POLK
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Also known as POLQDINP
Summary
POLK (DNA polymerase kappa, HGNC:9183) is a protein-coding gene on chromosome 5q13.3, encoding DNA polymerase kappa (Q9UBT6). DNA polymerase specifically involved in DNA repair.
This gene encodes a member of the DNA polymerase type-Y family of proteins. The encoded protein is a specialized DNA polymerase that catalyzes translesion DNA synthesis, which allows DNA replication in the presence of DNA lesions. Human cell lines lacking a functional copy of this gene exhibit impaired genome integrity and enhanced susceptibility to oxidative damage. Mutations in this gene that impair enzyme activity may be associated with prostate cancer in human patients.
Source: NCBI Gene 51426 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 138 total — 19 pathogenic
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 3 cancer types
- MANE Select transcript:
NM_016218
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9183 |
| Approved symbol | POLK |
| Name | DNA polymerase kappa |
| Location | 5q13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | POLQ, DINP |
| Ensembl gene | ENSG00000122008 |
| Ensembl biotype | protein_coding |
| OMIM | 605650 |
| Entrez | 51426 |
Gene structure
Transcript identifiers
Ensembl transcripts: 24 — 12 protein_coding, 7 nonsense_mediated_decay, 3 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000241436, ENST00000502567, ENST00000503479, ENST00000504026, ENST00000505069, ENST00000505774, ENST00000505975, ENST00000506928, ENST00000507073, ENST00000508526, ENST00000508867, ENST00000509126, ENST00000510815, ENST00000511527, ENST00000514141, ENST00000514296, ENST00000515295, ENST00000863893, ENST00000863894, ENST00000863895, ENST00000863896, ENST00000935335, ENST00000965054, ENST00000965055
RefSeq mRNA: 13 — MANE Select: NM_016218
NM_001345921, NM_001345922, NM_001387110, NM_001387111, NM_001387113, NM_001395893, NM_001395894, NM_001395897, NM_001395899, NM_001395900, NM_001395901, NM_001395902, NM_016218
CCDS: CCDS4030
Canonical transcript exons
ENST00000241436 — 15 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001905813 | 75597934 | 75609991 |
| ENSE00002042888 | 75511891 | 75511914 |
| ENSE00003469008 | 75569340 | 75569492 |
| ENSE00003508905 | 75576780 | 75576933 |
| ENSE00003514052 | 75597747 | 75597789 |
| ENSE00003538293 | 75584760 | 75584926 |
| ENSE00003546232 | 75583293 | 75583417 |
| ENSE00003551080 | 75596222 | 75597178 |
| ENSE00003556900 | 75587026 | 75587058 |
| ENSE00003605273 | 75581209 | 75581448 |
| ENSE00003609956 | 75547010 | 75547157 |
| ENSE00003615761 | 75573738 | 75573869 |
| ENSE00003621979 | 75552472 | 75552591 |
| ENSE00003633049 | 75593878 | 75594049 |
| ENSE00003655186 | 75590344 | 75590440 |
Expression profiles
Bgee: expression breadth ubiquitous, 255 present calls, max score 95.55.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 14.2360 / max 814.1123, expressed in 1732 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 57086 | 13.3474 | 1720 |
| 57087 | 0.7997 | 405 |
| 57088 | 0.0890 | 36 |
Top tissues by expression
259 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 95.55 | gold quality |
| adrenal tissue | UBERON:0018303 | 92.41 | gold quality |
| corpus callosum | UBERON:0002336 | 91.26 | gold quality |
| superficial temporal artery | UBERON:0001614 | 90.93 | gold quality |
| colonic epithelium | UBERON:0000397 | 90.86 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 90.40 | gold quality |
| oviduct epithelium | UBERON:0004804 | 89.91 | gold quality |
| skin of hip | UBERON:0001554 | 89.71 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 89.06 | gold quality |
| monocyte | CL:0000576 | 88.43 | gold quality |
| islet of Langerhans | UBERON:0000006 | 88.28 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 87.95 | gold quality |
| leukocyte | CL:0000738 | 87.87 | gold quality |
| bone marrow cell | CL:0002092 | 87.83 | gold quality |
| lower lobe of lung | UBERON:0008949 | 87.62 | gold quality |
| jejunal mucosa | UBERON:0000399 | 87.60 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 87.24 | gold quality |
| jejunum | UBERON:0002115 | 86.91 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 86.55 | gold quality |
| retina | UBERON:0000966 | 86.53 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 86.30 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.62 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 85.51 | gold quality |
| adipose tissue | UBERON:0001013 | 85.49 | gold quality |
| popliteal artery | UBERON:0002250 | 85.45 | gold quality |
| tibial artery | UBERON:0007610 | 85.45 | gold quality |
| sperm | CL:0000019 | 85.31 | gold quality |
