POLE
gene geneOn this page
Also known as POLE1
Summary
POLE (DNA polymerase epsilon, catalytic subunit, HGNC:9177) is a protein-coding gene on chromosome 12q24.33, encoding DNA polymerase epsilon catalytic subunit A (Q07864). Catalytic component of the DNA polymerase epsilon complex. In precision oncology, POLE Mutation confers sensitivity to Pembrolizumab in Glioblastoma (CIViC Level C); 3 further curated variant–drug associations are listed below. It is a common-essential gene (DepMap: required in 99.8% of cancer cell lines).
This gene encodes the catalytic subunit of DNA polymerase epsilon. The enzyme is involved in DNA repair and chromosomal DNA replication. Mutations in this gene have been associated with colorectal cancer 12 and facial dysmorphism, immunodeficiency, livedo, and short stature.
Source: NCBI Gene 5426 — RefSeq curated summary.
At a glance
- Gene–disease (curated): POLE-related polyposis and colorectal cancer syndrome (Definitive, ClinGen) — +5 more curated relationships
- GWAS associations: 3
- Clinical variants (ClinVar): 11,128 total — 354 pathogenic, 128 likely-pathogenic (top 1% of genes corpus-wide)
- GTEx eGene: eQTL in 36 tissues, sQTL in 33 (q < 0.05)
- Phenotypes (HPO): 116
- Precision-oncology evidence (CIViC): 4 curated variant–drug associations
- Cancer driver (intOGen): activating (oncogene-like) across 2 cancer types (inferred from mutation patterns)
- Cancer dependency (DepMap): dependent in 99.8% of screened cell lines (common-essential)
- Dosage sensitivity (ClinGen): haploinsufficiency little evidence, triplosensitivity no evidence
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 0.75 (unconstrained)
- MANE Select transcript:
NM_006231 - Interaction hub: 2,173 STRING partners (top 6% of genes corpus-wide)
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9177 |
| Approved symbol | POLE |
| Name | DNA polymerase epsilon, catalytic subunit |
| Location | 12q24.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | POLE1 |
| Ensembl gene | ENSG00000177084 |
| Ensembl biotype | protein_coding |
| OMIM | 174762 |
| Entrez | 5426 |
Gene structure
Transcript identifiers
Ensembl transcripts: 26 — 10 retained_intron, 10 nonsense_mediated_decay, 4 protein_coding, 2 protein_coding_CDS_not_defined
MANE Select: ENST00000320574
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 3, TSL 2: 3, TSL 3: 5, TSL 4: 3, TSL 5: 3
ENST00000320574, ENST00000416953, ENST00000434528, ENST00000441786, ENST00000503265, ENST00000534922, ENST00000535270, ENST00000537064, ENST00000538196, ENST00000539215, ENST00000539357, ENST00000539618, ENST00000540987, ENST00000541627, ENST00000544414, ENST00000544870, ENST00000545015, ENST00000672002, ENST00000672742, ENST00000699981, ENST00000699982, ENST00000699983, ENST00000699984, ENST00000699985, ENST00000937600, ENST00001141704
RefSeq mRNA: 1 — MANE Select: NM_006231
NM_006231
CCDS: CCDS9278
Canonical transcript exons
ENST00000320574 — 49 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001221880 | 132676094 | 132676204 |
| ENSE00001221886 | 132676546 | 132676653 |
| ENSE00001221895 | 132677363 | 132677443 |
| ENSE00001221904 | 132677578 | 132677719 |
| ENSE00001221910 | 132679497 | 132679651 |
| ENSE00001221917 | 132679954 | 132680046 |
| ENSE00001221926 | 132680178 | 132680222 |
| ENSE00001221932 | 132680607 | 132680687 |
| ENSE00002699740 | 132687254 | 132687342 |
| ENSE00003469256 | 132642820 | 132642996 |
| ENSE00003471189 | 132681138 | 132681279 |
| ENSE00003474748 | 132643407 | 132643560 |
| ENSE00003481557 | 132623762 | 132624810 |
| ENSE00003484451 | 132632315 | 132632508 |
| ENSE00003493093 | 132642506 | 132642729 |
| ENSE00003498236 | 132675735 | 132675820 |
| ENSE00003501253 | 132667503 | 132667648 |
| ENSE00003505045 | 132638014 | 132638139 |
| ENSE00003505152 | 132643837 | 132643977 |
| ENSE00003530501 | 132657136 | 132657258 |
| ENSE00003531158 | 132643224 | 132643330 |
| ENSE00003538362 | 132668635 | 132668737 |
| ENSE00003540408 | 132664370 | 132664462 |
| ENSE00003548640 | 132641647 | 132641851 |
| ENSE00003555146 | 132624905 | 132624994 |
| ENSE00003574090 | 132673164 | 132673277 |
| ENSE00003581276 | 132672627 | 132672839 |
| ENSE00003582134 | 132665302 | 132665450 |
| ENSE00003596682 | 132639125 | 132639298 |
| ENSE00003598809 | 132660969 | 132661164 |
| ENSE00003607611 | 132673575 | 132673707 |
| ENSE00003608285 | 132657349 | 132657429 |
| ENSE00003612691 | 132642177 | 132642397 |
| ENSE00003621968 | 132675398 | 132675517 |
| ENSE00003627930 | 132625645 | 132625770 |
| ENSE00003637825 | 132664004 | 132664148 |
| ENSE00003639152 | 132661527 | 132661684 |
| ENSE00003639545 | 132649306 | 132649515 |
| ENSE00003646829 | 132668356 | 132668502 |
| ENSE00003652503 | 132668811 | 132668939 |
| ENSE00003654243 | 132659295 | 132659509 |
| ENSE00003655346 | 132632664 | 132632795 |
| ENSE00003666262 | 132626117 | 132626317 |
| ENSE00003673423 | 132634186 | 132634378 |
| ENSE00003674568 | 132635892 | 132636024 |
| ENSE00003684194 | 132648929 | 132649072 |
| ENSE00003691443 | 132672215 | 132672322 |
| ENSE00003726606 | 132657868 | 132657970 |
| ENSE00003730711 | 132649677 | 132649889 |
Expression profiles
Bgee: expression breadth ubiquitous, 221 present calls, max score 94.93.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 23.9565 / max 472.2981, expressed in 1770 samples.
Highest expression (Bgee): hemisphere of cerebellum, testis, cerebellar hemisphere, cerebellar cortex, sural nerve.
Genetic regulation across tissues (GTEx eQTL / sQTL)
POLE is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 36 tissues and its splicing (sQTL) in 33 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 69 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Brain Cerebellum | eqtl | 1.2e-97 | -1.19 | 12:132622323:T:C |
| Brain Cerebellar Hemisphere | eqtl | 5.2e-95 | -1.08 | 12:132622323:T:C |
| Muscle Skeletal | sqtl | 2.0e-60 | +0.91 | 12:132658746:T:G |
| Muscle Skeletal | eqtl | 3.9e-53 | -0.39 | 12:132659203:A:G |
| Brain Cerebellum | sqtl | 7.4e-53 | +1.47 | 12:132622323:T:C |
| Skin Sun Exposed Lower leg | sqtl | 8.5e-50 | -0.96 | 12:132676210:C:G |
| Testis | sqtl | 1.1e-49 | +1.33 | 12:132636864:C:T |
| Brain Frontal Cortex BA9 | eqtl | 1.3e-48 | +0.83 | 12:132682939:C:T |
| Brain Nucleus accumbens basal ganglia | eqtl | 4.7e-48 | -0.79 | 12:132629721:A:C |
| Skin Not Sun Exposed Suprapubic | sqtl | 3.9e-46 | -1.03 | 12:132660160:C:T |
| Adipose Subcutaneous | sqtl | 2.4e-44 | -0.88 | 12:132629709:A:G |
| Brain Cortex | eqtl | 1.2e-41 | -0.83 | 12:132667231:C:T |
| Brain Cerebellar Hemisphere | sqtl | 1.1e-35 | -1.48 | 12:132653619:C:T |
| Cells EBV-transformed lymphocytes | sqtl | 3.8e-32 | -1.08 | 12:132636864:C:T |
| Nerve Tibial | eqtl | 7.1e-31 | -0.28 | 12:132686336:C:G |
| Skin Not Sun Exposed Suprapubic | eqtl | 1.8e-29 | +0.26 | 12:132636864:C:T |
| Brain Caudate basal ganglia | eqtl | 1.1e-27 | -0.62 | 12:132667231:C:T |
| Nerve Tibial | sqtl | 3.7e-27 | +0.78 | 12:132676210:C:G |
| Artery Tibial | sqtl | 2.8e-25 | +0.77 | 12:132676210:C:G |
| Cells Cultured fibroblasts | sqtl | 7.8e-25 | +0.87 | 12:132685415:C:T |
FANTOM5 promoters
3 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 134223 | 23.4121 | 1763 |
| 134221 | 0.2800 | 122 |
| 134224 | 0.2644 | 103 |
Top tissues by expression
showing 100 of 267 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right hemisphere of cerebellum | UBERON:0014890 | 94.93 | gold quality |
| right testis | UBERON:0004534 | 94.74 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 94.70 | gold quality |
| left testis | UBERON:0004533 | 94.63 | gold quality |
| cerebellar cortex | UBERON:0002129 | 94.46 | gold quality |
| sural nerve | UBERON:0015488 | 93.00 | gold quality |
| cerebellum | UBERON:0002037 | 92.23 | gold quality |
| ventricular zone | UBERON:0003053 | 91.78 | gold quality |
| spleen | UBERON:0002106 | 91.10 | gold quality |
| testis | UBERON:0000473 | 91.02 | gold quality |
| endometrium epithelium | UBERON:0004811 | 90.13 | gold quality |
| skin of abdomen | UBERON:0001416 | 89.89 | gold quality |
| skin of leg | UBERON:0001511 | 89.80 | gold quality |
| ganglionic eminence | UBERON:0004023 | 89.56 | gold quality |
| right lobe of liver | UBERON:0001114 | 89.49 | gold quality |
| granulocyte | CL:0000094 | 88.98 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 88.29 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 87.92 | gold quality |
| mucosa of stomach | UBERON:0001199 | 87.83 | gold quality |
| body of stomach | UBERON:0001161 | 87.69 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 87.18 | gold quality |
| cortical plate | UBERON:0005343 | 87.07 | gold quality |
| transverse colon | UBERON:0001157 | 87.02 | gold quality |
| zone of skin | UBERON:0000014 | 86.82 | gold quality |
