POF1B
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Also known as POFFLJ22792
Summary
POF1B (POF1B actin binding protein, HGNC:13711) is a protein-coding gene on chromosome Xq21.1, encoding Protein POF1B (Q8WVV4). Plays a key role in the organization of epithelial monolayers by regulating the actin cytoskeleton.
Premature ovarian failure (POF) is characterized by primary or secondary amenorrhea in women less than 40 years old. Two POF susceptibility regions called “POF1” and “POF2” have been identified by breakpoint mapping of X-autosome translocations. POF1 extends from Xq21-qter while POF2 extends from Xq13.3 to Xq21.1. This gene, POF1B, resides in the POF2 region. This gene is expressed at trace levels in mouse prenatal ovary and is barely detectable or absent from adult ovary, in human and in the mouse respectively. This gene’s expression is restricted to epithelia with its highest expression in the epidermis, and oro-pharyngeal and gastro-intestinal tracts. The protein encoded by this gene binds non-muscle actin filaments. The role this gene may play in the etiology of premature ovarian failure remains to be determined.
Source: NCBI Gene 79983 — RefSeq curated summary.
At a glance
- Gene–disease (curated): premature ovarian failure 2B (Moderate, GenCC)
- Clinical variants (ClinVar): 188 total
- Phenotypes (HPO): 9
- Druggable target: yes
- MANE Select transcript:
NM_024921
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:13711 |
| Approved symbol | POF1B |
| Name | POF1B actin binding protein |
| Location | Xq21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | POF, FLJ22792 |
| Ensembl gene | ENSG00000124429 |
| Ensembl biotype | protein_coding |
| OMIM | 300603 |
| Entrez | 79983 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 14 protein_coding
ENST00000262753, ENST00000373145, ENST00000871672, ENST00000871673, ENST00000871674, ENST00000871675, ENST00000871676, ENST00000871677, ENST00000871678, ENST00000871679, ENST00000871680, ENST00000871681, ENST00000871682, ENST00000871683
RefSeq mRNA: 2 — MANE Select: NM_024921
NM_001307940, NM_024921
CCDS: CCDS14452, CCDS78497
Canonical transcript exons
ENST00000262753 — 17 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000847197 | 85306181 | 85306333 |
| ENSE00000847198 | 85307163 | 85307276 |
| ENSE00000847199 | 85308124 | 85308216 |
| ENSE00000847201 | 85330949 | 85331079 |
| ENSE00000847202 | 85345860 | 85346042 |
| ENSE00000847203 | 85351350 | 85351451 |
| ENSE00000847204 | 85359550 | 85359630 |
| ENSE00000847205 | 85367692 | 85367766 |
| ENSE00001175251 | 85314432 | 85314506 |
| ENSE00001175260 | 85315707 | 85315734 |
| ENSE00001288883 | 85379639 | 85379665 |
| ENSE00002170891 | 85379173 | 85379495 |
| ENSE00003498250 | 85303406 | 85303488 |
| ENSE00003538354 | 85305791 | 85305910 |
| ENSE00003544526 | 85277396 | 85279426 |
| ENSE00003577867 | 85304343 | 85304471 |
| ENSE00003640772 | 85282203 | 85282317 |
Expression profiles
Bgee: expression breadth ubiquitous, 176 present calls, max score 96.72.