| urinary bladder | UBERON:0001255 | 85.09 | gold quality |
| myocardium | UBERON:0002349 | 84.99 | silver quality |
| synovial joint | UBERON:0002217 | 84.96 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.65 |
| E-GEOD-36552 | no | 67.79 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AHR, ELF4, HSF1, TP53
miRNA regulators (miRDB)
121 targeting POLK, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-512-3P | 99.97 | 67.35 | 1049 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
Literature-anchored findings (GeneRIF, showing 40)
- a role of Pol(kappa) in the extension of mismatched base pairs during normal DNA replication, and in addition, they implicate Pol(kappa) in the mutagenic bypass of T-T dimers (PMID:11842189)
- Translesion synthesis by human DNA polymerase kappa on a DNA template containing a single stereoisomer of dG-(+)- or dG-(-)-anti-N(2)-BPDE. (PMID:11994005)
- In DNA damage, this protein bypasses and extends beyond thymine glycols during DNA synthesis in vitro, preferentially incorporating correct nucleotides (PMID:12145297)
- Polkappa may function as part of the replication machinery itself and could be recruited when replicative complexes are stalled; may affect the accuracy of DNA replication (PMID:12414988)
- Opposite an 8-oxoguanine (8-oxoG) lesion, Polkappa efficiently inserts an A & then proficiently extends from it. Also, Polkappa can perform the extension step after the incorporation of nucleotides opposite these lesion sites by Poldelta. (PMID:12444249)
- Data suggest that the properties of DNA polymerases eta and kappa are consistent with the mutagenic events attributed to estrogen-derived DNA adducts. (PMID:15147214)
- POLK interacts with a C-terminal region of REV1. (PMID:15189446)
- Poliota incorporates a C opposite the gamma-HOPdG adduct with nearly the same efficiency as opposite a nonadducted G residue. The subsequent extension step is performed by Polkappa, which efficiently extends from the C incorporated opposite the adduct. (PMID:15199127)
- POLK does not colocalize in replication foci with PCNA. (PMID:15601657)
- the trans-lesion synthesis enzyme polkappa is specifically required for normal recovery from the BPDE-induced S-phase checkpoint (PMID:15817457)
- POLK causes error-prone and inefficient replication across 8-oxoguanine in ras genes. (PMID:15938713)
- DNA polymerase kappa (Pol kappa) is a specialised low-fidelity DNA polymerase. It is able to perform DNA synthesis across several damaged bases. But when it is misregulated, it will increase genetic instability. (PMID:15989980)
- both Poleta and Polkappa rely on W-C hydrogen bonding for localizing the nascent base pair in the active site for the polymerization reaction to occur (PMID:16055723)
- The sequential action of Poliota and Polkappa promotes efficient and error-free synthesis through the HNE-dG adducts. (PMID:16354708)
- Association of Polkappa with PCNA is regulated by Rad18-mediated PCNA ubiquitination. (PMID:16611994)
- pol kappa is resistant to N(2)-bulk and quantitatively efficient in catalyzing dCTP incorporation opposite bulky guanine N(2)-adducts, particularly the largest (N(2)-BPG) (PMID:16751196)
- promoter of POLK is cis-controlled (PMID:17099721)
- DNA encirclement and other structural features help explain Pol kappa’s ability to extend mismatches and to promote replication through various minor groove DNA lesions. (PMID:17317631)
- Human DNA polymerase kappa inserts dGMP and dCMP within the T mononucleotide repeat, producing an interrupted 12-bp allele. (PMID:18079151)
- Data show that showed that pol kappaDeltaC was more efficient than pol eta by incorporating dCMP opposite both 6alpha- and 6beta-isomeric dG-N(2)-6-E(2) adducts. (PMID:18512958)
- Results show that the DNA polymerase kappa N-clasp is a key structural feature that accounts for the dA adduct blockage and the near-error-free bypass of the dG lesion. (PMID:18931375)
- Downregulation of DNA polymerases kappa is associated with colorectal-adenocarcinomas. (PMID:19117014)
- Y-Family DNA polymerases may use two different dNTP shapes for insertion: a hypothesis and its implications. (PMID:19188081)
- steric gate amino acid tyrosine 112 is required for efficient mismatched-primer extension by human DNA polymerase kappa (PMID:19341290)
- structure of human DNA polymerase kappa with dATP opposite the 8-OxoG DNA lesion (PMID:19492058)
- analysis of the mechanism promoting error-prone synthesis by human DNA polymerase kappa opposite the 7,8-dihydro-8-oxo-2’-deoxyguanosine a (PMID:19542228)
- Translesional DNA synthesis through a C8-guanyl adduct of 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP) in Vitro: REV1 inserts dC opposite the lesion, and DNA polymerase kappa potentially catalyzes extension reaction from the 3’-dC terminus. (PMID:19628463)
