POLL
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Summary
POLL (DNA polymerase lambda, HGNC:9184) is a protein-coding gene on chromosome 10q24.32, encoding DNA polymerase lambda (Q9UGP5). DNA polymerase that functions in several pathways of DNA repair.
This gene encodes a DNA polymerase. DNA polymerases catalyze DNA-template-directed extension of the 3’-end of a DNA strand. This particular polymerase, which is a member of the X family of DNA polymerases, likely plays a role in non-homologous end joining and other DNA repair processes. Alternatively spliced transcript variants have been described.
Source: NCBI Gene 27343 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 118 total — 1 pathogenic
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_001174084
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9184 |
| Approved symbol | POLL |
| Name | DNA polymerase lambda |
| Location | 10q24.32 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000166169 |
| Ensembl biotype | protein_coding |
| OMIM | 606343 |
| Entrez | 27343 |
Gene structure
Transcript identifiers
Ensembl transcripts: 54 — 50 protein_coding, 4 protein_coding_CDS_not_defined
ENST00000299206, ENST00000339310, ENST00000370162, ENST00000370168, ENST00000370169, ENST00000370172, ENST00000413344, ENST00000415897, ENST00000426919, ENST00000429502, ENST00000430045, ENST00000454524, ENST00000461587, ENST00000463515, ENST00000470140, ENST00000485369, ENST00000628479, ENST00000882355, ENST00000882356, ENST00000882357, ENST00000882358, ENST00000882359, ENST00000882360, ENST00000882361, ENST00000882362, ENST00000882363, ENST00000882364, ENST00000882365, ENST00000882366, ENST00000882367, ENST00000937304, ENST00000937305, ENST00000937306, ENST00000937307, ENST00000937308, ENST00000937309, ENST00000937310, ENST00000937311, ENST00000937312, ENST00000937313, ENST00000937314, ENST00000937315, ENST00000937316, ENST00000937317, ENST00000937318, ENST00000937319, ENST00000937320, ENST00000937321, ENST00000937322, ENST00000942758, ENST00000942759, ENST00000942760, ENST00000942761, ENST00000942762
RefSeq mRNA: 4 — MANE Select: NM_001174084
NM_001174084, NM_001174085, NM_001308382, NM_013274
CCDS: CCDS7513, CCDS76332
Canonical transcript exons
ENST00000370162 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001424221 | 101587822 | 101588257 |
| ENSE00003462420 | 101582763 | 101582891 |
| ENSE00003475842 | 101585316 | 101585478 |
| ENSE00003503918 | 101578882 | 101579817 |
| ENSE00003508364 | 101583508 | 101583681 |
| ENSE00003567328 | 101585862 | 101586156 |
| ENSE00003626756 | 101580248 | 101580416 |
| ENSE00003889827 | 101584602 | 101584919 |
| ENSE00003891177 | 101587246 | 101587406 |
Expression profiles
Bgee: expression breadth ubiquitous, 240 present calls, max score 93.15.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.9084 / max 231.5970, expressed in 1791 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 111090 | 12.7683 | 1791 |
| 111088 | 0.0727 | 13 |
| 111089 | 0.0674 | 19 |
Top tissues by expression
276 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 93.15 | gold quality |
| body of pancreas | UBERON:0001150 | 93.02 | gold quality |
| left testis | UBERON:0004533 | 91.95 | gold quality |
| right testis | UBERON:0004534 | 91.86 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 90.90 | gold quality |
| blood | UBERON:0000178 | 90.68 | gold quality |
| body of stomach | UBERON:0001161 | 90.67 | gold quality |
| granulocyte | CL:0000094 | 90.55 | gold quality |
| apex of heart | UBERON:0002098 | 90.23 | gold quality |
| adenohypophysis | UBERON:0002196 | 90.14 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 90.13 | gold quality |
| pituitary gland | UBERON:0000007 | 90.02 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 89.97 | gold quality |
| testis | UBERON:0000473 | 89.89 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 89.72 | gold quality |
| thyroid gland | UBERON:0002046 | 89.68 | gold quality |
| right adrenal gland | UBERON:0001233 | 89.63 | gold quality |
| left ovary | UBERON:0002119 | 89.62 | gold quality |
| gastrocnemius | UBERON:0001388 | 89.42 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 89.35 | gold quality |
| metanephros cortex | UBERON:0010533 | 89.21 | gold quality |
