_gain | 1.0000 |
| 9:137462178:CG:C | donor_gain | 1.0000 |
| 9:137462283:C:CT | acceptor_gain | 1.0000 |
| 9:137462832:CG:C | acceptor_gain | 1.0000 |
| 9:137462834:C:CC | acceptor_gain | 1.0000 |
| 9:137484581:GCTTA:G | donor_loss | 1.0000 |
| 9:137484582:CTTA:C | donor_loss | 1.0000 |
| 9:137484583:TTA:T | donor_loss | 1.0000 |
| 9:137484584:TAC:T | donor_loss | 1.0000 |
| 9:137484585:A:AC | donor_gain | 1.0000 |
| 9:137484585:ACC:A | donor_loss | 1.0000 |
| 9:137484586:C:CC | donor_gain | 1.0000 |
| 9:137484586:C:CT | donor_loss | 1.0000 |
AlphaMissense
8713 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:137480389:A:G | W810R | 0.998 |
| 9:137480389:A:T | W810R | 0.998 |
| 9:137495103:G:T | A661D | 0.998 |
| 9:137505636:A:G | L459P | 0.997 |
| 9:137479192:A:G | L851P | 0.996 |
| 9:137484610:A:G | L750P | 0.996 |
| 9:137497263:A:G | L621P | 0.996 |
| 9:137497269:C:A | G619V | 0.996 |
| 9:137497269:C:T | G619D | 0.996 |
| 9:137500799:C:A | G525V | 0.996 |
| 9:137505648:G:T | A455D | 0.996 |
| 9:137479124:A:G | W874R | 0.995 |
| 9:137479124:A:T | W874R | 0.995 |
| 9:137495097:C:G | R663P | 0.995 |
| 9:137497260:C:G | R622P | 0.995 |
| 9:137521700:A:G | L273P | 0.995 |
| 9:137480365:C:G | A818P | 0.994 |
| 9:137480370:C:G | R816P | 0.994 |
| 9:137480387:C:A | W810C | 0.994 |
| 9:137480387:C:G | W810C | 0.994 |
| 9:137495092:A:G | S665P | 0.994 |
| 9:137497266:C:G | R620P | 0.994 |
| 9:137500718:A:G | L552P | 0.994 |
| 9:137500726:G:C | C549W | 0.994 |
| 9:137500869:C:A | G502W | 0.994 |
| 9:137521658:A:G | L287P | 0.994 |
| 9:137461583:G:T | A1240D | 0.993 |
| 9:137478061:G:T | A927D | 0.993 |
| 9:137480416:A:C | Y801D | 0.993 |
| 9:137493069:A:G | L689P | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000029510 (9:137502917 T>C), RS1000029641 (9:137493528 A>G), RS1000080034 (9:137472205 C>G), RS1000097915 (9:137504330 G>A,C), RS1000100004 (9:137471702 C>T), RS1000195380 (9:137545128 A>C,G), RS1000203833 (9:137486508 G>A), RS1000208874 (9:137509597 C>G,T), RS1000224306 (9:137480195 G>C), RS1000229680 (9:137491326 G>GA), RS1000267872 (9:137544903 C>T), RS1000267921 (9:137528701 C>A,G), RS1000293826 (9:137524091 C>A,T), RS1000300180 (9:137549045 G>A,C), RS1000303156 (9:137468920 C>A,T)
Disease associations
OMIM: gene MIM:612122 | disease phenotypes: MIM:618124, MIM:253250
GenCC curated gene-disease
Mondo (3): primary ovarian failure (MONDO:0005387), peripheral neuropathy, autosomal recessive, with or without impaired intellectual development (MONDO:0029131), mulibrey nanism (MONDO:0009664)
Orphanet (2): Mulibrey nanism (Orphanet:2576), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008156_127 | Hip circumference adjusted for BMI | 7.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D050336 | Mulibrey Nanism | C05.116.099.343.796; C16.320.240.875 |
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
34 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Acetaminophen | decreases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases expression | 2 |
| Nickel | decreases expression | 2 |
| Aflatoxin B1 | affects methylation, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| afuresertib | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| beta-lapachone | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| ferrous chloride | decreases expression | 1 |
| aflatoxin B2 | affects methylation | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| ICG 001 | increases expression | 1 |
| abrine | decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Arsenic | affects methylation | 1 |
| Atrazine | increases expression | 1 |
| Copper | decreases expression, affects cotreatment | 1 |
| Dichlorodiphenyl Dichloroethylene | decreases expression | 1 |
| Diazinon | increases methylation | 1 |
| Estradiol | decreases expression | 1 |
| N-Nitrosopyrrolidine | decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tunicamycin | increases expression | 1 |
Clinical trials (associated diseases)
75 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00417066 | PHASE4 | COMPLETED | Flexible GnRH Antagonist vs Flare up GnRH Agonist Protocol in Poor Responders |
| NCT00732693 | PHASE4 | COMPLETED | Evaluation of Physiologic and Standard Sex Steroid Replacement Regimens in Women With Premature Ovarian Failure |
| NCT00837616 | PHASE4 | COMPLETED | Estrogen Dosing in Turner Syndrome: Pharmacology and Metabolism |
| NCT01853501 | PHASE4 | UNKNOWN | Effects of ADSC Therapy in Women With POF |
| NCT02783937 | PHASE4 | COMPLETED | Filgrastim for Premature Ovarian Insufficiency |
| NCT03535480 | PHASE4 | UNKNOWN | Autologous Bone Marrow Stem Cell Ovarian Transplantation to Restore Ovarian Function in Premature Ovarian Failure |