- results suggested that amino acids at distinct positions in the active sites of Poleta and Polkappa might enhance 8-oxo-dGTP to favor the syn conformation, and thus direct its misincorporation into DNA. (PMID:19939936)
- The expression of Pol kappa (and Pol iota) is deregulated in gliomas, and upregulation of Pol kappa is associated with poorer prognosis in glioma patients. (PMID:20164241)
- the substitution of alanine for phenylalanine 171 (F171), an amino acid conserved between Pol kappa and its bacterial counterpart Escherichia coli DinB, enhanced the efficiencies of dCMP incorporation opposite (-)- and (+)-trans-anti-BPDE-N(2)-dG 18-fold (PMID:21078407)
- in mammalian cells, both polymerases kappa and iota are necessary for the error-free bypass of N(2)-CEdG and N(2)-CMdG. (PMID:21454642)
- show that the loss of USP1 leads to a dramatic reduction of replication fork speed in a Polkappa-dependent manner (PMID:22157819)
- transcriptional activities of the POLK promoter regions -336/+437 and +20/+437 were significantly reduced by BPDE treatment, indicating that transcription factors in these regions may regulate the transcription of human POLK gene in response to BPDE. (PMID:22227292)
- Data suggest that DNA polymerase kappa (pol kappa) partially protects cells from the mismatch repair (MMR)-dependent cytotoxicity. (PMID:22487424)
- Molecular dynamics simulations show that the near error-free incorporation of dCTP opposite the major benzo[a]pyrene-derived dG lesion is compatible with the Water Mediated and Substrate Assisted (WMSA) mechanism, allowing for an essentially undisturbed pentacovalent phosphorane transition state, and explaining the bypass of this lesion with little mutation by Pol kappa. (PMID:22772988)
- Data indicate that small molecule library screens targeting DNA polymerase kappa would initiate the development of new adjunct cancer therapeutics. (PMID:23056190)
- The results show that hPolkappa uses a classical Streisinger template-slippage mechanism to generate -1 deletions in repetitive sequences. (PMID:23558743)
- Pol eta and Pol kappa are involved in redundant pathways for homologous recombination. (PMID:23731732)
- DNA polymerase kappa-dependent DNA synthesis at stalled replication forks is important for CHK1 activation. (PMID:23799366)
- DNA polymerase kappa rs5744724 polymorphism is associated with lung cancer. (PMID:24012694)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | polk | ENSDARG00000059963 |
| mus_musculus | Polk | ENSMUSG00000021668 |
| rattus_norvegicus | Polk | ENSRNOG00000060626 |
| drosophila_melanogaster | eco | FBGN0035766 |
| caenorhabditis_elegans | WBGENE00017696 |
Paralogs (5): POLI (ENSG00000101751), REV1 (ENSG00000135945), ESCO1 (ENSG00000141446), POLH (ENSG00000170734), ESCO2 (ENSG00000171320)
Protein
Protein identifiers
DNA polymerase kappa — Q9UBT6 (reviewed: Q9UBT6)
Alternative names: DINB protein
All UniProt accessions (5): D6R9M8, D6RAE5, D6RAI7, D6RDX9, Q9UBT6
UniProt curated annotations — full annotation on UniProt →
Function. DNA polymerase specifically involved in DNA repair. Plays an important role in translesion synthesis, where the normal high-fidelity DNA polymerases cannot proceed and DNA synthesis stalls. Depending on the context, it inserts the correct base, but causes frequent base transitions, transversions and frameshifts. Lacks 3’-5’ proofreading exonuclease activity. Forms a Schiff base with 5’-deoxyribose phosphate at abasic sites, but does not have lyase activity.
Subunit / interactions. Interacts with REV1. Forms a quaternary complex with REV1, MAD2L2 and REV3L, where REV3L-bound MAD2L2 and POLK are able to bind simultaneously to REV1 forming the stable translesion synthesis (TLS) machinery therefore bridging the inserter and extender polymerases. Interacts with PCNA.
Subcellular location. Nucleus.
Tissue specificity. Detected at low levels in testis, spleen, prostate and ovary. Detected at very low levels in kidney, colon, brain, heart, liver, lung, placenta, pancreas and peripheral blood leukocytes.
Cofactor. Divalent metal cations. Prefers Mg(2+), but can also use Mn(2+).
Domain organisation. The catalytic core consists of fingers, palm and thumb subdomains, but the fingers and thumb subdomains are much smaller than in high-fidelity polymerases; residues from five sequence motifs of the Y-family cluster around an active site cleft that can accommodate DNA and nucleotide substrates with relaxed geometric constraints, with consequently higher rates of misincorporation and low processivity.
Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Similarity. Belongs to the DNA polymerase type-Y family.