| muscle of leg | UBERON:0001383 | 89.05 | gold quality |
| right ovary | UBERON:0002118 | 89.04 | gold quality |
| stomach | UBERON:0000945 | 88.96 | gold quality |
| mucosa of stomach | UBERON:0001199 | 88.82 | gold quality |
| pancreas | UBERON:0001264 | 88.66 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 88.65 | gold quality |
| lower esophagus | UBERON:0013473 | 88.59 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 88.59 | gold quality |
| right lobe of liver | UBERON:0001114 | 88.53 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.97 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CREB1, SP1, TP53, VSX2
miRNA regulators (miRDB)
22 targeting POLL, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-LET-7D-5P | 99.96 | 71.76 | 1632 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-6892-3P | 99.68 | 66.40 | 1178 |
| HSA-MIR-486-3P | 99.51 | 66.82 | 1901 |
| HSA-MIR-149-5P | 99.25 | 67.16 | 1315 |
| HSA-MIR-6510-5P | 99.14 | 66.59 | 1081 |
| HSA-MIR-7977 | 98.65 | 66.18 | 2590 |
| HSA-MIR-4710 | 98.61 | 65.96 | 1048 |
| HSA-MIR-6873-5P | 98.45 | 66.14 | 1417 |
| HSA-MIR-4456 | 97.50 | 64.88 | 1678 |
| HSA-MIR-3192-5P | 96.98 | 65.76 | 1926 |
| HSA-MIR-184 | 94.24 | 64.40 | 152 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- role in DNA repair (PMID:11821417)
- role in dna replication and DNA repair (PMID:11974915)
- complex between PCNA and pol lambda may play an important role in the bypass of abasic sites in human cells (PMID:12368291)
- DNA polymerase lambda has an intrinsic terminal deoxyribonucleotidyl transferase activity that preferentially adds pyrimidines onto 3’OH ends of DNA oligonucleotides and elongates an RNA primer hybridized to a DNA template. (PMID:12683997)
- mammalian Pol lambda has a role in non-homologous end-joining (PMID:12829698)
- Polymerase lambda is the primary gap-filling polymerase for accurate nonhomologous end joining (PMID:14561766)
- pol lambda Phe506Arg/Gly mutants possess very low polymerase and terminal transferase activities as well as greatly reduced abilities for processive DNA synthesis (PMID:14627824)
- fills short-patched DNA gaps in base excision repair pathways and participates in mammalian nonhomologous end-joining pathways to repair double-stranded DNA breaks (PMID:15157109)
- Results link p53 status with POLkappa expression and suggest that loss of p53 function may in part contribute to the observed POLkappa upregulation in human lung cancers. (PMID:15202001)
- A molecular mechanism is suggested for the observed high in vivo rate of frameshift generation by pol lambda and the remarkable ability of pol lambda to promote microhomology pairing between two DNA strands. (PMID:15350147)
- A helix-hairpin-helix domain of DNA polymerase lambda is important for primer binding and/or for proliferating cell nuclear antigen interaction. (PMID:15358682)
- determined that Fyn phosphorylated MAP-2c on tyrosine 67 (PMID:15537631)
- crystal structures of Pol lambda representing three steps in filling a single-nucleotide gap (PMID:15608652)
- Human DNA polymerase kappa, an error-prone enzyme that is up-regulated in lung cancers, induces DNA breaks and stimulates DNA exchanges as well as aneuploidy. (PMID:15665310)
- Results suggest that Pol lambda plays a role in the short-patch base excision repair rather than contributes to the long-patch base excision repair pathway. (PMID:15979954)
- DNA polymerase lambda is phosphorylated in vitro by several cyclin-dependent kinase/cyclin complexes, including Cdk2/cyclin A, in its proline-serine-rich domain. (PMID:16174846)
- DNA polymerase lambda has the ability to create base pair mismatches and human replication protein A can suppress this intrinsic in vitro mutator phenotype. (PMID:16522650)
- DNA polymerase fidelity is controlled not by an accessory protein or a proofreading exonuclease domain but by an internal regulatory domain (PMID:16675458)
- DNA polymerase lambda is unable to differentiate between matched and mismatched termini during the DNA binding step, thus accounting for the relatively high efficiency of mismatch extension. (PMID:16807316)
- Kinetic studies on human DNA polymerase lambda reveal roles of a downstream strand and the 5’-terminal moieties (PMID:17005572)