FANTOM5 (CAGE): breadth broad, TPM avg 2.6204 / max 294.5205, expressed in 329 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 199865 | 1.5897 | 255 |
| 199866 | 0.6571 | 221 |
| 199868 | 0.2128 | 123 |
| 199867 | 0.1607 | 78 |
Top tissues by expression
272 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| upper arm skin | UBERON:0004263 | 96.72 | gold quality |
| skin of leg | UBERON:0001511 | 96.36 | gold quality |
| skin of abdomen | UBERON:0001416 | 96.16 | gold quality |
| zone of skin | UBERON:0000014 | 95.85 | gold quality |
| rectum | UBERON:0001052 | 95.71 | gold quality |
| upper leg skin | UBERON:0004262 | 95.13 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 93.82 | gold quality |
| colonic mucosa | UBERON:0000317 | 93.70 | gold quality |
| skin of hip | UBERON:0001554 | 91.64 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 90.95 | gold quality |
| jejunal mucosa | UBERON:0000399 | 89.43 | gold quality |
| gingiva | UBERON:0001828 | 88.84 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 88.74 | gold quality |
| gingival epithelium | UBERON:0001949 | 88.15 | gold quality |
| buccal mucosa cell | CL:0002336 | 88.14 | gold quality |
| esophagus mucosa | UBERON:0002469 | 87.37 | gold quality |
| cervix epithelium | UBERON:0004801 | 87.14 | gold quality |
| duodenum | UBERON:0002114 | 87.04 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 86.60 | gold quality |
| squamous epithelium | UBERON:0006914 | 86.30 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 86.00 | gold quality |
| penis | UBERON:0000989 | 85.96 | gold quality |
| mammalian vulva | UBERON:0000997 | 84.82 | gold quality |
| amniotic fluid | UBERON:0000173 | 84.73 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 84.58 | gold quality |
| islet of Langerhans | UBERON:0000006 | 84.35 | gold quality |
| hair follicle | UBERON:0002073 | 82.97 | silver quality |
| oviduct epithelium | UBERON:0004804 | 82.04 | gold quality |
| transverse colon | UBERON:0001157 | 81.59 | gold quality |
| oral cavity | UBERON:0000167 | 81.28 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.68 |
| E-ENAD-27 | no | 3.38 |
| E-GEOD-99795 | no | 2.44 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): TP63
miRNA regulators (miRDB)
108 targeting POF1B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-4650-5P | 99.98 | 64.69 | 999 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
| HSA-MIR-6124 | 99.87 | 69.78 | 3551 |
Literature-anchored findings (GeneRIF, showing 4)
- Our findings could not demonstrate any involvement of POF1B in premature ovarian failure (PMID:15459172)
- The POF1B candidate gene for premature ovarian failure regulates epithelial polarity (PMID:21940798)
- POF1B was restricted to granular layers in human healthy epidermis, whereas it largely increased in hyperproliferative human skin diseases, thus demonstrating the localization of POF1B also in desmosomes of multistratified epithelia. (PMID:25084053)
- A novel POF1B variant in a Chinese patient is associated with premature ovarian failure. (PMID:34423420)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | pof1b | ENSDARG00000054060 |
| mus_musculus | Pof1b | ENSMUSG00000034607 |
| rattus_norvegicus | Pof1b | ENSRNOG00000004795 |
Protein
Protein identifiers
Protein POF1B — Q8WVV4 (reviewed: Q8WVV4)
Alternative names: Premature ovarian failure protein 1B
All UniProt accessions (1): Q8WVV4
UniProt curated annotations — full annotation on UniProt →
Function. Plays a key role in the organization of epithelial monolayers by regulating the actin cytoskeleton. May be involved in ovary development.
Subunit / interactions. Interacts with nonmuscle actin.
Subcellular location. Cell junction. Tight junction.