Isoforms (8)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UBT6-1 | 1 | yes |
| Q9UBT6-2 | 2 | |
| Q9UBT6-3 | 3 | |
| Q9UBT6-4 | 4 | |
| Q9UBT6-5 | 5 | |
| Q9UBT6-6 | 6 | |
| Q9UBT6-7 | 7 | |
| Q9UBT6-8 | 8 |
RefSeq proteins (13): NP_001332850, NP_001332851, NP_001374039, NP_001374040, NP_001374042, NP_001382822, NP_001382823, NP_001382826, NP_001382828, NP_001382829, NP_001382830, NP_001382831, NP_057302* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001126 | UmuC | Domain |
| IPR006642 | Rad18_UBZ4 | Domain |
| IPR017961 | DNA_pol_Y-fam_little_finger | Domain |
| IPR022880 | DNApol_IV | Family |
| IPR024728 | PolY_HhH_motif | Conserved_site |
| IPR036775 | DNA_pol_Y-fam_lit_finger_sf | Homologous_superfamily |
| IPR043128 | Rev_trsase/Diguanyl_cyclase | Homologous_superfamily |
| IPR043502 | DNA/RNA_pol_sf | Homologous_superfamily |
| IPR050116 | DNA_polymerase-Y | Family |
Pfam: PF00817, PF11798, PF11799
Enzyme classification (BRENDA):
- EC 2.7.7.7 — DNA-directed DNA polymerase (BRENDA: 139 organisms, 372 substrates, 325 inhibitors, 281 Km, 239 kcat entries)
Substrate kinetics (BRENDA)
52 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| DATP | 0.0003–3.2 | 52 |
| DCTP | 0.0001–2.5 | 46 |
| DTTP | 0.0003–47.4 | 46 |
| DGTP | 0.0002–2.5 | 29 |
| DEOXYNUCLEOSIDE TRIPHOSPHATE | 0.0012–0.64 | 12 |
| DNAN | — | 7 |
| 7-DEAZA-2’-DEOXYADENOSINE 5’-TRIPHOSPHATE | 0.0011–0.344 | 5 |
| N1-METHYL-2’-DEOXYADENOSINE 5’-TRIPHOSPHATE | 0.223–0.403 | 5 |
| 2-AMINOPURINE-2’-DEOXY-D-RIBOSE 5’-TRIPHOSPHATE | 0.006–0.0144 | 2 |
| 2-THIO-DCTP | 0.067–0.98 | 2 |
| 5-METHYL-DCTP | 0.013–1.22 | 2 |
| DAMP:DG | 1.153–1.42 | 2 |
| DCMP:DG | — | 2 |
| DGMP:DG | 0.263–0.3511 | 2 |
| DTMP:DG | 1.26–1.43 | 2 |
Catalyzed reactions (Rhea), 1 shown:
- DNA(n) + a 2’-deoxyribonucleoside 5’-triphosphate = DNA(n+1) + diphosphate (RHEA:22508)
UniProt features (82 total): helix 23, strand 15, binding site 11, splice variant 10, sequence conflict 6, sequence variant 5, turn 5, zinc finger region 2, mutagenesis site 2, chain 1, domain 1, region of interest 1
Structure
Experimental structures (PDB)
19 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6CST | X-RAY DIFFRACTION | 2 |
| 1T94 | X-RAY DIFFRACTION | 2.4 |
| 5W2C | X-RAY DIFFRACTION | 2.5 |
| 4U6P | X-RAY DIFFRACTION | 2.59 |
| 4BA9 | X-RAY DIFFRACTION | 2.73 |
| 4U7C | X-RAY DIFFRACTION | 2.8 |
| 6BRX | X-RAY DIFFRACTION | 2.8 |
| 5W2A | X-RAY DIFFRACTION | 2.9 |
| 5T14 | X-RAY DIFFRACTION | 3 |
| 2OH2 | X-RAY DIFFRACTION | 3.05 |
| 6BS1 | X-RAY DIFFRACTION | 3.15 |
| 2W7O | X-RAY DIFFRACTION | 3.16 |
| 3IN5 | X-RAY DIFFRACTION | 3.2 |
| 4GK5 | X-RAY DIFFRACTION | 3.21 |
| 3PZP | X-RAY DIFFRACTION | 3.34 |
| 7NV0 | ELECTRON MICROSCOPY | 3.4 |
| 2W7P | X-RAY DIFFRACTION | 3.71 |
| 7NV1 | ELECTRON MICROSCOPY | 6.4 |
| 2LSI | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UBT6-F1 | 70.62 | 0.49 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (11): 642; 646; 779; 782; 797; 801; 107; 198; 199; 624; 627
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 198 | loss of dna polymerase activity; when associated with a-199. |
| 199 | loss of dna polymerase activity; when associated with d-198. |
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-5655862 | Translesion synthesis by POLK |
| R-HSA-5656169 | Termination of translesion DNA synthesis |
| R-HSA-5685942 | HDR through Homologous Recombination (HRR) |
| R-HSA-5696397 | Gap-filling DNA repair synthesis and ligation in GG-NER |
| R-HSA-5696400 | Dual Incision in GG-NER |
| R-HSA-6782135 | Dual incision in TC-NER |
| R-HSA-6782210 | Gap-filling DNA repair synthesis and ligation in TC-NER |
MSigDB gene sets: 394 (showing top):
GOBP_DNA_TEMPLATED_DNA_REPLICATION_MAINTENANCE_OF_FIDELITY, GOBP_REGULATION_OF_DOUBLE_STRAND_BREAK_REPAIR, GOBP_RNA_TEMPLATED_DNA_BIOSYNTHETIC_PROCESS, RNGTGGGC_UNKNOWN, RRAGTTGT_UNKNOWN, GOBP_REGULATION_OF_DNA_RECOMBINATION, KANG_DOXORUBICIN_RESISTANCE_UP, GOBP_CELLULAR_RESPONSE_TO_UV, TGCACTT_MIR519C_MIR519B_MIR519A, GOBP_CELLULAR_RESPONSE_TO_LIGHT_STIMULUS, GOBP_NEGATIVE_REGULATION_OF_DNA_REPAIR, GOBP_NEGATIVE_REGULATION_OF_DNA_RECOMBINATION, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GEORGES_CELL_CYCLE_MIR192_TARGETS, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP
GO Biological Process (8): DNA replication (GO:0006260), DNA repair (GO:0006281), nucleotide-excision repair, DNA gap filling (GO:0006297), DNA damage response (GO:0006974), translesion synthesis (GO:0019985), cellular response to UV (GO:0034644), error-prone translesion synthesis (GO:0042276), DNA biosynthetic process (GO:0071897)