| bone marrow cell | CL:0002092 | 86.61 | gold quality |
| stomach | UBERON:0000945 | 86.47 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 86.20 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 86.17 | gold quality |
| left ovary | UBERON:0002119 | 86.09 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 85.83 | gold quality |
| lower esophagus | UBERON:0013473 | 85.81 | gold quality |
| right ovary | UBERON:0002118 | 85.49 | gold quality |
| esophagus | UBERON:0001043 | 85.35 | gold quality |
| small intestine | UBERON:0002108 | 85.31 | gold quality |
| esophagus mucosa | UBERON:0002469 | 85.20 | gold quality |
| popliteal artery | UBERON:0002250 | 85.16 | gold quality |
| tibial artery | UBERON:0007610 | 85.16 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 85.09 | gold quality |
| gastrocnemius | UBERON:0001388 | 85.08 | gold quality |
| left uterine tube | UBERON:0001303 | 85.04 | gold quality |
| muscle of leg | UBERON:0001383 | 85.00 | gold quality |
| ectocervix | UBERON:0012249 | 85.00 | gold quality |
| colonic epithelium | UBERON:0000397 | 84.96 | gold quality |
| apex of heart | UBERON:0002098 | 84.79 | gold quality |
| calcaneal tendon | UBERON:0003701 | 84.78 | gold quality |
| aorta | UBERON:0000947 | 84.77 | gold quality |
| paraflocculus | UBERON:0005351 | 84.75 | silver quality |
| tibial nerve | UBERON:0001323 | 84.70 | gold quality |
| body of pancreas | UBERON:0001150 | 84.66 | gold quality |
| body of uterus | UBERON:0009853 | 84.54 | gold quality |
| thoracic aorta | UBERON:0001515 | 84.51 | gold quality |
| ascending aorta | UBERON:0001496 | 84.49 | gold quality |
| minor salivary gland | UBERON:0001830 | 84.40 | gold quality |
| embryo | UBERON:0000922 | 84.15 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 83.95 | gold quality |
| rectum | UBERON:0001052 | 83.44 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 83.42 | gold quality |
| colon | UBERON:0001155 | 83.23 | gold quality |
| intestine | UBERON:0000160 | 83.22 | gold quality |
| metanephros cortex | UBERON:0010533 | 83.06 | gold quality |
| bone marrow | UBERON:0002371 | 82.98 | gold quality |
| endocervix | UBERON:0000458 | 82.96 | gold quality |
| left coronary artery | UBERON:0001626 | 82.68 | gold quality |
| fundus of stomach | UBERON:0001160 | 82.61 | gold quality |
| large intestine | UBERON:0000059 | 82.52 | gold quality |
| upper lobe of lung | UBERON:0008948 | 82.52 | gold quality |
| omental fat pad | UBERON:0010414 | 82.50 | gold quality |
| peritoneum | UBERON:0002358 | 82.45 | gold quality |
| right lung | UBERON:0002167 | 82.42 | gold quality |
| lymph node | UBERON:0000029 | 82.40 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 82.40 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 82.34 | gold quality |
| sigmoid colon | UBERON:0001159 | 82.30 | gold quality |
| right uterine tube | UBERON:0001302 | 82.29 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 82.24 | gold quality |
| mouth mucosa | UBERON:0003729 | 82.10 | gold quality |
| stromal cell of endometrium | CL:0002255 | 82.01 | gold quality |
| right atrium auricular region | UBERON:0006631 | 81.98 | gold quality |
| vagina | UBERON:0000996 | 81.91 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 81.85 | gold quality |
| liver | UBERON:0002107 | 81.85 | gold quality |
| ovary | UBERON:0000992 | 81.78 | gold quality |
| right frontal lobe | UBERON:0002810 | 81.78 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 81.78 | gold quality |
| coronary artery | UBERON:0001621 | 81.64 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 81.43 | gold quality |
| monocyte | CL:0000576 | 81.38 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 81.30 | gold quality |
| leukocyte | CL:0000738 | 81.24 | gold quality |
| tendon | UBERON:0000043 | 81.17 | gold quality |
| frontal pole | UBERON:0002795 | 81.08 | gold quality |
| mononuclear cell | CL:0000842 | 81.03 | gold quality |
| cardiac atrium | UBERON:0002081 | 80.57 | gold quality |
| tonsil | UBERON:0002372 | 80.42 | gold quality |
| muscle organ | UBERON:0001630 | 80.40 | gold quality |
| thyroid gland | UBERON:0002046 | 80.22 | gold quality |
| anatomical system | UBERON:0000467 | 80.12 | gold quality |
| prostate gland | UBERON:0002367 | 80.11 | gold quality |
| pancreas | UBERON:0001264 | 80.07 | gold quality |
| thymus | UBERON:0002370 | 80.00 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.26 |
HPA expression
RNA tissue specificity: Tissue enhanced
showing 60 of 76 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM |
|---|---|---|
| Bone marrow | tissue | 20.8 |
| Thymus | tissue | 14.1 |
| Skin 1 | tissue | 10.7 |
| Testis | tissue | 9.3 |
| Spleen | tissue | 8.4 |
| Small intestine | tissue | 6.3 |
| Tonsil | tissue | 6.3 |
| Lymph node | tissue | 6.2 |
| Duodenum | tissue | 5.9 |
| Rectum | tissue | 5.6 |
| Appendix | tissue | 5.5 |
| Stomach 1 | tissue | 4.6 |
| Liver | tissue | 4.5 |
| Salivary gland | tissue | 4.4 |
| Colon | tissue | 4.4 |
| Placenta | tissue | 4.4 |
| Skeletal muscle | tissue | 4.0 |
| Choroid plexus | tissue | 3.8 |
| Ovary | tissue | 3.7 |
| Vagina | tissue | 3.7 |
| Pancreas | tissue | 3.6 |
| Hippocampus | tissue | 3.5 |
| Esophagus | tissue | 3.4 |
| Endometrium 1 | tissue | 3.4 |
| Smooth muscle | tissue | 3.3 |
| Prostate | tissue | 3.3 |
| Breast | tissue | 3.0 |
| Seminal vesicle | tissue | 3.0 |
| Postcentral gyrus | tissue | 3.0 |
| Gallbladder | tissue | 2.9 |
| Lung | tissue | 2.8 |
| Fallopian tube | tissue | 2.8 |
| Adipose tissue | tissue | 2.6 |
| Tongue | tissue | 2.6 |
| Heart muscle | tissue | 2.5 |
| Parathyroid gland | tissue | 2.3 |
| Cervix | tissue | 2.2 |
| Nucleus accumbens | tissue | 2.2 |
| Urinary bladder | tissue | 2.1 |
| Locus coeruleus | tissue | 2.1 |
| Epididymis | tissue | 2.0 |
| Retina | tissue | 1.9 |
| Thyroid gland | tissue | 1.7 |
| Pituitary gland | tissue | 1.5 |
| Adrenal gland | tissue | 1.4 |
| Kidney | tissue | 1.3 |
| Basal ganglia | tissue | 0.8 |
| Cerebellum | tissue | 0.8 |
| Amygdala | tissue | 0.7 |
| Hippocampal formation | tissue | 0.7 |
| Olfactory bulb | tissue | 0.7 |
| Cerebral cortex | tissue | 0.6 |
| Putamen | tissue | 0.6 |
| Spinal cord | tissue | 0.6 |
| Corpus callosum | tissue | 0.6 |
| Entorhinal cortex | tissue | 0.6 |
| Ventral forebrain | tissue | 0.6 |
| Retrosplenial and cingulate cortex | tissue | 0.6 |
| Retrosplenial cortex | tissue | 0.6 |
| Temporal cortex | tissue | 0.6 |
Brain sub-regions (HPA Brain Atlas): detected in 189; highest nTPM — Vermis (9.4), Flocculonodular lobe (8.6), Cerebellar cortex (8.1), Hippocampus, CA3 (5.5), Dentate gyrus (4.8).
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
Targeting POLE by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 45 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-345-3P | 99.89 | 70.23 | 1421 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-1343-3P | 99.89 | 66.78 | 1815 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-3975 | 99.62 | 65.97 | 697 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-1324 | 99.46 | 66.57 | 1302 |
| HSA-MIR-20A-3P | 99.44 | 69.10 | 1575 |
| HSA-MIR-4762-3P | 99.43 | 69.72 | 2363 |
| HSA-MIR-4316 | 99.37 | 65.75 | 1360 |
| HSA-MIR-6828-5P | 99.31 | 69.21 | 1433 |
| HSA-MIR-4667-3P | 99.26 | 65.45 | 1608 |
| HSA-MIR-6837-5P | 99.25 | 65.47 | 1632 |
| HSA-MIR-4685-5P | 99.25 | 65.99 | 1563 |
| HSA-MIR-6878-3P | 99.24 | 64.23 | 920 |
| HSA-MIR-6852-5P | 99.17 | 66.69 | 2073 |
| HSA-MIR-485-5P | 99.10 | 64.78 | 1889 |
Functional genomics
gnomAD constraint: pLI 2.74e-38, LOEUF 0.75, missense Z 2.67 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD)
ENST00000320574 splits into 5 regions with different missense tolerance; 0 are missense-constrained. Missense variants in a constrained region (low observed/expected) are more likely to be pathogenic. gnomAD
| Region (GRCh38) | Missense obs / exp | o/e | Constrained |
|---|---|---|---|
| 12:132,624,700–132,661,015 | 1551 / 1686.1 | 0.92 | no |
| 12:132,661,016–132,661,139 | 19 / 51.5 | 0.37 | no |
| 12:132,661,140–132,664,101 | 101 / 115.4 | 0.87 | no |
| 12:132,664,102–132,664,438 | 21 / 51.9 | 0.40 | no |
| 12:132,664,439–132,687,315 | 1011 / 1111.7 | 0.91 | no |
ClinGen dosage: haploinsufficiency 1 (little evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map | |||
| DepMap (CRISPR cell-line fitness): dependent in 99.8% of screened cell lines, common-essential. |
Most-dependent cell lines (DepMap gene-effect, lower = stronger; ≤ −0.5 shown): LOU-NH91 (-2.903), KP-N-YN (-2.867), RERF-GC-1B (-2.713), EFO-21 (-2.572), DB (-2.561), BT-12 (-2.53), L-363 (-2.512), HEL (-2.479), Hs 294T (-2.397), HCC1937 (-2.396), G-292, clone A141B1 (-2.343), NCI-H747 (-2.341), CCF-STTG1 (-2.313), COV362 (-2.311), KMRC-20 (-2.298).