- The erroneous nucleotide incorporations catalyzed by DNA polymerases lambda and beta as well as the subsequent ligation catalyzed by a DNA ligase during base excision repair are a threat to genomic integrity. (PMID:17321545)
- cloning, expression and tissue distribution in normal liver and hepatoma (PMID:17653665)
- DNA pol lambda active site residue tyrosine 505 determined the nucleotide selectivity opposite 1,2-dihydro-2-oxoadenine during error-free bypass of the 1,2-dihydro-2-oxoadenine lesion. (PMID:17666409)
- capacity of Pol lambda either to insert opposite 8oxoG or to extend correct base pairs containing such a damage could be beneficial for its role in NHEJ (PMID:17686665)
- Pol lambda is stabilized during cell cycle progression in late S and G2 phases, most likely allowing Pol lambda to correctly conduct repair of damaged DNA during and after S phase. (PMID:18688254)
- analysis of human DNA polymerase lambda with Mg2+ and Mn2+ from ab initio quantum mechanical/molecular mechanical studies (PMID:18692600)
- RAGE is under genetic selection in the non-African populations. (PMID:19060005)
- replication protein A and proliferating cell nuclear antigen act as molecular switches to activate the DNA pol lambda- dependent highly efficient and faithful repair of A:8-oxo-G mismatches in human cells and to repress DNA pol beta activity. (PMID:19104052)
- dATP was a preferential substrate for DNA polymerase beta and dGMP was the only substrate for DNA polymerase lambda. (PMID:19120024)
- These experiments suggest that polymerase lambda does not undergo major conformational changes during the catalysis in the solution phase. (PMID:19467241)
- when bound to a 2-nucleotide gap, Pol lambda scrunches the template strand and binds the additional uncopied template base in an extrahelical position within a binding pocket that comprises three conserved amino acids. (PMID:19701199)
- a natural mutator variant of human DNA polymerase lambda promotes chromosomal instability by compromising NHEJ (PMID:19806195)
- observe specific recruitment of MUTYH, DNA pol lambda, proliferating cell nuclear antigen (PCNA), flap endonuclease 1 (FEN1) and DNA ligases I and III from human cell extracts to A:8-oxo-G DNA, but not to undamaged DNA. (PMID:19820168)
- DNA polymerase lambda uses a novel sugar selection mechanism to discriminate against ribonucleotides, whereby the ribose 2’-hydroxyl group was excluded mostly by a backbone segment and slightly by the side chain of Y505. (PMID:19900463)
- Both Pol lambda- and (Pol kappa)-positive staining were associated with shorter survival in glioma patients. (PMID:20164241)
- analysis of the interaction between DNA Polymerase lambda and anticancer nucleoside analogs (PMID:20348107)
- DNA polymerase lambda can bypass a thymine glycol lesion on the template strand of gapped DNA substrates. (PMID:20423048)
- The results demonstrate that loop 1 is not essential for catalytic activity, but it is important for the fidelity of DNA synthesis and the accuracy of non-homologous end joining. (PMID:20435673)
- study found expression of PollambdaR438W sensitizes cells to camptothecin by affecting the homologous recombination pathway, whereas overexpression of pollambdaWT did not impact cell survival; this effect depends entirely on its DNA polymerase activity (PMID:20693240)
- both pol lambda and pol beta interact with the upstream DNA glycosylases for repair of alkylated and oxidized DNA bases (PMID:20805875)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | poll | ENSDARG00000039613 |
| mus_musculus | Poll | ENSMUSG00000025218 |
| rattus_norvegicus | Poll | ENSRNOG00000016748 |
Paralogs (3): POLB (ENSG00000070501), DNTT (ENSG00000107447), POLM (ENSG00000122678)
Protein
Protein identifiers
DNA polymerase lambda — Q9UGP5 (reviewed: Q9UGP5)
Alternative names: DNA polymerase beta-2, DNA polymerase kappa
All UniProt accessions (11): A8K860, Q9UGP5, Q5JQN9, Q5JQP0, Q5JQP1, Q5JQP2, Q5JQP3, Q5JQP4, Q5JQP7, Q5JQP8, Q9HBN3
UniProt curated annotations — full annotation on UniProt →
Function. DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template-independent (terminal transferase) DNA polymerase activities. Also has a 5’-deoxyribose-5-phosphate lyase (dRP lyase) activity.