| NCT00140998 | PHASE3 | COMPLETED | Estrogen Treatment (Oral vs. Patches) in Turner Syndrome |
| NCT00001951 | PHASE2 | COMPLETED | Hormone Replacement in Young Women With Premature Ovarian Failure |
| NCT00370019 | PHASE2 | WITHDRAWN | Effects of an Estrogen Replacement Therapy Skin Patch on Ovulation in Women With Premature Ovarian Failure |
| NCT00429494 | PHASE2 | COMPLETED | GnRH Analogue for Ovarian Function Preservation in Hematopoietic Stem Cell Transplantation Patients |
| NCT03816852 | PHASE2 | SUSPENDED | The Safety and Efficiency Study of Mesenchymal Stem Cell (19#iSCLife®-POI) in Premature Ovarian Insufficiency |
| NCT04536467 | PHASE2 | UNKNOWN | Prevention of Chemotherapy-Induced Ovarian Failure With Goserelin in Premenopausal Lymphoma Patients |
| NCT06117982 | PHASE2 | COMPLETED | The Impact of Granulocyte Colony Stimulating Factor on Premature Ovarian Insufficiency |
| NCT02912104 | PHASE1 | COMPLETED | A Therapeutic Trial of Human Amniotic Epithelial Cells Transplantation for Primary Ovarian Failure |
| NCT03178695 | PHASE1 | COMPLETED | Inovium Ovarian Rejuvenation Trials |
| NCT04815213 | PHASE1 | ACTIVE_NOT_RECRUITING | The Use of Expandeded Mesenchymal Stromal Cells (MSC) in Premature Ovarian Failure (POF) in Adult Humans |
| NCT05138367 | PHASE1 | COMPLETED | Effects of UCA-PSCs in Women With POF |
| NCT06132542 | PHASE1 | UNKNOWN | Autologous ADMSC Transplantation in Patients With POI |
| NCT00948857 | PHASE2/PHASE3 | TERMINATED | Dehydroepiandrosterone (DHEA) Treatment and Premature Ovarian Failure (POF) |
| NCT04031456 | PHASE2/PHASE3 | RECRUITING | Autologous PRP Infusion May Restore Ovarian Function and May Promote Folliculogenesis in POI Patients |
| NCT02043743 | PHASE1/PHASE2 | UNKNOWN | Autologous Stem Cells Transplantation in Patients With Idiopathic and Drug Induced Premature Ovarian Failure |
| NCT02062931 | PHASE1/PHASE2 | UNKNOWN | Autologous Mesenchymal Stem Cells Transplantation In Women With Premature Ovarian Failure |
| NCT02151890 | PHASE1/PHASE2 | COMPLETED | Pregnancy After Stem Cell Transplantation in Premature Ovarian Failure |
| NCT02372474 | PHASE1/PHASE2 | COMPLETED | It is a Real The First Baby Of Autologous Stem Cell Therapy in Premature Ovarian Failure |
| NCT02603744 | PHASE1/PHASE2 | UNKNOWN | Autologous Adipose Derived Mesenchymal Stromal Cells Transplantation in Women With Premature Ovarian Failure (POF) |
| NCT02644447 | PHASE1/PHASE2 | COMPLETED | Transplantation of HUC-MSCs With Injectable Collagen Scaffold for POF |
| NCT03069209 | PHASE1/PHASE2 | UNKNOWN | Autologous Bone Marrow-Derived Stem Cell Transplantation in Patients With Premature Ovarian Failure (POF) |
| NCT03985462 | PHASE1/PHASE2 | WITHDRAWN | Very Small Embryonic-like Stem Cells for Ovary |
| NCT04009473 | PHASE1/PHASE2 | UNKNOWN | Stem Cell Therapy and Growth Factor Ovarian in Vitro Activation |
| NCT04071574 | PHASE1/PHASE2 | COMPLETED | Comparative Study on the Efficacy of Ovarian Stimulation Protocols on the Success Rate of ICSI in Female Infertility |
| NCT04922398 | PHASE1/PHASE2 | UNKNOWN | Ovarian Injection of PRP (Platelet -Rich Plasma) Vs Normal Saline in Premature Ovarian Insufficiency |
| NCT05462379 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Autologous Heterotopic Fresh Ovarian Graft in Woman With LACC Eligible for Pelvic Radiotherapy Treatment. |
| NCT06202547 | PHASE1/PHASE2 | UNKNOWN | Intra-ovarian Injection of MSC-EVs in Idiopathic Premature Ovarian Failure |
| NCT01129947 | EARLY_PHASE1 | WITHDRAWN | The Use of DHEA in Women With Premature Ovarian Failure |
| NCT05522634 | EARLY_PHASE1 | UNKNOWN | A Clinical Study of Chinese Herbal Compound TJAOA101 in the Treatment of Premature Ovarian Insufficiency |
| NCT07308327 | EARLY_PHASE1 | ACTIVE_NOT_RECRUITING | The Influence of Gut Microbiota on Ovarian Function: A Single-center, Randomized,Double Blind, Parallel-controlled, Exploratory Clinical Trial |
| NCT00001275 | Not specified | COMPLETED | Ovarian Follicle Function in Patients With Primary Ovarian Failure |
| NCT00001306 | Not specified | COMPLETED | Steroid Therapy in Autoimmune Premature Ovarian Failure |
| NCT00006156 | Not specified | COMPLETED | Feasibility Study for Development of an Early Test for Ovarian Failure |
| NCT00119925 | Not specified | UNKNOWN | ‘SPRING’-Study: Subfertility Guidelines: Patient Related Implementation in the Netherlands Among Gynaecologists |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): mulibrey nanism, peripheral neuropathy, autosomal recessive, with or without impaired intellectual development