Literature-anchored findings (GeneRIF, showing 40)
- It is hypothesized from these observations that pol epsilon and PCNA have separate but associated functions early in S phase and that pol epsilon participates with PCNA in DNA replication late in S phase. (PMID:11741962)
- SNPs associated with prognosis of lung cancer was mapped to POLE. (PMID:17855454)
- An AATT deletion in the 55 kDa small subunit DNA sequence of DNA polymerase epsilon is associated with breast cancer (PMID:19129559)
- Statistical analysis indicated that six genes, NFATC2, SCP2, CACNA1C, TCRA, POLE, and FAM3D, were associated with narcolepsy. (PMID:20677014)
- Stable interaction between the human proliferating cell nuclear antigen loader complex Ctf18-replication factor C (RFC) and DNA polymerase {epsilon} is mediated by the cohesion-specific subunits, Ctf18, Dcc1, and Ctf8. (PMID:20826785)
- Mutation in the POLE gene that encodes p261 catalytic subunit of pol epsilon is the first found in human cells. (PMID:21157497)
- In vitro gap-directed translesion DNA synthesis of an abasic site involving human DNA polymerases epsilon, lambda, and beta. (PMID:21757740)
- Pol switches at replication-blocking lesions occur by the exchange of the Pol delta and Pol zeta catalytic subunits on a preassembled complex of accessory proteins retained on DNA during translesion DNA synthesis. (PMID:22465957)
- Data show that using a 200-nt primed circular DNA substrate, the combined action of DNA polymerase epsilon and the Cdc45/Mcm2-7/GINS (CMG complex) leads to the formation of products >10 kb in length. (PMID:22474384)
- Pol epsilon and Pol alpha/delta seem to pursue their functions at least in part independently in late S phase (PMID:22887995)
- Pol epsilon is a likely source of ribonucleotides in human genomic DNA. (PMID:23093410)
- observed impairment in proliferation and G1- to S-phase progression in patients’ T lymphocytes. Polepsilon1 depletion also impaired G1- to S-phase progression in B lymphocytes, chondrocytes, and osteoblasts. (PMID:23230001)
- Germline mutations affecting the proofreading domains of POLE and POLD1 predispose to colorectal adenomas and carcinomas. (PMID:23263490)
- Germline and somatic polymerase epsilon and delta mutations define a new class of hypermutated colorectal and endometrial cancers. (PMID:23447401)
- POLE and POLD1 mutations are associated with endometrial cancer. (PMID:23528559)
- To catalyze leading-strand synthesis in vivo, Polepsilon likely interacts with its three smaller subunits and additional replication factors in order to assemble a replication complex and significantly enhance its polymerization processivity. (PMID:24020356)
- Mutant Pol epsilon causes replication errors in vivo. In colorectal patients, the single allele mutations are microsatellite stable with a large increase in base pair substitutions, consistent with requirement of additional factors for tumor development. (PMID:24051051)
- The POLE1 p.S297F mutation was frequent in Chinese ovarian endometrioid carcinoma. (PMID:24472300)
- POLE and POLD1 mutations explain a fraction of familial CRC and polyposis. Sequencing the proofreading domains of POLE and POLD1 should be considered in routine genetic diagnostics. (PMID:24501277)
- Germline mutations in the proofreading domains of 2 DNA polymerases (POLE and POLD1) have been associated with a dominantly inherited, highly penetrant syndrome of oligo adenomatous polyposis and early-age-of-diagnosis colorectal and endometrial cancer. (PMID:24509466)
- Heterozygosity for the variant allele caused a strong mutator effect comparable with that of complete mismatch repair deficiency, providing an explanation for why loss of heterozygosity is not required for the development of Polepsilon-mutant human tumors. (PMID:24525744)
- A new amino-acid substitution in POLE was identified resulting in a predisposition to a broad spectrum of tumours in addition to colorectal cancers. (PMID:24788313)
- POLE exonuclease domain mutations occur in a subset of grade 3 endometrioid carcinomas and are associated with good clinical outcome. (PMID:24844595)
- POLE mutations have been found in other tumor types, though at lower frequency, suggesting roles in tumorigenesis more broadly in different tissue types. [Review] (PMID:24861832)
- Hearing ability was strongly associated with DNA methylation levels in the promoter regions of several genes, including TCF25, FGFR1, and POLE. (PMID:25184702)
- Somatic POLE exonuclease domain mutations are common in endometrioid endometrial cancer, are observed with equal frequency in tumors with microsatellite stability and those with microsatellite instability, and are not associated with survival. (PMID:25224212)
- Data indicate that exonuclease domain of DNA polymerase epsilon (POLE-exo*) mutants generate a unique pattern of replication errors. (PMID:25228659)
- None of the 1188 patients carried the POLD1 p.(Ser478Asn) variant. POLE germline variant carriers are also associated with a microsatellite instable colorectal cancer (PMID:25370038)
- the recognition of ultramutated endometrial carcinomas with POLE exonuclease domain mutation is important given their favorable outcome (PMID:25394778)
- The 3’–>5’ exonuclease activity of hPol further enhances polymerization fidelity by an unprecedented 3.5 x 10(2) to 1.2 x 10(4)-fold. (PMID:25414327)
- Data indicate that the polymerase (DNA directed), epsilon protein (POLE) mutation c.1270C>G;p.Leu424Val was detected in 1.5% (4/266) of all patients, 4% (3/77) of all familial cases and 7% (2/30) of familial polyposis cases. (PMID:25529843)
- The kinetic parameters of the truncated catalytic subunit and holoenzyme of human DNA polymerase varepsilon are compared. (PMID:25684708)
- Identified a genomically, histologically, and clinically distinct subgroup of high-grade gliomas that harbored somatic POLE mutations and carried an improved prognosis. (PMID:25740784)
- A novel c.1373A>T (p.Tyr458Phe)POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine. (PMID:25860647)
- POLE proofreading-mutant endometrial cancers are characterized by a robust intratumoral T-cell response, which correlates with, and may be caused by an enrichment of antigenic neopeptides (PMID:25878334)
- POLE ultra-mutated-tumors are significantly more immunogenic when compared to POLE (-) tumors, in particular to the helper arm of the immune system. (PMID:25931171)
- study of complete exonuclease domains of POLE and POLD1 in 529 families characterized by presence of familial or early-onset mismatch repair proficient colorectal cancer, and/or APC-negative and MUTYH-negative polyposis; results widen the phenotypic spectrum of the POLE/POLD1-associated syndrome and identify novel pathogenic variants (PMID:26133394)
- Missense point mutations in POLE gene is associated with Ovarian Endometrioid Carcinoma. (PMID:26166557)
- Results show that that mutated POLE 1 are associated with high neoantigen loads and may be excellent candidates for PD-1-targeted immunotherapies. (PMID:26181000)
- POLE mutations are associated with cutaneous melanoma. (PMID:26251183)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | pole | ENSDARG00000058533 |
| mus_musculus | Pole | ENSMUSG00000007080 |
| rattus_norvegicus | Pole | ENSRNOG00000037449 |
| drosophila_melanogaster | PolE1 | FBGN0264326 |
| caenorhabditis_elegans | pole-1 | WBGENE00009368 |
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:1196391) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 12 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| enlarged spleen | 1 |
| increased tumor incidence | 1 |
| premature death | 1 |
| increased intestinal adenoma incidence | 1 |
| increased intestinal adenocarcinoma incidence | 1 |
| increased lung tumor incidence | 1 |
| increased small intestine adenocarcinoma incidence | 1 |
| increased colon adenocarcinoma incidence | 1 |
| increased histiocytic sarcoma incidence | 1 |
| increased adenoma incidence | 1 |
| embryonic lethality between implantation and placentation, complete penetrance | 1 |
| increased lymphoma incidence | 1 |
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Cryptococcus deneoformans JEC21 | P0CN26 | 100.0% | Diamond |
| Cryptococcus deneoformans B-3501A | P0CN27 | 100.0% | Diamond |
| Aspergillus nidulans FGSC A4 | O93845 | 85.5% | Diamond |
| Aspergillus fumigatus Af293 | Q4WXH8 | 85.5% | Diamond |
| Arabidopsis thaliana | F4HW04 | 85.2% | Diamond |
| Saccharomyces cerevisiae S288C | P21951 | 68.5% | Diamond |
| Nakaseomyces glabratus CBS 138 | Q6FNY7 | 68.4% | Diamond |
| Kluyveromyces lactis NRRL Y-1140 | Q6CUS7 | 66.2% | Diamond |
| Eremothecium gossypii ATCC 10895 | Q752B8 | 66.0% | Diamond |
| Debaryomyces hansenii CBS767 | Q6BNG2 | 58.4% | Diamond |
| Mycosarcoma maydis | Q4PFV5 | 55.8% | Diamond |
| Schizosaccharomyces pombe 972h- | P87154 | 48.2% | Diamond |
| Yarrowia lipolytica CLIB122 | Q6C4J0 | 42.6% | Diamond |
| Dictyostelium discoideum | Q54RD4 | 42.2% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| P2RX2 | protein-coding | 22953 |
| PGAM5 | protein-coding | 192111 |
| PXMP2 | protein-coding | 5827 |
| LRCOL1 | protein-coding | 100507055 |
| ANKLE2 | protein-coding | 23141 |
Protein
Protein identifiers
DNA polymerase epsilon catalytic subunit A — Q07864 (reviewed: Q07864)
Alternative names: 3’-5’ exodeoxyribonuclease, DNA polymerase II subunit A
All UniProt accessions (9): A0A087WW42, A0A087WX51, A0A5F9ZHD6, A0A5F9ZI42, A0A8V8TQH1, A0A8V8TQW1, F5H1D6, F5H7E4, Q07864
UniProt curated annotations — full annotation on UniProt →
Function. Catalytic component of the DNA polymerase epsilon complex. Participates in chromosomal DNA replication. Required during synthesis of the leading DNA strands at the replication fork, binds at/or near replication origins and moves along DNA with the replication fork. Has 3’-5’ proofreading exonuclease activity that corrects errors arising during DNA replication. Involved in DNA synthesis during DNA repair. Along with DNA polymerase POLD1 and DNA polymerase POLK, has a role in excision repair (NER) synthesis following UV irradiation.