Disease relevance. Premature ovarian failure 2B (POF2B) [MIM:300604] An ovarian disorder defined as the cessation of ovarian function under the age of 40 years. It is characterized by oligomenorrhea or amenorrhea, in the presence of elevated levels of serum gonadotropins and low estradiol. The disease is caused by variants affecting the gene represented in this entry.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8WVV4-2 | 2 | yes |
| Q8WVV4-1 | 1 | |
| Q8WVV4-3 | 3 |
RefSeq proteins (2): NP_001294869, NP_079197* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR026186 | POF1B | Family |
| IPR056240 | POF1B_HlH | Domain |
Pfam: PF24617
UniProt features (15 total): sequence variant 8, splice variant 3, sequence conflict 2, chain 1, coiled-coil region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3BH9 | X-RAY DIFFRACTION | 1.7 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8WVV4-F1 | 62.59 | 0.35 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 143 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_MCMV_INFECTION_UP, GSE45365_NK_CELL_VS_CD8_TCELL_DN, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_EPITHELIAL_CELL_DEVELOPMENT, GOZGIT_ESR1_TARGETS_DN, GOBP_APICAL_JUNCTION_ASSEMBLY, RACCACAR_AML_Q6, GOBP_CELL_JUNCTION_ORGANIZATION, GOBP_ACTIN_FILAMENT_ORGANIZATION, RYTTCCTG_ETS2_B, AFFAR_YY1_TARGETS_DN, GOMF_ACTIN_BINDING, GOBP_CELL_JUNCTION_ASSEMBLY, GOBP_EPITHELIAL_CELL_MORPHOGENESIS, FUJII_YBX1_TARGETS_UP
GO Biological Process (4): epithelial cell morphogenesis (GO:0003382), actin filament organization (GO:0007015), actin cytoskeleton organization (GO:0030036), bicellular tight junction assembly (GO:0070830)
GO Molecular Function (3): actin filament binding (GO:0051015), actin binding (GO:0003779), protein binding (GO:0005515)
GO Cellular Component (5): actin filament (GO:0005884), adherens junction (GO:0005912), bicellular tight junction (GO:0005923), desmosome (GO:0030057), anchoring junction (GO:0070161)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell-cell junction | 2 |
| cell morphogenesis | 1 |
| epithelial cell development | 1 |
| actin cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| cytoskeleton organization | 1 |
| actin filament-based process | 1 |
| apical junction assembly | 1 |
| tight junction assembly | 1 |
| actin binding | 1 |
| protein-containing complex binding | 1 |
| cytoskeletal protein binding | 1 |
| binding | 1 |
| actin cytoskeleton | 1 |
| polymeric cytoskeletal fiber | 1 |
| apical junction complex | 1 |
| tight junction | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
768 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| POF1B | DIAPH2 | O60879 | 875 |
| POF1B | BMP15 | O95972 | 871 |
| POF1B | NOBOX | O60393 | 869 |
| POF1B | FIGLA | Q6QHK4 | 860 |
| POF1B | FOXL2 | P58012 | 752 |
| POF1B | FMR1 | Q06787 | 728 |
| POF1B | DACH2 | Q96NX9 | 669 |
| POF1B | ZNF711 | Q9Y462 | 643 |
| POF1B | SATL1 | Q86VE3 | 627 |
| POF1B | NR5A1 | Q13285 | 584 |
| POF1B | IDS | P22304 | 540 |
| POF1B | G5EA03 | G5EA03 | 500 |
| POF1B | APOOL | Q6UXV4 | 489 |
| POF1B | NXF5 | Q9H1B4 | 480 |
| POF1B | KIAA1191 | Q96A73 | 478 |
IntAct
169 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ASH2L | KMT2D | psi-mi:“MI:0914”(association) | 0.890 |
| CDK5 | FIBP | psi-mi:“MI:0914”(association) | 0.840 |
| LSMEM2 | STX7 | psi-mi:“MI:0914”(association) | 0.740 |
| JADE1 | KAT7 | psi-mi:“MI:0914”(association) | 0.720 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| POLR2L | RCCD1 | psi-mi:“MI:0914”(association) | 0.640 |