GO Molecular Function (8): damaged DNA binding (GO:0003684), DNA-directed DNA polymerase activity (GO:0003887), zinc ion binding (GO:0008270), DNA binding (GO:0003677), transferase activity (GO:0016740), nucleotidyltransferase activity (GO:0016779), DNA polymerase activity (GO:0034061), metal ion binding (GO:0046872)
GO Cellular Component (4): nucleus (GO:0005634), nucleoplasm (GO:0005654), nuclear body (GO:0016604), site of DNA damage (GO:0090734)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Translesion synthesis by Y family DNA polymerases bypasses lesions on DNA template | 2 |
| Global Genome Nucleotide Excision Repair (GG-NER) | 2 |
| Transcription-Coupled Nucleotide Excision Repair (TC-NER) | 2 |
| HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA) | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| DNA metabolic process | 4 |
| DNA biosynthetic process | 2 |
| cellular anatomical structure | 2 |
| DNA damage response | 1 |
| nucleotide-excision repair | 1 |
| cellular response to stress | 1 |
| DNA damage tolerance | 1 |
| DNA synthesis involved in DNA replication | 1 |
| response to UV | 1 |
| cellular response to light stimulus | 1 |
| translesion synthesis | 1 |
| nucleic acid biosynthetic process | 1 |
| DNA binding | 1 |
| DNA polymerase activity | 1 |
| transition metal ion binding | 1 |
| nucleic acid binding | 1 |
| catalytic activity | 1 |
| transferase activity, transferring phosphorus-containing groups | 1 |
| nucleotidyltransferase activity | 1 |
| catalytic activity, acting on DNA | 1 |
| cation binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| nucleoplasm | 1 |
| intracellular membraneless organelle | 1 |
| chromosome | 1 |
Protein interactions and networks
STRING
1302 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| POLK | POLL | Q9UGP5 | 754 |
| POLK | REV3L | O60673 | 717 |
| POLK | POLM | Q9NP87 | 644 |
| POLK | RAD51 | Q06609 | 605 |
| POLK | POLQ | O75417 | 586 |
| POLK | POLH | Q9Y253 | 577 |
| POLK | POLN | Q7Z5Q5 | 559 |
| POLK | POLD2 | P49005 | 555 |
| POLK | MAD2L2 | Q9UI95 | 514 |
| POLK | REV1 | Q9UBZ9 | 463 |
| POLK | RAD18 | Q9NS91 | 446 |
| POLK | POLD1 | P28340 | 433 |
| POLK | POLI | Q9UNA4 | 420 |
| POLK | CLPB | Q9H078 | 408 |
| POLK | UNG | P13051 | 399 |
IntAct
22 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PARVG | LIMS1 | psi-mi:“MI:0914”(association) | 0.640 |
| SPART | ITCH | psi-mi:“MI:0914”(association) | 0.640 |
| KCTD17 | CBX4 | psi-mi:“MI:0914”(association) | 0.530 |
| POLK | HSP90B1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| POLK | HSPA5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| POLK | LMNA | psi-mi:“MI:0915”(physical association) | 0.400 |
| POLK | H3-4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| DTD1 | POLK | psi-mi:“MI:0915”(physical association) | 0.400 |
| KCTD2 | POLK | psi-mi:“MI:0915”(physical association) | 0.400 |
| Rhoa | CLK2 | psi-mi:“MI:0914”(association) | 0.350 |
| Kctd5 | psi-mi:“MI:0914”(association) | 0.350 | |
| POLK | TIA1 | psi-mi:“MI:0914”(association) | 0.350 |
| KCTD17 | CBX4 | psi-mi:“MI:0914”(association) | 0.350 |
| RBM39 | RPS3A | psi-mi:“MI:0914”(association) | 0.350 |
| KCTD17 | PXDNL | psi-mi:“MI:0914”(association) | 0.350 |
| SLC1A3 | DDX11L8 | psi-mi:“MI:0914”(association) | 0.350 |
| POLK | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (549): POLK (Affinity Capture-MS), POLK (Affinity Capture-MS), H3F3A (Affinity Capture-MS), RAD51 (Affinity Capture-MS), RBM4 (Affinity Capture-MS), STAT6 (Affinity Capture-MS), TIA1 (Affinity Capture-MS), UBE2V2 (Affinity Capture-MS), PIAS1 (Affinity Capture-MS), NOLC1 (Affinity Capture-MS), SRA1 (Affinity Capture-MS), CD2BP2 (Affinity Capture-MS), APOL2 (Affinity Capture-MS), RPAP1 (Affinity Capture-MS), KCTD5 (Affinity Capture-MS)
ESM2 similar proteins: A0A1P8ASY1, A3EWL3, A4PBL4, B9EUM5, B9FL70, B9G8P1, F4HZF0, F4I9Q5, F4IL57, F4J2M6, F4JAA5, L0N7N1, O09053, O70445, O81635, O93530, P35251, P39875, P45951, Q0IMS9, Q0PCS3, Q10MN5, Q14191, Q3YK19, Q5SXJ3, Q6JDV7, Q6P158, Q7X7H4, Q7Y1C4, Q7Y1C5, Q803U7, Q8L7Y8, Q8L840, Q8W1Y3, Q941I6, Q99728, Q9C6G0, Q9FT70, Q9FT72, Q9I920
Diamond homologs: A0AK80, A0KHD5, A0KTR5, A0Q6K9, A1A7U2, A1KUQ3, A1U339, A1WY69, A2RNH9, A3N148, A4TPK8, A4W6W8, A5FSS1, A5IH02, A6W1V6, A7FLI9, A7MEN4, A7NC07, A7ZHZ2, A7ZWJ6, A8AKQ2, A8FYV3, A9MNS1, A9MY13, B0BPX9, B0TZS5, B1AJ79, B1J100, B1KD33, B1YK83, B2FLR2, B2SH34, B2U3S3, B4SIF5, B8DBV7, B8F542, B8FBE8, C1KWR9, O74944, P34409
SIGNOR signaling
0 interactions.