Subunit / interactions. Component of the DNA polymerase epsilon complex consisting of four subunits: the catalytic subunit POLE and the accessory subunits POLE2, POLE3 and POLE4. Interacts with RAD17 and TOPBP1.
Subcellular location. Nucleus.
Disease relevance. Colorectal cancer 12 (CRCS12) [MIM:615083] A complex disease characterized by malignant lesions arising from the inner wall of the large intestine (the colon) and the rectum. Genetic alterations are often associated with progression from premalignant lesion (adenoma) to invasive adenocarcinoma. Risk factors for cancer of the colon and rectum include colon polyps, long-standing ulcerative colitis, and genetic family history. CRCS12 is characterized by a high-penetrance predisposition to the development of colorectal adenomas and carcinomas, with a variable tendency to develop multiple and large tumors. Onset is usually before age 40 years. The histologic features of the tumors are unremarkable. Disease susceptibility is associated with variants affecting the gene represented in this entry. Facial dysmorphism, immunodeficiency, livedo, and short stature (FILS) [MIM:615139] A syndrome characterized by mild facial dysmorphism, mainly malar hypoplasia, livedo on the skin since birth, and immunodeficiency resulting in recurrent infections. Growth impairment is observed during early childhood and results in variable short stature in adulthood. The disease is caused by variants affecting the gene represented in this entry. Intrauterine growth retardation, metaphyseal dysplasia, adrenal hypoplasia congenita, genital anomalies, and immunodeficiency (IMAGEI) [MIM:618336] An autosomal recessive disorder characterized by intrauterine growth retardation, postnatal growth failure, metaphyseal dysplasia, adrenal hypoplasia congenita, growth hormone deficiency, genital anomalies, and immunodeficiency resulting in increased infections. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The DNA polymerase activity domain resides in the N-terminal half of the protein, while the C-terminus is necessary for maintenance of the complex. The CysA-type zinc finger is required for PCNA-binding. The CysB motif binds 1 4Fe-4S cluster and is required for the formation of polymerase complexes.
Similarity. Belongs to the DNA polymerase type-B family.
RefSeq proteins (1): NP_006222* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006133 | DNA-dir_DNA_pol_B_exonuc | Domain |
| IPR006172 | DNA-dir_DNA_pol_B | Family |
| IPR012337 | RNaseH-like_sf | Homologous_superfamily |
| IPR013697 | DNA_pol_e_suA_C | Domain |
| IPR023211 | DNA_pol_palm_dom_sf | Homologous_superfamily |
| IPR029703 | POL2 | Family |
| IPR036397 | RNaseH_sf | Homologous_superfamily |
| IPR042087 | DNA_pol_B_thumb | Homologous_superfamily |
| IPR043502 | DNA/RNA_pol_sf | Homologous_superfamily |
| IPR054475 | Znf-DPOE | Domain |
| IPR055191 | POL2_thumb | Domain |
Pfam: PF03104, PF08490, PF22634, PF22912, PF23250
Enzyme classification (BRENDA)
- EC 2.7.7.7 — DNA-directed DNA polymerase (BRENDA: 139 organisms, 372 substrates, 325 inhibitors, 281 Km, 239 kcat entries)
Substrate kinetics (BRENDA)
52 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| DATP | 0.0003–3.2 | 52 |
| DCTP | 0.0001–2.5 | 46 |
| DTTP | 0.0003–47.4 | 46 |
| DGTP | 0.0002–2.5 | 29 |
| DEOXYNUCLEOSIDE TRIPHOSPHATE | 0.0012–0.64 | 12 |
| DNAN | — | 7 |
| 7-DEAZA-2’-DEOXYADENOSINE 5’-TRIPHOSPHATE | 0.0011–0.344 | 5 |
| N1-METHYL-2’-DEOXYADENOSINE 5’-TRIPHOSPHATE | 0.223–0.403 | 5 |
| 2-AMINOPURINE-2’-DEOXY-D-RIBOSE 5’-TRIPHOSPHATE | 0.006–0.0144 | 2 |
| 2-THIO-DCTP | 0.067–0.98 | 2 |
| 5-METHYL-DCTP | 0.013–1.22 | 2 |
| DAMP:DG | 1.153–1.42 | 2 |
| DCMP:DG | — | 2 |
| DGMP:DG | 0.263–0.3511 | 2 |
| DTMP:DG | 1.26–1.43 | 2 |
Catalyzed reactions (Rhea)
- DNA(n) + a 2’-deoxyribonucleoside 5’-triphosphate = DNA(n+1) + diphosphate (RHEA:22508)
UniProt features (249 total): strand 86, helix 81, sequence variant 42, turn 20, binding site 8, modified residue 4, region of interest 2, compositionally biased region 2, chain 1, zinc finger region 1, short sequence motif 1, sequence conflict 1
Structure
Experimental structures (PDB)
18 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 5VBN | Crystal Structure of human DNA polymerase epsilon B-subunit in complex with C-terminal … | X-RAY DIFFRACTION | 2.35 |
| 7PLO | H. sapiens replisome-CUL2/LRR1 complex | ELECTRON MICROSCOPY | 2.8 |
| 9B8T | Human polymerase epsilon bound to PCNA and DNA in the nucleotide bound state | ELECTRON MICROSCOPY | 2.95 |
| 9NE6 | Human polymerase epsilon bound to PCNA and DNA with an in-situ-generated mismatch in the … | ELECTRON MICROSCOPY | 3.11 |
| 7PFO | Core human replisome | ELECTRON MICROSCOPY | 3.2 |
| 9F6I | Human DNA Polymerase epsilon bound to T-C mismatched DNA (Post-Insertion state) | ELECTRON MICROSCOPY | 3.3 |
| 9SRI | Human DNA polymerase epsilon bound to DNA blunt end | ELECTRON MICROSCOPY | 3.3 |
| 9NE7 | Human polymerase epsilon bound to PCNA and DNA with an in-situ-generated mismatch in the … | ELECTRON MICROSCOPY | 3.53 |
| 9F6D | Human DNA polymerase epsilon bound to DNA and PCNA (open conformation) | ELECTRON MICROSCOPY | 3.6 |
| 9NE8 | Human polymerase epsilon bound to PCNA and DNA with an in-situ-generated mismatch in the … | ELECTRON MICROSCOPY | 3.6 |
| 9F6E | Human DNA polymerase epsilon bound to DNA and PCNA (ajar conformation) | ELECTRON MICROSCOPY | 3.74 |
| 9F6F | Human DNA polymerase epsilon bound to DNA and PCNA (closed conformation) | ELECTRON MICROSCOPY | 3.75 |
| 9NEA | Human polymerase epsilon bound to PCNA and DNA with a pre-existing mismatch in the … | ELECTRON MICROSCOPY | 3.81 |
| 9NE9 | Human polymerase epsilon bound to PCNA and DNA with a pre-existing mismatch in the … | ELECTRON MICROSCOPY | 3.88 |
| 9F6J | Human DNA Polymerase epsilon bound to T-C mismatched DNA (Polymerase Arrest state) | ELECTRON MICROSCOPY | 3.9 |
| 9F6L | Human DNA Polymerase epsilon bound to T-C mismatched DNA (Mismatch Excision state) | ELECTRON MICROSCOPY | 3.9 |
| 9F6K | Human DNA Polymerase epsilon bound to T-C mismatched DNA (Frayed Substrate state) | ELECTRON MICROSCOPY | 4.2 |
| 9B8S | Human polymerase epsilon bound to PCNA and DNA in the nucleotide exchange state | ELECTRON MICROSCOPY | 5.01 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q07864-F1 | 80.32 | 0.31 |
Human Protein Atlas
Protein class: Enzymes, ENZYME proteins, Transferases, Metabolic proteins, Predicted intracellular proteins, Plasma proteins, Cancer-related genes, Mutated cancer genes, Disease related genes, FDA approved drug targets, Small molecule drugs, Human disease related genes, Congenital malformations, Other congenital malformations, Essential proteins
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): nucleoplasm; plasma membrane
Antibody reliability (HPA): IF enhanced
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8)
| Position | Role |
|---|---|
| 2190 | Zn(2+) |
| 2221 | [4Fe-4S] cluster |
| 2224 | [4Fe-4S] cluster |
| 2236 | [4Fe-4S] cluster |
| 2238 | [4Fe-4S] cluster |
| 2158 | Zn(2+) |
| 2161 | Zn(2+) |
| 2187 | Zn(2+) |
Post-translational modifications (4)
| Type | Positions |
|---|---|
| Phosphoserine | 1184, 1297, 1317, 1940 |
Function
Pathways and Gene Ontology
Reactome pathways
10 curated (TAS) of 30; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
30 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-68962 | Activation of the pre-replicative complex | curated |
| R-HSA-68952 | DNA replication initiation | curated |
| R-HSA-5696400 | Dual Incision in GG-NER | curated |
| R-HSA-6782135 | Dual incision in TC-NER | curated |
| R-HSA-5696397 | Gap-filling DNA repair synthesis and ligation in GG-NER | curated |
| R-HSA-6782210 | Gap-filling DNA repair synthesis and ligation in TC-NER | curated |
| R-HSA-5685942 | HDR through Homologous Recombination (HRR) | curated |
| R-HSA-5651801 | PCNA-Dependent Long Patch Base Excision Repair | curated |
| R-HSA-110314 | Recognition of DNA damage by PCNA-containing replication complex | curated |
| R-HSA-5656169 | Termination of translesion DNA synthesis | curated |
| R-HSA-73884 | Base Excision Repair | — |
| R-HSA-1640170 | Cell Cycle | — |
| R-HSA-69278 | Cell Cycle, Mitotic | — |
| R-HSA-73893 | DNA Damage Bypass | — |
| R-HSA-5693532 | DNA Double-Strand Break Repair | — |
| R-HSA-73894 | DNA Repair | — |