| CCNC | MED19 | psi-mi:“MI:0914”(association) | 0.640 |
| CETN1 | SFI1 | psi-mi:“MI:0914”(association) | 0.640 |
| CFAP298 | PEX7 | psi-mi:“MI:0914”(association) | 0.620 |
| FES | DSP | psi-mi:“MI:0914”(association) | 0.560 |
| FTH1 | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| TBC1D22B | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| GMCL1 | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| ZSCAN12 | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| CA8 | IGLL5 | psi-mi:“MI:0914”(association) | 0.530 |
| ZDHHC23 | GAPDHS | psi-mi:“MI:0914”(association) | 0.530 |
| NDUFS5 | NDUFS4 | psi-mi:“MI:0914”(association) | 0.530 |
| CCDC51 | TGM5 | psi-mi:“MI:0914”(association) | 0.530 |
| KIR3DS1 | PPL | psi-mi:“MI:0914”(association) | 0.530 |
| ACAD9 | PPL | psi-mi:“MI:0914”(association) | 0.530 |
| DTL | DNAJA2 | psi-mi:“MI:0914”(association) | 0.530 |
| PHAF1 | PSMG1 | psi-mi:“MI:0914”(association) | 0.530 |
| SPICE1 | SERPINB2 | psi-mi:“MI:0914”(association) | 0.530 |
| STK16 | FLG | psi-mi:“MI:0914”(association) | 0.530 |
| POMK | CLGN | psi-mi:“MI:0914”(association) | 0.530 |
| SGF29 | MATN2 | psi-mi:“MI:0914”(association) | 0.530 |
| E6 | CASK | psi-mi:“MI:0914”(association) | 0.520 |
| ESR1 | psi-mi:“MI:0914”(association) | 0.460 | |
| POF1B | PGK2 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (239): POF1B (Affinity Capture-MS), POF1B (Affinity Capture-MS), POF1B (Affinity Capture-MS), POF1B (Affinity Capture-MS), POF1B (Affinity Capture-MS), POF1B (Affinity Capture-MS), POF1B (Affinity Capture-MS), POF1B (Affinity Capture-MS), POF1B (Affinity Capture-MS), POF1B (Affinity Capture-MS), POF1B (Affinity Capture-MS), POF1B (Proximity Label-MS), POF1B (Affinity Capture-MS), POF1B (Affinity Capture-MS), POF1B (Affinity Capture-MS)
ESM2 similar proteins: A0A1L8GUX5, A0A1L8GXY6, A0A1W2P884, A3KNA5, A6PWD2, B8A5S6, H2MTR9, O35550, O35551, O60296, O94986, Q05D60, Q0VF96, Q15276, Q3MHH7, Q498G2, Q4KM62, Q4L180, Q4R703, Q5M9N0, Q5R829, Q5RBB5, Q5SZL2, Q5U4W1, Q6DIS8, Q6NRK1, Q6NRX3, Q6P2H3, Q6P402, Q6P6L0, Q6PD31, Q7T019, Q86SQ7, Q8BMK0, Q8BVC4, Q8CFC9, Q8CGZ2, Q8K4L4, Q8R2H7, Q8VC66
Diamond homologs: Q5RBB5, Q8K4L4, Q8WVV4
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
188 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 80 |
| Likely benign | 12 |
| Benign | 27 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2285 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:85282201:A:AC | donor_gain | 1.0000 |
| X:85282202:C:CC | donor_gain | 1.0000 |
| X:85282202:CA:C | donor_gain | 1.0000 |
| X:85282202:CACAA:C | donor_gain | 1.0000 |
| X:85303404:A:AC | donor_gain | 1.0000 |
| X:85303405:C:CC | donor_gain | 1.0000 |
| X:85303490:T:C | acceptor_gain | 1.0000 |
| X:85304353:CG:C | donor_gain | 1.0000 |
| X:85304467:TGGGA:T | acceptor_gain | 1.0000 |
| X:85304472:C:CC | acceptor_gain | 1.0000 |
| X:85305789:AC:A | donor_gain | 1.0000 |
| X:85305790:CC:C | donor_gain | 1.0000 |
| X:85306177:ATAC:A | donor_loss | 1.0000 |
| X:85306178:TA:T | donor_loss | 1.0000 |
| X:85306179:A:AT | donor_loss | 1.0000 |
| X:85306180:C:CG | donor_loss | 1.0000 |
| X:85306218:CGT:C | donor_gain | 1.0000 |
| X:85306330:CTTG:C | acceptor_gain | 1.0000 |
| X:85306331:TTG:T | acceptor_gain | 1.0000 |
| X:85306332:TG:T | acceptor_gain | 1.0000 |
| X:85306334:C:CC | acceptor_gain | 1.0000 |
| X:85306334:CT:C | acceptor_loss | 1.0000 |
| X:85306335:T:A | acceptor_loss | 1.0000 |