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 3 cancer types — LUSC, MEL, UCEC.
Clinical variants and AI predictions
ClinVar
138 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 19 |
| Likely pathogenic | 0 |
| Uncertain significance | 93 |
| Likely benign | 8 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (19)
| Variant ID | HGVS | Classification |
|---|---|---|
| 190430 | NM_016218.6(POLK):c.*66T>C | Pathogenic |
| 218216 | NM_016218.6(POLK):c.1256A>G (p.Glu419Gly) | Pathogenic |
| 218217 | NM_016218.6(POLK):c.1284G>A (p.Ala428=) | Pathogenic |
| 218218 | NM_016218.6(POLK):c.1324C>T (p.Leu442Phe) | Pathogenic |
| 218219 | NM_016218.6(POLK):c.1289A>G (p.Glu430Gly) | Pathogenic |
| 218220 | NM_016218.6(POLK):c.1341G>A (p.Gln447=) | Pathogenic |
| 218221 | NM_016218.6(POLK):c.1345G>A (p.Glu449Lys) | Pathogenic |
| 218222 | NM_016218.6(POLK):c.2033C>T (p.Ser678Phe) | Pathogenic |
| 218223 | NM_016218.6(POLK):c.2192T>A (p.Leu731His) | Pathogenic |
| 218224 | NM_016218.6(POLK):c.1582A>T (p.Ser528Cys) | Pathogenic |
| 218225 | NM_016218.6(POLK):c.1652A>T (p.Asp551Val) | Pathogenic |
| 218226 | NM_016218.6(POLK):c.1692G>A (p.Lys564=) | Pathogenic |
| 218227 | NM_016218.6(POLK):c.1741G>A (p.Asp581Asn) | Pathogenic |
| 218228 | NM_016218.6(POLK):c.1381A>G (p.Lys461Glu) | Pathogenic |
| 218229 | NM_016218.6(POLK):c.1460T>C (p.Ile487Thr) | Pathogenic |
| 218230 | NM_016218.6(POLK):c.464T>C (p.Phe155Ser) | Pathogenic |
| 218232 | NM_016218.6(POLK):c.461G>A (p.Gly154Glu) | Pathogenic |
| 218233 | NM_016218.6(POLK):c.512T>C (p.Phe171Ser) | Pathogenic |
| 218235 | NM_016218.6(POLK):c.2598T>G (p.Asp866Glu) | Pathogenic |
SpliceAI
5634 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:121432913:AATAC:A | donor_loss | 1.0000 |
| 3:121432914:ATAC:A | donor_loss | 1.0000 |
| 3:121432915:TA:T | donor_loss | 1.0000 |
| 3:121432916:AC:A | donor_loss | 1.0000 |
| 3:121432917:C:CA | donor_loss | 1.0000 |
| 3:121433029:CAATC:C | acceptor_gain | 1.0000 |
| 3:121433034:CTA:C | acceptor_gain | 1.0000 |
| 3:121433037:C:CC | acceptor_gain | 1.0000 |
| 3:121433040:CA:C | acceptor_gain | 1.0000 |
| 3:121433041:A:AC | acceptor_gain | 1.0000 |
| 3:121433041:A:C | acceptor_gain | 1.0000 |
| 3:121439990:A:AC | donor_gain | 1.0000 |
| 3:121439991:C:CC | donor_gain | 1.0000 |
| 3:121440114:TCC:T | acceptor_gain | 1.0000 |
| 3:121440115:CC:C | acceptor_gain | 1.0000 |
| 3:121440115:CCC:C | acceptor_gain | 1.0000 |
| 3:121440116:CC:C | acceptor_gain | 1.0000 |
| 3:121440116:CCTA:C | acceptor_loss | 1.0000 |
| 3:121440117:C:CC | acceptor_gain | 1.0000 |
| 3:121449310:ATTAC:A | donor_loss | 1.0000 |
| 3:121449311:TTAC:T | donor_loss | 1.0000 |
| 3:121449312:TAC:T | donor_loss | 1.0000 |
| 3:121449313:A:T | donor_loss | 1.0000 |
| 3:121449314:CCTG:C | donor_loss | 1.0000 |
| 3:121467639:CT:C | acceptor_gain | 1.0000 |
| 3:121467641:C:CC | acceptor_gain | 1.0000 |
| 3:121468301:CTA:C | donor_loss | 1.0000 |
| 3:121468303:A:AC | donor_gain | 1.0000 |
| 3:121468303:A:AT | donor_loss | 1.0000 |
| 3:121468303:ACCTG:A | donor_gain | 1.0000 |
AlphaMissense
5838 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:75569470:C:A | A129D | 0.998 |
| 5:75573772:T:A | V148D | 0.998 |
| 5:75573799:C:A | A157D | 0.998 |
| 5:75581442:A:C | S310R | 0.998 |
| 5:75581444:T:A | S310R | 0.998 |
| 5:75581444:T:G | S310R | 0.998 |
| 5:75593888:T:A | V456D | 0.998 |
| 5:75547097:A:C | K25N | 0.997 |
| 5:75547097:A:T | K25N | 0.997 |
| 5:75573749:T:A | N140K | 0.997 |
| 5:75573749:T:G | N140K | 0.997 |
| 5:75573820:T:C | L164P | 0.997 |
| 5:75581440:C:A | A309D | 0.997 |
| 5:75583328:A:C | S324R | 0.997 |
| 5:75583330:T:A | S324R | 0.997 |
| 5:75583330:T:G | S324R | 0.997 |
| 5:75593914:T:C | F465L | 0.997 |
| 5:75593916:T:A | F465L | 0.997 |
| 5:75593916:T:G | F465L | 0.997 |
| 5:75594044:T:C | L508P | 0.997 |
| 5:75569424:G:C | A114P | 0.996 |