Subunit / interactions. Interacts with PCNA. Interacts with PAXX; promoting POLL recruitment to double-strand breaks (DSBs) and stimulation of the end-filling activity of POLL. Interacts with XRCC4; promoting POLL recruitment to double-strand breaks (DSBs) and stimulation of the end-filling activity of POLL. Interacts with NHEJ1/XLF; promoting POLL recruitment to double-strand breaks (DSBs) and stimulation of the end-filling activity of POLL.
Subcellular location. Nucleus. Chromosome.
Tissue specificity. Expressed in a number of tissues. Abundant in testis.
Similarity. Belongs to the DNA polymerase type-X family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UGP5-1 | 1 | yes |
| Q9UGP5-2 | 2 |
RefSeq proteins (4): NP_001167555, NP_001167556, NP_001295311, NP_037406 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001357 | BRCT_dom | Domain |
| IPR002008 | DNA_pol_X_beta-like | Family |
| IPR002054 | DNA-dir_DNA_pol_X | Domain |
| IPR010996 | HHH_MUS81 | Domain |
| IPR018944 | DNA_pol_lambd_fingers_domain | Domain |
| IPR019843 | DNA_pol-X_BS | Binding_site |
| IPR022312 | DNA_pol_X | Family |
| IPR027421 | DNA_pol_lamdba_lyase_dom_sf | Homologous_superfamily |
| IPR028207 | DNA_pol_B_palm_palm | Domain |
| IPR029398 | PolB_thumb | Domain |
| IPR036420 | BRCT_dom_sf | Homologous_superfamily |
| IPR037160 | DNA_Pol_thumb_sf | Homologous_superfamily |
| IPR043519 | NT_sf | Homologous_superfamily |
Pfam: PF10391, PF14716, PF14791, PF14792
Enzyme classification (BRENDA):
- EC 4.2.99.B1 — (BRENDA: organisms, substrates, inhibitors, Km, kcat entries)
Catalyzed reactions (Rhea), 1 shown:
- DNA(n) + a 2’-deoxyribonucleoside 5’-triphosphate = DNA(n+1) + diphosphate (RHEA:22508)
UniProt features (74 total): helix 26, strand 18, binding site 7, region of interest 5, mutagenesis site 5, splice variant 2, sequence variant 2, sequence conflict 2, turn 2, compositionally biased region 2, chain 1, domain 1, active site 1
Structure
Experimental structures (PDB)
96 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7M07 | X-RAY DIFFRACTION | 1.57 |
| 7M49 | X-RAY DIFFRACTION | 1.6 |
| 9NPU | X-RAY DIFFRACTION | 1.63 |
| 7M47 | X-RAY DIFFRACTION | 1.65 |
| 2BCQ | X-RAY DIFFRACTION | 1.65 |
| 7M09 | X-RAY DIFFRACTION | 1.65 |
| 7M4B | X-RAY DIFFRACTION | 1.66 |
| 7M08 | X-RAY DIFFRACTION | 1.7 |
| 7M4L | X-RAY DIFFRACTION | 1.7 |
| 7M4K | X-RAY DIFFRACTION | 1.72 |
| 5IIJ | X-RAY DIFFRACTION | 1.72 |
| 2BCR | X-RAY DIFFRACTION | 1.75 |
| 5III | X-RAY DIFFRACTION | 1.8 |
| 7M0D | X-RAY DIFFRACTION | 1.8 |
| 7M4D | X-RAY DIFFRACTION | 1.82 |
| 7M0A | X-RAY DIFFRACTION | 1.83 |
| 7M4A | X-RAY DIFFRACTION | 1.87 |
| 7M4G | X-RAY DIFFRACTION | 1.88 |
| 7M45 | X-RAY DIFFRACTION | 1.89 |
| 2PFN | X-RAY DIFFRACTION | 1.9 |
| 4XA5 | X-RAY DIFFRACTION | 1.9 |
| 8U0P | X-RAY DIFFRACTION | 1.9 |
| 7M44 | X-RAY DIFFRACTION | 1.9 |
| 7M4E | X-RAY DIFFRACTION | 1.9 |
| 7M46 | X-RAY DIFFRACTION | 1.92 |
| 7M4H | X-RAY DIFFRACTION | 1.92 |
| 7M48 | X-RAY DIFFRACTION | 1.93 |
| 5IIM | X-RAY DIFFRACTION | 1.94 |
| 7M4F | X-RAY DIFFRACTION | 1.95 |
| 1XSN | X-RAY DIFFRACTION | 1.95 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UGP5-F1 | 80.90 | 0.59 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 312 (schiff-base intermediate with dna)
Ligand- & substrate-binding residues (7): 386; 417–420; 426–429; 427; 429; 490; 513
Mutagenesis-validated functional residues (5):