| X:85307157:GTTTA:G | donor_loss | 1.0000 |
| X:85307158:TTTAC:T | donor_loss | 1.0000 |
| X:85307159:TTAC:T | donor_loss | 1.0000 |
| X:85307160:TACC:T | donor_loss | 1.0000 |
| X:85307161:ACCTG:A | donor_loss | 1.0000 |
| X:85307162:CCTG:C | donor_gain | 1.0000 |
| X:85307162:CCTGC:C | donor_loss | 1.0000 |
AlphaMissense
3904 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| X:85331012:A:G | L264P | 0.997 |
| X:85282288:A:G | L560P | 0.996 |
| X:85304392:A:G | L506P | 0.996 |
| X:85305795:A:G | L478P | 0.996 |
| X:85314436:A:G | L318P | 0.996 |
| X:85314445:C:G | R315P | 0.994 |
| X:85308140:A:G | L345P | 0.993 |
| X:85308185:A:G | L330P | 0.993 |
| X:85330991:A:G | L271P | 0.993 |
| X:85307200:A:G | L376P | 0.992 |
| X:85306191:A:G | L436P | 0.991 |
| X:85308191:A:G | L328P | 0.991 |
| X:85308149:A:G | L342P | 0.990 |
| X:85308158:C:G | R339P | 0.990 |
| X:85282304:A:C | Y555D | 0.989 |
| X:85304350:T:G | Q520P | 0.989 |
| X:85308169:A:C | F335L | 0.988 |
| X:85308169:A:T | F335L | 0.988 |
| X:85308170:A:G | F335S | 0.988 |
| X:85308171:A:G | F335L | 0.988 |
| X:85308195:A:G | S327P | 0.988 |
| X:85331021:A:G | L261P | 0.988 |
| X:85331024:A:G | L260S | 0.988 |
| X:85282288:A:T | L560H | 0.987 |
| X:85282294:A:G | L558P | 0.987 |
| X:85282303:T:C | Y555C | 0.987 |
| X:85303484:A:G | L524P | 0.987 |
| X:85304380:A:G | L510P | 0.987 |
| X:85282297:A:G | I557T | 0.986 |
| X:85330979:A:G | L275S | 0.986 |
dbSNP variants (sampled 300 via entrez): RS1000092467 (X:85322275 T>C), RS1000162419 (X:85292531 T>C), RS1000173523 (X:85289648 A>G), RS1000297468 (X:85342075 A>C), RS1000319507 (X:85292818 C>T), RS1000352616 (X:85277978 A>G), RS1000360108 (X:85352627 A>C,G), RS1000422423 (X:85353607 A>G,T), RS1000435415 (X:85346268 T>G), RS1000463170 (X:85372147 A>G), RS1000464162 (X:85335996 A>C,G), RS1000551129 (X:85302472 C>T), RS1000557141 (X:85326547 G>T), RS1000560377 (X:85314664 A>G), RS1000602718 (X:85327765 A>C)
Disease associations
OMIM: gene MIM:300603 | disease phenotypes: MIM:300604
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| premature ovarian failure 2B | Moderate | X-linked |
Mondo (3): premature menopause (MONDO:0001119), premature ovarian failure 2B (MONDO:0010373), male infertility (MONDO:0005372)
Orphanet (0):
HPO phenotypes
9 total (9 of 9 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000164 | Abnormality of the dentition |
| HP:0000786 | Primary amenorrhea |
| HP:0000823 | Delayed puberty |
| HP:0000939 | Osteoporosis |
| HP:0001419 | X-linked recessive inheritance |
| HP:0008209 | Premature ovarian insufficiency |
| HP:0008222 | Female infertility |
| HP:0011462 | Young adult onset |
| HP:0034344 | Female-limited expression |
GWAS associations
0 associations (top):
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D007248 | Infertility, Male | C12.100.500.430; C12.100.750.700; C12.200.294.430 |
| D008594 | Menopause, Premature | C12.050.351.500.056.630.250; C12.100.250.056.630.250; G08.686.157.500.500; G08.686.841.249.500.500 |
| C564476 | Premature Ovarian Failure 2b (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067405 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.33 | Kd | 46.55 | nM | CHEMBL5653589 |
| 7.20 | ED50 | 63.44 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149030: Binding affinity to human POF1B incubated for 45 mins by Kinobead based pull down assay | kd | 0.0466 | uM |
CTD chemical–gene interactions
30 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression | 3 |