| R-HSA-69306 | DNA Replication | — |
| R-HSA-69002 | DNA Replication Pre-Initiation | — |
| R-HSA-69206 | G1/S Transition | — |
| R-HSA-5696399 | Global Genome Nucleotide Excision Repair (GG-NER) | — |
| R-HSA-5693567 | HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA) | — |
| R-HSA-5693538 | Homology Directed Repair | — |
| R-HSA-453279 | Mitotic G1 phase and G1/S transition | — |
| R-HSA-5696398 | Nucleotide Excision Repair | — |
| R-HSA-110373 | Resolution of AP sites via the multiple-nucleotide patch replacement pathway | — |
| R-HSA-73933 | Resolution of Abasic Sites (AP sites) | — |
| R-HSA-69242 | S Phase | — |
| R-HSA-69239 | Synthesis of DNA | — |
| R-HSA-6781827 | Transcription-Coupled Nucleotide Excision Repair (TC-NER) | — |
| R-HSA-110313 | Translesion synthesis by Y family DNA polymerases bypasses lesions on DNA template | — |
MSigDB gene sets: 511 (showing top):
GOBP_DNA_TEMPLATED_DNA_REPLICATION_MAINTENANCE_OF_FIDELITY, VERHAAK_AML_WITH_NPM1_MUTATED_DN, REACTOME_DNA_REPLICATION, BENPORATH_ES_WITH_H3K27ME3, FISCHER_G1_S_CELL_CYCLE, GOMF_NUCLEASE_ACTIVITY, GOBP_DNA_STRAND_ELONGATION_INVOLVED_IN_DNA_REPLICATION, GOBP_CELL_CYCLE_PHASE_TRANSITION, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN, KAUFFMANN_DNA_REPAIR_GENES, PUJANA_CHEK2_PCC_NETWORK, GOBP_NUCLEOTIDE_EXCISION_REPAIR, GOMF_DNA_POLYMERASE_ACTIVITY
GO Biological Process (13): G1/S transition of mitotic cell cycle (GO:0000082), mitotic cell cycle (GO:0000278), DNA synthesis involved in DNA repair (GO:0000731), DNA replication (GO:0006260), DNA-templated DNA replication (GO:0006261), leading strand elongation (GO:0006272), base-excision repair, gap-filling (GO:0006287), nucleotide-excision repair, DNA gap filling (GO:0006297), DNA replication proofreading (GO:0045004), embryonic organ development (GO:0048568), DNA repair (GO:0006281), DNA damage response (GO:0006974), DNA biosynthetic process (GO:0071897)
GO Molecular Function (15): nucleotide binding (GO:0000166), DNA binding (GO:0003677), chromatin binding (GO:0003682), DNA-directed DNA polymerase activity (GO:0003887), zinc ion binding (GO:0008270), single-stranded DNA 3’-5’ DNA exonuclease activity (GO:0008310), 4 iron, 4 sulfur cluster binding (GO:0051539), nucleic acid binding (GO:0003676), protein binding (GO:0005515), transferase activity (GO:0016740), nucleotidyltransferase activity (GO:0016779), hydrolase activity (GO:0016787), DNA polymerase activity (GO:0034061), metal ion binding (GO:0046872), iron-sulfur cluster binding (GO:0051536)
GO Cellular Component (4): nucleus (GO:0005634), nucleoplasm (GO:0005654), plasma membrane (GO:0005886), epsilon DNA polymerase complex (GO:0008622)
Reactome top-level categories
15 top-level categories:
| Category | Pathways |
|---|---|
| DNA Damage Bypass | 2 |
| Global Genome Nucleotide Excision Repair (GG-NER) | 2 |
| Transcription-Coupled Nucleotide Excision Repair (TC-NER) | 2 |
| DNA Repair | 2 |
| Nucleotide Excision Repair | 2 |
| Resolution of AP sites via the multiple-nucleotide patch replacement pathway | 1 |
| Translesion synthesis by Y family DNA polymerases bypasses lesions on DNA template | 1 |
| HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA) | 1 |
| Synthesis of DNA | 1 |
| DNA Replication Pre-Initiation | 1 |
| G1/S Transition | 1 |
| Resolution of Abasic Sites (AP sites) | 1 |
| Cell Cycle, Mitotic | 1 |
| DNA Double-Strand Break Repair | 1 |
| Homology Directed Repair | 1 |
GO top-level categories
43 GO namespaces:
| Category | Terms |
|---|---|
| DNA metabolic process | 5 |
| DNA biosynthetic process | 3 |
| binding | 3 |
| DNA repair | 2 |
| catalytic activity | 2 |
| mitotic cell cycle | 1 |
| mitotic cell cycle phase transition | 1 |
| cell cycle G1/S phase transition | 1 |
| cell cycle | 1 |
| mitotic nuclear division | 1 |
| DNA replication | 1 |
| DNA replication, synthesis of primer | 1 |
| DNA strand elongation involved in DNA replication | 1 |
| DNA replication, removal of RNA primer | 1 |
| base-excision repair | 1 |
| nucleotide-excision repair | 1 |
| DNA-templated DNA replication maintenance of fidelity | 1 |
| embryo development | 1 |
| animal organ development | 1 |
| DNA damage response | 1 |
| cellular response to stress | 1 |
| nucleic acid biosynthetic process | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| nucleic acid binding | 1 |
| DNA polymerase activity | 1 |
| transition metal ion binding | 1 |
| 3’-5’-DNA exonuclease activity | 1 |
| single-stranded DNA exodeoxyribonuclease activity | 1 |
| iron-sulfur cluster binding | 1 |
| transferase activity, transferring phosphorus-containing groups | 1 |
| nucleotidyltransferase activity | 1 |
| catalytic activity, acting on DNA | 1 |
| cation binding | 1 |
| metal cluster binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| cellular anatomical structure | 1 |
| membrane | 1 |
| cell periphery | 1 |
| nuclear chromosome | 1 |
| DNA polymerase complex | 1 |
| nuclear protein-containing complex | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 13 of 32 annotations. The rest are phylogenetic / computational / electronic (IEA).
13 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| DNA replication | BP | mutant phenotype |
| DNA synthesis involved in DNA repair | BP | mutant phenotype |
| DNA-templated DNA replication | BP | direct assay |
| G1/S transition of mitotic cell cycle | BP | mutant phenotype |
| base-excision repair, gap-filling | BP | direct assay |
| nucleotide-excision repair, DNA gap filling | BP | mutant phenotype |
| epsilon DNA polymerase complex | CC | direct assay |
| nucleoplasm | CC | direct assay |
| nucleus | CC | direct assay |
| plasma membrane | CC | direct assay |
| DNA binding | MF | direct assay |
| DNA-directed DNA polymerase activity | MF | mutant phenotype |
| chromatin binding | MF | direct assay |
Protein interactions and networks
STRING
showing 15 of 2,173 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| POLE | POLD1 | P28340 | 979 |
| POLE | POLE2 | P56282 | 960 |
| POLE | POLE4 | Q9NR33 | 930 |
| POLE | POLE3 | Q9NRF9 | 913 |
| POLE | MSH6 | P52701 | 866 |
| POLE | REV3L | O60673 | 852 |
| POLE | MSH2 | P43246 | 842 |
| POLE | MLH1 | P40692 | 834 |
| POLE | PMS2 | P54278 | 828 |
| POLE | MSH3 | P20585 | 801 |
| POLE | MUTYH | Q9UIF7 | 784 |
| POLE | LIG3 | P49916 | 772 |
| POLE | XRCC1 | P18887 | 748 |
| POLE | NTHL1 | P78549 | 730 |
| POLE | LIG1 | P18858 | 730 |
IntAct
Human interaction partners of POLE in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
21 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| POLE2 | physical association | 0.860 | 10 |
| BRAF | physical association | 0.600 | 4 |
| ABHD16A | physical association | 0.560 | 3 |
| POLE4 | association | 0.530 | 2 |
| LRRK2 | direct interaction | 0.440 | 1 |
| BLTP3A | physical association | 0.400 | 1 |
| CFTR | physical association | 0.370 | 1 |
| HSPA8 | association | 0.350 | 1 |
| LIAS | association | 0.350 | 1 |
| FBXW7 | proximity | 0.270 | 4 |
| SMAD4 | proximity | 0.270 | 4 |
| SMARCA4 | proximity | 0.270 | 4 |
| SPOP | proximity | 0.270 | 4 |
| AKT1 | proximity | 0.270 | 1 |
| EGFR | proximity | 0.270 | 1 |
| PTEN | proximity | 0.270 | 1 |
| PTPN11 | proximity | 0.270 | 1 |
| TP53 | proximity | 0.270 | 1 |
| DISC1 | physical association | 0.000 | 1 |
| MYC | physical association | 0.000 | 1 |
| WHR1 | physical association | 0.000 | 1 |
BioGRID (207 interactions; top human partners by supporting records): POLE2 (Affinity Capture-MS; 11 records), PCNA (Co-fractionation; 6 records), POLE3 (Co-fractionation; 6 records), CIAO1 (Affinity Capture-Western; 4 records), MMS19 (Affinity Capture-Western; 4 records), CLSPN (Affinity Capture-Western; 3 records), DNAJC7 (Affinity Capture-MS; 3 records), LRRC46 (Affinity Capture-MS; 3 records), MYC (Affinity Capture-MS; 3 records), POLE4 (Co-fractionation; 3 records), BAG2 (Affinity Capture-MS; 2 records), C16orf45 (Affinity Capture-MS; 2 records), DKKL1 (Affinity Capture-MS; 2 records), FAM96A (Affinity Capture-MS; 2 records), KRAS (Synthetic Lethality; 2 records)
SIGNOR signaling
1 signaling interactions:
| A | Effect | B | Mechanism |
|---|---|---|---|
| POLE | “form complex” | “DNA polymerase epsilon” | binding |
Protein complexes (CORUM) (5)
Experimentally-characterized complexes this protein is a subunit of (★ = the complex contains a known drug target).