| 5:75573760:G:C | R144T | 0.996 |
| 5:75573769:G:A | G147D | 0.996 |
| 5:75581407:G:C | R298P | 0.996 |
| 5:75581434:T:C | L307P | 0.996 |
| 5:75583299:C:A | A314D | 0.996 |
| 5:75593904:G:C | K461N | 0.996 |
| 5:75593904:G:T | K461N | 0.996 |
| 5:75547096:A:T | K25I | 0.995 |
| 5:75569404:A:C | D107A | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000005055 (5:75577076 A>T), RS1000017307 (5:75554545 G>C), RS1000071936 (5:75546782 C>T), RS1000151374 (5:75539648 G>A), RS1000174675 (5:75543932 C>A), RS1000192902 (5:75554776 G>A), RS1000228553 (5:75586486 A>T), RS1000245773 (5:75593627 T>G), RS1000275099 (5:75545511 A>G), RS1000387704 (5:75541310 A>AAAAAAC), RS1000465316 (5:75598751 T>C), RS1000522047 (5:75605832 G>A,C), RS1000541015 (5:75557923 G>T), RS1000578566 (5:75558467 C>G,T), RS1000702303 (5:75520481 A>C)
Disease associations
OMIM: gene MIM:605650 | disease phenotypes: MIM:616351
GenCC curated gene-disease
Mondo (3): prostate cancer (MONDO:0008315), intellectual disability, autosomal dominant 34 (MONDO:0014599), intellectual disability (MONDO:0001071)
Orphanet (2): Familial prostate cancer (Orphanet:1331), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST007293_121 | Body fat distribution (arm fat ratio) | 2.000000e-10 |
| GCST007293_23 | Body fat distribution (arm fat ratio) | 3.000000e-18 |
| GCST007293_49 | Body fat distribution (arm fat ratio) | 1.000000e-14 |
| GCST007295_54 | Body fat distribution (leg fat ratio) | 6.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004341 | body fat distribution |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5365 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 11,194 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1014 | CANDESARTAN CILEXETIL | 4 | 11,194 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
8 potent at pChembl≥5 of 16 total, top 8 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.47 | IC50 | 3400 | nM | MANOALIDE |
| 5.25 | IC50 | 5600 | nM | MANOALIDE |
| 5.25 | IC50 | 5600 | nM | CANDESARTAN CILEXETIL |
| 5.25 | IC50 | 5600 | nM | CHEMBL3960997 |
| 5.17 | IC50 | 6800 | nM | CHEMBL1917196 |
| 5.09 | IC50 | 8100 | nM | CHEMBL1917198 |
| 5.04 | IC50 | 9200 | nM | CANDESARTAN CILEXETIL |
| 5.01 | Ki | 9850 | nM | PINOPHILIN A |
PubChem BioAssay actives
8 with measured affinity, of 993 total; 6 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2R)-2-hydroxy-3-[(2R,6R)-6-hydroxy-5-[(E)-4-methyl-6-(2,6,6-trimethylcyclohexen-1-yl)hex-3-enyl]-3,6-dihydro-2H-pyran-2-yl]-2H-furan-5-one | 1315755: Inhibition of human DNA polymerase kappa (19 to 526 residues) preincubated for 15 mins followed by replicating non-damaged DNA substrate addition measured after 30 mins in presence of dCTP and dGTP by radioactive gel-based primer extension assay | ic50 | 3.4000 | uM |
| 3-[3-tert-butylsulfanyl-1-[(4-chlorophenyl)methyl]-5-propan-2-yl-2,3-dihydro-1H-inden-2-yl]-2,2-dimethylpropanoic acid | 1315756: Inhibition of human DNA polymerase kappa (19 to 526 residues)-mediated TLS past acrolein derived ring-opened reduced form of gamma-HOPdG lesions preincubated for 15 mins followed by DNA substrate addition measured after 30 mins in presence of dCTP and dGTP by radioactive gel-based primer extension assay | ic50 | 5.6000 | uM |
| Candesartan Cilexetil | 1315756: Inhibition of human DNA polymerase kappa (19 to 526 residues)-mediated TLS past acrolein derived ring-opened reduced form of gamma-HOPdG lesions preincubated for 15 mins followed by DNA substrate addition measured after 30 mins in presence of dCTP and dGTP by radioactive gel-based primer extension assay | ic50 | 5.6000 | uM |
| (5,8-dioxonaphthalen-1-yl) dodecanoate | 627964: Inhibition of C-terminal His6-tagged human DNA polymerase kappa (amino acids 1 to 560) using poly(dA)/oligo(dT)18 (A/T = 2/1) and dTTP as the DNA template-primer and nucleotide substrate after 60 mins | ic50 | 6.8000 | uM |