| sodium arsenite | decreases expression, increases expression | 2 |
| Estradiol | decreases expression, increases expression, affects cotreatment | 2 |
| urushiol | increases expression | 1 |
| glycidyl methacrylate | decreases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, decreases expression, increases expression | 1 |
| trichostatin A | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, affects response to substance, increases expression | 1 |
| pentanal | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | decreases expression | 1 |
| Air Pollutants | decreases expression | 1 |
| Allergens | increases abundance, increases expression, affects cotreatment | 1 |
| Vehicle Emissions | affects cotreatment, increases abundance, increases expression | 1 |
| Caffeine | increases phosphorylation | 1 |
| Dichlorodiphenyl Dichloroethylene | increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Furaldehyde | increases expression, affects cotreatment, affects localization, decreases expression | 1 |
| Lipopolysaccharides | affects response to substance, increases expression, affects cotreatment | 1 |
| Methotrexate | decreases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Sodium Chloride | affects cotreatment, decreases expression, affects localization, increases expression | 1 |
| Tetrachlorodibenzodioxin | increases expression | 1 |
| Palmitic Acid | decreases phosphorylation | 1 |
| Copper Sulfate | decreases expression | 1 |
| Particulate Matter | affects cotreatment, increases abundance, increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652072 | Binding | Binding affinity to human POF1B incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Clinical trials (associated diseases)
206 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00417066 | PHASE4 | COMPLETED | Flexible GnRH Antagonist vs Flare up GnRH Agonist Protocol in Poor Responders |
| NCT00732693 | PHASE4 | COMPLETED | Evaluation of Physiologic and Standard Sex Steroid Replacement Regimens in Women With Premature Ovarian Failure |
| NCT00837616 | PHASE4 | COMPLETED | Estrogen Dosing in Turner Syndrome: Pharmacology and Metabolism |
| NCT01853501 | PHASE4 | UNKNOWN | Effects of ADSC Therapy in Women With POF |
| NCT02783937 | PHASE4 | COMPLETED | Filgrastim for Premature Ovarian Insufficiency |
| NCT03535480 | PHASE4 | UNKNOWN | Autologous Bone Marrow Stem Cell Ovarian Transplantation to Restore Ovarian Function in Premature Ovarian Failure |
| NCT02202382 | PHASE4 | COMPLETED | Effects of Korean Red Ginseng on Male Infertility |
| NCT02204826 | PHASE4 | COMPLETED | Effects of Korean Red Ginseng on Semen Parameters in Male Infertility Patients: a Randomized, Placebo-controlled, Double-blind Clinical Study |
| NCT03802864 | PHASE4 | COMPLETED | Post-operative Pain Control of Testicular Sperm Extraction Using Liposomal Bupivacaine |
| NCT06100432 | PHASE4 | ACTIVE_NOT_RECRUITING | Effect of Eurycoma Longifolia (DLBS5055) and Multivitamins (Vitamin C+Vitamin E+ β-carotene) for Infertile Males |
| NCT07523022 | PHASE4 | ENROLLING_BY_INVITATION | Comparison of the Effect of Gonadotropin and Clomiphene Citrate Treatment on Sperm Parameters and the Outcome of Assisted Reproductive Procedures in Subfertile Men Based on the APHRODITE Groups |
| NCT00140998 | PHASE3 | COMPLETED | Estrogen Treatment (Oral vs. Patches) in Turner Syndrome |
| NCT00975117 | PHASE3 | COMPLETED | Spermotrend in the Treatment of Male Infertility |