5 complexes by size:
| Complex | Subunits | Members |
|---|---|---|
| ★ RC complex, S-phase-specific | 23 | POLD4, POLE2, POLE4, CCNA2, CDK2, POLD2, POLD3, RFC2, POLE, RFC1, RFC5, RPA3, LIG1, PARP1, POLA1, POLD1, RFC3, RPA2, POLA2, POLE3, RFC4, RPA1, TOP1 |
| ★ DNA synthesome complex, breast cancer MCF7 cells | 23 | POLA2, POLD3, POLE4, PRIM1, RFC1, RPA1, PCNA, POLD4, POLE2, POLE3, RFC4, TOP1, POLA1, RFC2, RFC3, RFC5, RPA2, RPA3, TOP2A, POLD1, POLD2, POLE, PRIM2 |
| ★ DNA synthesome complex, breast cancer cells | 20 | POLD3, POLE4, RFC2, RFC3, POLA2, POLE3, LIG1, PARP1, PCNA, POLD2, PRIM1, PRIM2, RFC1, RFC4, POLD4, POLE, POLE2, RFC5, POLA1, POLD1 |
| ★ RC complex, G2/M-phase-specific | 19 | CCNB1, POLA1, POLA2, POLD2, RPA1, RPA2, CDK1, POLD3, RFC1, RFC2, RPA3, POLD1, POLD4, POLE, POLE3, PARP1, POLE2, POLE4, TOP1 |
| ★ DNA polymerase epsilon | 4 | POLE, POLE2, POLE3, POLE4 |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 21 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Ub-specific processing proteases | 5 | 15.6× | 4e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| positive regulation of miRNA transcription | 5 | 72.6× | 4e-06 |
| positive regulation of gene expression | 5 | 9.7× | 5e-03 |
| negative regulation of apoptotic process | 5 | 8.7× | 7e-03 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: activating (oncogene-like) across 2 cancer types — ACC, BLCA.
intOGen’s role is a computational inference from cohort mutation patterns and may diverge from the gene’s curated/literature role; read it alongside the evidence above.
Genetic variants
Variant evidence for POLE: 11,128 ClinVar records (482 pathogenic / likely pathogenic); 4 CIViC cancer variants; 3 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
11,128 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 354 |
| Likely pathogenic | 128 |
| Uncertain significance | 5512 |
| Likely benign | 3744 |
| Benign | 131 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 482 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 40046 | NM_006231.4(POLE):c.1270C>G (p.Leu424Val) | Pathogenic | criteria provided, multiple submitters, no conflicts | 11 |
| 2717088 | NM_006231.4(POLE):c.5678+1G>T | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 4772281 | NM_006231.4(POLE):c.507_508dup (p.Ile170fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 806968 | NM_006231.4(POLE):c.5379-5_5384del | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 928703 | NM_006231.4(POLE):c.1306C>T (p.Pro436Ser) | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 2636782 | NM_006231.4(POLE):c.3276-1G>C | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 2582706 | NM_006231.4(POLE):c.2154del (p.Lys717_Tyr718insTer) | Pathogenic | criteria provided, single submitter | 2 |
| 405692 | NM_006231.4(POLE):c.3501_3502insGGTCAAA (p.His1168fs) | Pathogenic | criteria provided, single submitter | 1 |
| 405812 | NM_006231.4(POLE):c.3510dup (p.Leu1171fs) | Pathogenic | criteria provided, single submitter | 1 |
| 405813 | NM_006231.4(POLE):c.1673del (p.Cys558fs) | Pathogenic | criteria provided, single submitter | 1 |
| 473697 | NM_006231.4(POLE):c.4900del (p.Arg1634fs) | Pathogenic | criteria provided, single submitter | 1 |
| 540728 | NM_006231.4(POLE):c.340C>T (p.Arg114Ter) | Pathogenic | criteria provided, single submitter | 1 |
| 540730 | NM_006231.4(POLE):c.4420del (p.Ala1474fs) | Pathogenic | criteria provided, single submitter | 1 |
| 540766 | NM_006231.4(POLE):c.3534C>A (p.Tyr1178Ter) | Pathogenic | criteria provided, single submitter | 1 |
| 540827 | NM_006231.4(POLE):c.6434_6438del (p.Arg2145fs) | Pathogenic | criteria provided, single submitter | 1 |
Per-variant reference — Sugi Variant
Explore POLE’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 23 predictions of 4,615):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 12:132624811 | acceptor_loss | 1.0000 | |
| 12:132624815 | acceptor_gain | 1.0000 | |
| 12:132624903–132624904 | donor_loss | 1.0000 | 5 |
| 12:132625643–132625644 | donor_loss | 1.0000 | 3 |
| 12:132634184–132634185 | donor_loss | 1.0000 | 4 |
| 12:132635971–132635972 | acceptor_gain | 1.0000 | 2 |
| 12:132638012–132638013 | donor_loss | 1.0000 | 4 |
| 12:132641630 | donor_gain | 1.0000 | |
| 12:132641677 | donor_gain | 1.0000 | |
| 12:132641682 | donor_gain | 1.0000 |
AlphaMissense
5,865 missense substitutions predicted likely pathogenic (of 15,124 scored), across 1,433 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| M630 | 9 | 0.979 | 0.999 |
| M820 | 9 | 0.969 | 0.998 |
| M940 | 9 | 0.969 | 1.000 |
| M831 | 9 | 0.961 | 0.998 |
| M295 | 9 | 0.959 | 0.998 |
| M1039 | 9 | 0.952 | 0.999 |
| M299 | 9 | 0.938 | 0.993 |
| M444 | 9 | 0.891 | 0.991 |
| M506 | 9 | 0.891 | 0.988 |
| H624 | 8 | 1.000 | 1.000 |
| D626 | 8 | 1.000 | 1.000 |
| D862 | 8 | 1.000 | 1.000 |
| D860 | 8 | 0.999 | 1.000 |
| D414 | 8 | 0.998 | 1.000 |
| D462 | 8 | 0.998 | 1.000 |
| D934 | 8 | 0.998 | 0.999 |
| D275 | 8 | 0.997 | 0.999 |
| D406 | 8 | 0.997 | 0.999 |
| F971 | 8 | 0.997 | 1.000 |
| N813 | 8 | 0.996 | 1.000 |
HPA cancer prognostics
RNA cancer specificity: Low cancer specificity
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
1 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Skin Cutaneous Melanoma (TCGA) | unfavorable | 0.000682 |
Disease associations
OMIM: gene MIM:174762 | disease phenotypes: MIM:615083, MIM:618336, MIM:615139, MIM:219721, MIM:114500
GenCC curated gene-disease
6 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| POLE-related polyposis and colorectal cancer syndrome | Definitive | Autosomal dominant | 2 |
| colorectal cancer, susceptibility to, 12 | Strong | Autosomal dominant | 3 |
| facial dysmorphism-immunodeficiency-livedo-short stature syndrome | Strong | Autosomal recessive | 4 |
| intrauterine growth retardation, metaphyseal dysplasia, adrenal hypoplasia congenita, genital anomalies, and immunodeficiency | Strong | Autosomal dominant | 2 |
| Polymerase proofreading-related adenomatous polyposis | Supportive | Autosomal dominant | |
| IMAGe syndrome | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
1 validity classifications:
| Disease | Classification | Inheritance |
|---|---|---|
| POLE-related polyposis and colorectal cancer syndrome | Definitive | AD |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (11 panels, 11 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
11 panels:
| Panel | Rating |
|---|---|
| Adult solid tumours cancer susceptibility | green |
| Adult solid tumours for rare disease | green |
| COVID-19 research | green |
| Colorectal cancer pertinent cancer susceptibility | green |
| Congenital adrenal hypoplasia | green |
| DDG2P | green |
| Fetal anomalies | green |
| GI tract tumours | green |
| Inherited polyposis and early onset colorectal cancer - germline testing | green |
| Paediatric disorders | green |
| Primary immunodeficiency or monogenic inflammatory bowel disease | green |
Mondo (14): colorectal cancer, susceptibility to, 12 (MONDO:0014038), intrauterine growth retardation, metaphyseal dysplasia, adrenal hypoplasia congenita, genital anomalies, and immunodeficiency (MONDO:0032684), facial dysmorphism-immunodeficiency-livedo-short stature syndrome (MONDO:0014058), hereditary neoplastic syndrome (MONDO:0015356), myoepithelial tumor (MONDO:0002380), cystic fibrosis-gastritis-megaloblastic anemia syndrome (MONDO:0009062), familial colorectal cancer type X (MONDO:0018604), Polymerase proofreading-related adenomatous polyposis (MONDO:0018653), familial colorectal cancer (MONDO:0023113), POLE-related polyposis and colorectal cancer syndrome (MONDO:0100287), colorectal carcinoma (MONDO:0024331), colon carcinoma (MONDO:0002032), colorectal cancer (MONDO:0005575), IMAGe syndrome (MONDO:0013873)
Orphanet (7): Attenuated familial adenomatous polyposis (Orphanet:220460), Facial dysmorphism-immunodeficiency-livedo-short stature syndrome (Orphanet:352712), Inherited cancer-predisposing syndrome (Orphanet:140162), Cystic fibrosis-gastritis-megaloblastic anemia syndrome (Orphanet:2575), Familial colorectal cancer Type X (Orphanet:440437), Polymerase proofreading-related polyposis (Orphanet:447877), NON RARE IN EUROPE: Colorectal cancer (Orphanet:466667)