| (5,8-dioxonaphthalen-1-yl) (Z)-octadec-9-enoate | 627964: Inhibition of C-terminal His6-tagged human DNA polymerase kappa (amino acids 1 to 560) using poly(dA)/oligo(dT)18 (A/T = 2/1) and dTTP as the DNA template-primer and nucleotide substrate after 60 mins | ic50 | 8.1000 | uM |
| [(7S,8S,8aS)-8-hydroxy-7-methyl-6-oxo-3-[(E)-prop-1-enyl]-8,8a-dihydro-1H-isochromen-7-yl] 2,4-dihydroxy-6-methylbenzoate | 654367: Competitive inhibition of human C-terminal-His6-tagged DNA polymerase kappa expressed in Escherichia coli using dTTP as substrate by Dixon plot analysis | ki | 9.8500 | uM |
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| 2’-deoxycytidine 5’-triphosphate | increases reaction, increases stability, affects binding, decreases reaction | 2 |
| Hydrogen Peroxide | decreases response to substance, increases expression, decreases reaction | 2 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | affects expression, decreases reaction, increases mutagenesis | 2 |
| N6-(2-hydroxy-3-buten-1-yl)-2’-deoxyadenosine | decreases activity | 1 |
| N(2)-furfuryl-deoxyguanosine | increases reaction, increases stability | 1 |
| N-(2’-deoxyguanosin-8-yl)-3-aminobenzanthrone | affects binding, decreases reaction | 1 |
| TAK-243 | increases sumoylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| diepoxybutane | affects binding, decreases activity | 1 |
| trichostatin A | affects expression, decreases reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| 2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridine | affects activity | 1 |
| 2’-deoxyadenosine | affects binding, decreases activity | 1 |
| MK-886 | decreases activity | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| N-(deoxyguanosin-8-yl)-2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridine | affects activity | 1 |
| TDO inhibitor LM10 | decreases expression | 1 |
| abrine | increases expression | 1 |
| 2-amino-1-methyl-6-phenolimidazo(4,5-b)pyridine-DNA adduct | affects activity | 1 |
| 2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide | decreases expression | 1 |
| bisphenol S | increases methylation | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Irinotecan | decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Benzene | affects expression | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Clorgyline | increases expression | 1 |
| Deoxyadenosines | decreases activity | 1 |
| Doxorubicin | decreases expression | 1 |
ChEMBL screening assays
22 unique, capped per target: 20 binding, 2 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1023118 | Binding | Inhibition of human DNA polymerase kappa | Penicilliols A and B, novel inhibitors specific to mammalian Y-family DNA polymerases. — Bioorg Med Chem |
| CHEMBL1794536 | Functional | PUBCHEM_BIOASSAY: qHTS for Inhibitors of Polymerase Kappa. (Class of assay: confirmatory) [Related pubchem assays (depositor defined):AID588638] | PubChem BioAssay data set |
Cellosaurus cell lines
15 cell lines: 14 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_4W26 | 293 TRE/FLAG-POLK | Transformed cell line | Female |
| CVCL_4W71 | POLK F171A MSH- | Cancer cell line | Male |
| CVCL_4W72 | POLK KO hetero MSH- | Cancer cell line | Male |
| CVCL_4W73 | POLK KO homo MSH- | Cancer cell line | Male |
| CVCL_JG97 | POLK KO-POLH-/- | Cancer cell line | Male |
| CVCL_JG98 | POLZ Y2779F-POLK+/- | Cancer cell line | Male |
| CVCL_JH00 | POLK KO-CD comp | Cancer cell line | Male |
| CVCL_JH01 | POLK CD | Cancer cell line | Male |
| CVCL_JH02 | POLK CD MSH- | Cancer cell line | Male |
| CVCL_JH03 | POLK SG MSH- | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
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- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): intellectual disability, autosomal dominant 34