| NCT01407432 | PHASE3 | COMPLETED | Impact of Folates in the Care of the Male Infertility |
| NCT01895816 | PHASE3 | COMPLETED | Herbal Tonic Fertile Supplement(ZO2C5) |
| NCT02605070 | PHASE3 | TERMINATED | Pilot Study on the Effects of FSH Treatment on the Epigenetic Characteristics of Spermatozoa in Infertile Patients With Severe Oligozoospermia |
| NCT07402759 | PHASE3 | ACTIVE_NOT_RECRUITING | Impact of tdrd9 Gene Mutations in the Therapeutic Response to L-carnitine in Oligoasthenozoospermic Men |
| NCT00001951 | PHASE2 | COMPLETED | Hormone Replacement in Young Women With Premature Ovarian Failure |
| NCT00370019 | PHASE2 | WITHDRAWN | Effects of an Estrogen Replacement Therapy Skin Patch on Ovulation in Women With Premature Ovarian Failure |
| NCT00429494 | PHASE2 | COMPLETED | GnRH Analogue for Ovarian Function Preservation in Hematopoietic Stem Cell Transplantation Patients |
| NCT03816852 | PHASE2 | SUSPENDED | The Safety and Efficiency Study of Mesenchymal Stem Cell (19#iSCLife®-POI) in Premature Ovarian Insufficiency |
| NCT04536467 | PHASE2 | UNKNOWN | Prevention of Chemotherapy-Induced Ovarian Failure With Goserelin in Premenopausal Lymphoma Patients |
| NCT06117982 | PHASE2 | COMPLETED | The Impact of Granulocyte Colony Stimulating Factor on Premature Ovarian Insufficiency |
| NCT01880086 | PHASE2 | COMPLETED | Clomiphene Citrate for the Treatment of Low Testosterone Associated With Chronic Opioid Pain Medication Administration |
| NCT02061384 | PHASE2 | COMPLETED | RA-2 13-cis Retinoic Acid (Isotretinoin) |
| NCT02421887 | PHASE2 | COMPLETED | Males, Antioxidants, and Infertility Trial |
| NCT05200663 | PHASE2 | UNKNOWN | Efficacy Comparison of Tamoxifen and Tamoxifen With Antioxidants on Semen Quality of Male With Idiopathic Infertility |
| NCT05290558 | PHASE2 | ACTIVE_NOT_RECRUITING | The Therapeutic Effects of Bu Shen Yi Jing Pill on Semen Quality in Sub Fertile Males: a Randomized Controlled Trial |
| NCT06091969 | PHASE2 | NOT_YET_RECRUITING | Supplementation for Male Subfertility |
| NCT02912104 | PHASE1 | COMPLETED | A Therapeutic Trial of Human Amniotic Epithelial Cells Transplantation for Primary Ovarian Failure |
| NCT03178695 | PHASE1 | COMPLETED | Inovium Ovarian Rejuvenation Trials |
| NCT04815213 | PHASE1 | ACTIVE_NOT_RECRUITING | The Use of Expandeded Mesenchymal Stromal Cells (MSC) in Premature Ovarian Failure (POF) in Adult Humans |
| NCT05138367 | PHASE1 | COMPLETED | Effects of UCA-PSCs in Women With POF |
| NCT06132542 | PHASE1 | UNKNOWN | Autologous ADMSC Transplantation in Patients With POI |
| NCT01595308 | PHASE1 | COMPLETED | A Pilot Study to Evaluate the Effect of Pomegranate Juice on Semen Parameters in Healthy Male Volunteers |
| NCT02122211 | PHASE1 | COMPLETED | Choline Dehydrogenase and Sperm Function: Effects of Betaine |
| NCT02575924 | PHASE1 | UNKNOWN | Influence of Culture Media on Clinical Outcomes in Poor Responders or Severe Male Infertility |
| NCT04009473 | PHASE1/PHASE2 | UNKNOWN | Stem Cell Therapy and Growth Factor Ovarian in Vitro Activation |
| NCT00948857 | PHASE2/PHASE3 | TERMINATED | Dehydroepiandrosterone (DHEA) Treatment and Premature Ovarian Failure (POF) |
| NCT04031456 | PHASE2/PHASE3 | RECRUITING | Autologous PRP Infusion May Restore Ovarian Function and May Promote Folliculogenesis in POI Patients |
Related Atlas pages
- Associated diseases: premature ovarian failure 2B
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): male infertility, premature menopause, premature ovarian failure 2B