HPO phenotypes
showing 60 of 116 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000047 | Hypospadias |
| HP:0000054 | Micropenis |
| HP:0000078 | Abnormality of the genital system |
| HP:0000126 | Hydronephrosis |
| HP:0000135 | Hypogonadism |
| HP:0000252 | Microcephaly |
| HP:0000272 | Malar flattening |
| HP:0000337 | Broad forehead |
| HP:0000347 | Micrognathia |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000369 | Low-set ears |
| HP:0000460 | Narrow nose |
| HP:0000470 | Short neck |
| HP:0000475 | Broad neck |
| HP:0000505 | Visual impairment |
| HP:0000708 | Atypical behavior |
| HP:0000716 | Depression |
| HP:0000737 | Irritability |
| HP:0000738 | Hallucinations |
| HP:0000739 | Anxiety |
| HP:0000824 | Decreased response to growth hormone stimulation test |
| HP:0000835 | Adrenal hypoplasia |
| HP:0000938 | Osteopenia |
| HP:0000957 | Cafe-au-lait spot |
| HP:0000964 | Eczematoid dermatitis |
| HP:0001123 | Visual field defect |
| HP:0001250 | Seizure |
| HP:0001252 | Hypotonia |
| HP:0001260 | Dysarthria |
| HP:0001276 | Hypertonia |
| HP:0001288 | Gait disturbance |
| HP:0001371 | Flexion contracture |
| HP:0001402 | Hepatocellular carcinoma |
| HP:0001511 | Intrauterine growth retardation |
| HP:0001824 | Weight loss |
| HP:0002007 | Frontal bossing |
| HP:0002017 | Nausea and vomiting |
| HP:0002019 | Constipation |
| HP:0002024 | Malabsorption |
| HP:0002027 | Abdominal pain |
| HP:0002076 | Migraine |
| HP:0002110 | Bronchiectasis |
| HP:0002167 | Abnormal speech pattern |
| HP:0002239 | Gastrointestinal hemorrhage |
| HP:0002354 | Memory impairment |
| HP:0002376 | Developmental regression |
| HP:0002516 | Increased intracranial pressure |
| HP:0002650 | Scoliosis |
| HP:0002653 | Bone pain |
| HP:0002671 | Basal cell carcinoma |
| HP:0002719 | Recurrent infections |
| HP:0002721 | Immunodeficiency |
| HP:0002783 | Recurrent lower respiratory tract infections |
| HP:0002788 | Recurrent upper respiratory tract infections |
| HP:0002850 | Decreased circulating IgM concentration |
| HP:0002893 | Pituitary adenoma |
| HP:0002894 | Neoplasm of the pancreas |
GWAS associations
3 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST005951_13 | Body mass index | 6e-9 |
| GCST002829_6 | Urate levels in overweight individuals | 4e-6 |
| GCST009391_58 | Metabolite levels | 5e-6 |
EFO canonical traits (from GWAS)
2 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0004531 | urate measurement |
| EFO:0004340 | body mass index |
MeSH disease descriptors
3 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009208 | Myoepithelioma | C04.557.435.585 |
| D009386 | Neoplastic Syndromes, Hereditary | C04.700; C16.320.700 |
| C537039 | Lubani Al Saleh Teebi syndrome *(supp.)* |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2363042 (PROTEIN FAMILY)
Clinical evidence (CIViC)
Drug × variant × indication, from 4 curated evidence items; also 4 prognostic, 1 functional. CIViC evidence level: A (validated) → B (clinical) → C (case study) → D (preclinical) → E (inferential).
4 predictive associations by evidence level:
| Variant | Therapy | Indication | Effect | Level | CIViC |
|---|---|---|---|---|---|
| POLE Mutation | Pembrolizumab | Glioblastoma | Sensitivity/Response | CIViC C | EID1861 |
| POLE Mutation | Pembrolizumab | Endometrial Cancer | Sensitivity/Response | CIViC C | EID1862 |
| POLE Mutation | Pembrolizumab | Colorectal Cancer | Sensitivity/Response | CIViC C | EID7469 |
| POLE V411L | Colorectal Cancer | Sensitivity/Response | CIViC C | EID8631 |
CIViC curated variants (4)
Named clinical variants curated in CIViC for this gene (the catalogue beneath the predictive evidence above):
P286R (missense variant), V411L (missense variant), S459F (missense variant), Mutation (gene variant).
PharmGKB: 1 entry (CPIC guideline: no)
CTD chemical–gene interactions
49 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases expression, decreases expression, increases abundance | 4 |
| methacrylaldehyde | affects cotreatment, increases expression, increases oxidation, increases abundance | 2 |
| Acrolein | affects cotreatment, increases expression, increases oxidation, increases abundance | 2 |
| Ozone | affects cotreatment, increases expression, increases oxidation, increases abundance | 2 |
| FR900359 | decreases phosphorylation | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | increases expression, increases oxidation, increases abundance, affects cotreatment | 1 |
| geraniol | decreases expression | 1 |
| 2,2’-methylenebis(4-methyl-6-tert-butylphenol) | affects expression, affects response to substance | 1 |
| beta-lapachone | decreases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| manganese chloride | decreases expression, increases abundance | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | increases expression, affects cotreatment | 1 |
| aflatoxin B2 | increases methylation | 1 |
| phenethyl isothiocyanate | decreases expression | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| jinfukang | increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Troglitazone | decreases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Glyphosate | decreases expression | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases expression, increases oxidation | 1 |
| Ethanol | decreases expression | 1 |
| Arsenic | increases abundance, decreases expression | 1 |
| Atrazine | decreases expression | 1 |
Cellosaurus cell lines
40 cell lines: 39 cancer cell line, 1 hybrid cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_2529 | Ishikawa | Cancer cell line | Female |
| CVCL_7260 | ECC-1 | Cancer cell line | Female |
| CVCL_8783 | Ishikawa (London) 02 ER+ | Cancer cell line | Female |
| CVCL_9996 | IK-90 | Cancer cell line | Female |
| CVCL_C3G7 | Ishikawa 3-H-12 PRA-14 | Cancer cell line | Female |
| CVCL_C3G8 | Ishikawa 3-H-12 PRB-59 | Cancer cell line | Female |
| CVCL_C9CC | ISHIKAWA-Luc | Cancer cell line | Female |
| CVCL_D199 | Ishikawa 3-H-12 | Cancer cell line | Female |
| CVCL_F1R3 | HyCyte Ishikawa KO-hCTNNBIP1 | Cancer cell line | Female |
| CVCL_F5PN | EDITGENE Ishikawa-Cas9 | Cancer cell line | Female |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 301 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT01169220 | Phase 4 | COMPLETED | Bowel Preparation for Inpatient Colonoscopy |
| NCT01170754 | Phase 4 | COMPLETED | Miralax (PEG 3350) vs. Golytely as Bowel Preparation for Screening Colonoscopy |
| NCT02052557 | Phase 4 | COMPLETED | The Effect of Exparel on Post Operative Pain and Narcotic Use After Colon Surgery |
| NCT02078726 | Phase 4 | COMPLETED | Glucagon Use in Colonoscopies |
| NCT02231203 | Phase 4 | COMPLETED | Effect of Omega-3 Fatty Acids on the Perioperative Immune Response and Erythrocyte Function |
| NCT02314871 | Phase 4 | COMPLETED | Effects of Different Types of Perioperative Analgesia on Minimal Residual Disease Development After Colon Cancer Surgery |
| NCT02746432 | Phase 4 | UNKNOWN | Insulin Therapy Reduce Post-Operative Inflammatory Response After Curative Colorectal Cancer Resection: Randomization Controlled Trial |
| NCT02887365 | Phase 4 | UNKNOWN | A Phase II Study of Tegafur-Uracil as Maintenance Chemotherapy in Patients With Stage II of Colon Cancer |
| NCT02937506 | Phase 4 | COMPLETED | Patient Satisfaction With Propofol for Out Patient Colonoscopy |
| NCT02958566 | Phase 4 | UNKNOWN | Multimodal Narcotic Limited Perioperative Pain Control With Colorectal Surgery |
| NCT04269369 | Phase 4 | UNKNOWN | Implementation of Pre-emptive Geno- and Phenotyping in 5-Fluorouracil- or Capecitabine-treated Patients |
| NCT04311099 | Phase 4 | COMPLETED | Optimal Peripheral Nerve Block After Minimally Invasive Colon Surgery |
| NCT04709770 | Phase 4 | UNKNOWN | Low-volume vs High-volume Polyethylene Glycol Based Bowel Preparation for Colonoscopy in People Receiving Hemodialysis |
| NCT05250648 | Phase 4 | RECRUITING | Clinical Trial on HIPEC With Mitomycin C in Colon Cancer Peritoneal Metastases (GECOP-MMC) |
| NCT07802847 | Phase 4 | NOT_YET_RECRUITING | Innovative and Cooperative Pathway Integrating Oncogeriatric, Pharmaceutical and Pharmacological Follow-up in Elderly Patients. |
| NCT00002968 | Phase 3 | COMPLETED | Edrecolomab in Treating Patients With Stage II Colon Cancer |
| NCT00003835 | Phase 3 | COMPLETED | Combination Chemotherapy in Treating Patients With Stage III Colon Cancer |
| NCT00003873 | Phase 3 | COMPLETED | Fluorouracil With or Without Eniluracil in Treating Patients With Advanced Colorectal Cancer |
| NCT00004931 | Phase 3 | COMPLETED | Fluorouracil Plus Leucovorin With or Without Oxaliplatin in Treating Patients With Stage II or Stage III Colon Cancer |
| NCT00005036 | Phase 3 | COMPLETED | Irinotecan Compared With Combination Chemotherapy in Treating Patients With Advanced Colorectal Cancer |
| NCT00005094 | Phase 3 | COMPLETED | Celecoxib to Prevent Colorectal Cancer in Patients Who Have Undergone Surgery to Remove Polyps |
| NCT00025337 | Phase 3 | COMPLETED | Combination Chemotherapy With or Without Bevacizumab Compared With Bevacizumab Alone in Treating Patients With Advanced or Metastatic Colorectal Cancer That Has Been Previously Treated |
| NCT00070122 | Phase 3 | TERMINATED | Combination Chemotherapy and Bevacizumab in Treating Patients With Locally Advanced, Metastatic, or Recurrent Colorectal Cancer |
| NCT00079274 | Phase 3 | COMPLETED | Comparison of Combination Chemotherapy Regimens With or Without Cetuximab in Treating Patients Who Have Undergone Surgery For Stage III Colon Cancer |
| NCT00096278 | Phase 3 | COMPLETED | Fluorouracil, Leucovorin, and Oxaliplatin With or Without Bevacizumab in Treating Patients Who Have Undergone Surgery for Stage II or Stage III Colon Cancer |
| NCT00188305 | Phase 3 | COMPLETED | A Randomized Trial of Cancer Risk and Health Education in Relatives of Colorectal Cancer Patients |
| NCT00195585 | Phase 3 | COMPLETED | Study Evaluating Isovorin in Colon Cancer |
| NCT00217737 | Phase 3 | COMPLETED | Oxaliplatin, Leucovorin, and Fluorouracil With or Without Bevacizumab in Treating Patients Who Have Undergone Surgery for Stage II Colon Cancer |
| NCT00230646 | Phase 3 | COMPLETED | Promoting Physical Activity After Colorectal Cancer |
| NCT00309530 | Phase 3 | COMPLETED | Randomized Study on Adjuvant Chemotherapy and Adjuvant Chemo-Immunotherapy in Colon Carcinoma Dukes C |
| NCT00309543 | Phase 3 | COMPLETED | Randomized Trial on Adjuvant Chemotherapy in Colon Carcinoma Dukes B |
| NCT00337389 | Phase 3 | UNKNOWN | Phase III Randomized Study of 5-FU, CoFactor, and Avastin vs. 5-FU, LV and Avastin for First-Line Colorectal Cancer. |
| NCT00467922 | Phase 3 | COMPLETED | An Assessment of Goal-Directed Intraoperative Fluid Management in Hand Assisted Laparoscopic Colectomy |
| NCT00499369 | Phase 3 | TERMINATED | Irinotecan and Cetuximab With or Without Bevacizumab in Treating Patients With Metastatic Colorectal Cancer That Progressed During First-Line Therapy |
| NCT00509444 | Phase 3 | COMPLETED | Cancer Prevention and Treatment Among African American Older Adults: Treatment Trial |
| NCT00646607 | Phase 3 | COMPLETED | FOLFOX-4 3months Versus 6 Months and Bevacizumab as Adjuvant Therapy for Patients With Stage II/III Colon Cancer |
| NCT00687830 | Phase 3 | COMPLETED | Efficacy of Morning-only Bowel Preparation for Afternoon Colonoscopy. |
| NCT00756548 | Phase 3 | COMPLETED | BLI850-302: BLI850 vs an Approved Active Control Bowel Preparation in Adult Subjects Undergoing Colonoscopy |
| NCT00756977 | Phase 3 | COMPLETED | BLI850 vs an Active Control Bowel Preparation in Adult Subjects Undergoing Colonoscopy |
| NCT00894725 | Phase 3 | COMPLETED | Laparoscopic Versus Open Left Colonic Resection |
| NCT00911170 | Phase 3 | COMPLETED | PAVES: Pegfilgrastim Anti-vascular Endothelial Growth Factor (VEGF) Evaluation Study |
| NCT01092481 | Phase 3 | UNKNOWN | Study Investigating the Role of Oxaliplatin Duration in Modified FOLFOX-6 or CAPOX Regimen as Adjuvant Colon Cancer Therapy |
| NCT01460589 | Phase 3 | ACTIVE_NOT_RECRUITING | Early Commencement of Adjuvant Chemotherapy for Colon Cancer |
| NCT01483443 | Phase 3 | COMPLETED | Oophorectomy Followed by Chemotherapy Versus Chemotherapy Alone in Colorectal Cancer Patients |
| NCT01606098 | Phase 3 | COMPLETED | The Role of Surgery of the Primary Tumour in Patients With Synchronous Unresectable Metastases of Colorectal Cancer |
| NCT01727388 | Phase 3 | COMPLETED | Informativeness to Digital Rectal Examination |
| NCT01918527 | Phase 3 | COMPLETED | Neoadjuvant Chemotherapy Versus Standard Treatment in Patients With Locally Advanced Colon Cancer |
| NCT02254486 | Phase 3 | COMPLETED | Multicenter Randomized Parallel Group Phase III Study Comparing the Bowel Cleansing Efficacy, Safety and Tolerability of NER1006 Versus Trisulfate Solution Using 2-Day Split-Dosing Regimen in Adults |
| NCT02280278 | Phase 3 | UNKNOWN | Cytokine-induced Killer Cell Immunotherapy for Surgical Resected Stage III Colorectal Cancer Patients After Chemotherapy |
| NCT02301286 | Phase 3 | ACTIVE_NOT_RECRUITING | A Trial of Aspirin on Recurrence and Survival in Colon Cancer Patients |
| NCT02448173 | Phase 3 | NOT_YET_RECRUITING | A Multicenter Study of Active Specific Immunotherapy With OncoVax® in Patients With Stage II Colon Cancer |
| NCT02467582 | Phase 3 | TERMINATED | Adjuvant Aspirin Treatment for Colon Cancer Patients |
| NCT02519140 | Phase 3 | WITHDRAWN | Assessing How the Viscosity of Submucosal Gel Injections Helps With Endoscopic Mucosal Resections |
| NCT02572141 | Phase 3 | ACTIVE_NOT_RECRUITING | FOLFOX or CAPOX Perioperative Chemotherapy Versus Postoperative Chemotherapy for Locally Advanced Colon Cancer (OPTICAL) |
| NCT02588248 | Phase 3 | TERMINATED | L-Menthol Injection as a Novel Technique During Colonoscopy |
| NCT02682589 | Phase 3 | UNKNOWN | Open Versus Laparoscopic Complete Mesocolic Excision for Locally Advanced Colon Cancer |
| NCT02912052 | Phase 3 | UNKNOWN | Perioperative Chemotherapy VS Postoperative Chemotherapy for the Treatment of Colon Cancer With Resectable Liver Metastasis |
| NCT02912559 | Phase 3 | ACTIVE_NOT_RECRUITING | Combination Chemotherapy With or Without Atezolizumab in Treating Patients With Stage III Colon Cancer and Deficient DNA Mismatch Repair |
| NCT02928692 | Phase 3 | UNKNOWN | Minocycline Attenuate Postoperative Cognitive Dysfunction and Delirium |
| NCT02967289 | Phase 3 | COMPLETED | IRinotecan and Oxaliplatin for Colon Cancer in Adjuvant Setting |
Related Atlas pages
- Associated diseases: colorectal cancer, susceptibility to, 12, facial dysmorphism-immunodeficiency-livedo-short stature syndrome, POLE-related polyposis and colorectal cancer syndrome, Polymerase proofreading-related adenomatous polyposis, IMAGe syndrome, intrauterine growth retardation, metaphyseal dysplasia, adrenal hypoplasia congenita, genital anomalies, and immunodeficiency, glioblastoma, endometrial cancer, colorectal cancer
- Biomarker drugs (CIViC) (drugs whose response is associated with variants in this gene — CIViC predictive evidence, not targeting): Pembrolizumab
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): adult glioblastoma, cancer or benign tumor, colon carcinoma, colorectal cancer, colorectal cancer, susceptibility to, 12, colorectal carcinoma, cystic fibrosis-gastritis-megaloblastic anemia syndrome, diffuse midline glioma, H3 K27-altered, endometrial cancer, endometrial carcinoma, endometrioid adenocarcinoma, facial dysmorphism-immunodeficiency-livedo-short stature syndrome, familial colorectal cancer, familial colorectal cancer type X, familial ovarian cancer, glioblastoma, hereditary breast carcinoma, IMAGe syndrome, intestinal polyposis syndrome, intrauterine growth retardation, metaphyseal dysplasia, adrenal hypoplasia congenita, genital anomalies, and immunodeficiency, malignant colon neoplasm, neuroepithelial neoplasm, pediatric high-grade glioma, POLD1-related polyposis and colorectal cancer syndrome, POLE-related polyposis and colorectal cancer syndrome, Polymerase proofreading-related adenomatous polyposis, XFE progeroid syndrome