| Position | Phenotype |
|---|---|
| 312 | reduces drp lyase activity by over 90%. |
| 427 | loss of polymerase activity; when associated with a-429. |
| 429 | loss of polymerase activity; when associated with a-427. |
| 505 | no effect on polymerase activity. reduces terminal transferase activities. |
| 506 | strongly reduces polymerase and terminal transferase activities. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-5693571 | Nonhomologous End-Joining (NHEJ) |
MSigDB gene sets: 123 (showing top):
KAUFFMANN_DNA_REPAIR_GENES, CAGCTG_AP4_Q5, IRF7_01, GOBP_NUCLEOTIDE_EXCISION_REPAIR, GOMF_DNA_POLYMERASE_ACTIVITY, GOBP_IMMUNOGLOBULIN_PRODUCTION, GOBP_DNA_DAMAGE_RESPONSE, GOBP_SOMATIC_DIVERSIFICATION_OF_IMMUNE_RECEPTORS, GOBP_DNA_BIOSYNTHETIC_PROCESS, RFX1_02, GOBP_SOMATIC_DIVERSIFICATION_OF_IMMUNE_RECEPTORS_VIA_SOMATIC_MUTATION, REACTOME_DNA_REPAIR, GOBP_RECOMBINATIONAL_REPAIR, GOBP_DNA_REPLICATION, CETS1P54_01
GO Biological Process (10): double-strand break repair via homologous recombination (GO:0000724), DNA replication (GO:0006260), base-excision repair, gap-filling (GO:0006287), nucleotide-excision repair (GO:0006289), double-strand break repair via nonhomologous end joining (GO:0006303), somatic hypermutation of immunoglobulin genes (GO:0016446), DNA biosynthetic process (GO:0071897), DNA metabolic process (GO:0006259), DNA repair (GO:0006281), DNA damage response (GO:0006974)
GO Molecular Function (9): DNA binding (GO:0003677), DNA-directed DNA polymerase activity (GO:0003887), metal ion binding (GO:0046872), 5’-deoxyribose-5-phosphate lyase activity (GO:0051575), protein binding (GO:0005515), transferase activity (GO:0016740), nucleotidyltransferase activity (GO:0016779), lyase activity (GO:0016829), DNA polymerase activity (GO:0034061)
GO Cellular Component (4): nucleus (GO:0005634), nucleoplasm (GO:0005654), site of double-strand break (GO:0035861), chromosome (GO:0005694)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| DNA Double-Strand Break Repair | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| DNA metabolic process | 4 |
| double-strand break repair | 2 |
| DNA biosynthetic process | 2 |
| catalytic activity, acting on DNA | 2 |
| catalytic activity | 2 |
| recombinational repair | 1 |
| base-excision repair | 1 |
| DNA repair | 1 |
| somatic diversification of immune receptors via somatic mutation | 1 |
| somatic diversification of immunoglobulins | 1 |
| nucleic acid biosynthetic process | 1 |
| nucleic acid metabolic process | 1 |
| DNA damage response | 1 |
| cellular response to stress | 1 |
| nucleic acid binding | 1 |
| DNA polymerase activity | 1 |
| cation binding | 1 |
| carbon-oxygen lyase activity | 1 |
| binding | 1 |
| transferase activity, transferring phosphorus-containing groups | 1 |
| nucleotidyltransferase activity | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| cellular anatomical structure | 1 |
| site of DNA damage | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
1174 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| POLL | REV1 | Q9UBZ9 | 961 |
| POLL | TENT4A | Q5XG87 | 957 |
| POLL | RAD18 | Q9NS91 | 916 |
| POLL | XRCC4 | Q13426 | 899 |
| POLL | REV3L | O60673 | 879 |
| POLL | FBXW4 | P57775 | 874 |
| POLL | LIG1 | P18858 | 839 |
| POLL | LBX1 | P52954 | 814 |
| POLL | XRCC6 | P12956 | 805 |
| POLL | SMUG1 | Q53HV7 | 792 |
| POLL | LIG4 | P49917 | 791 |
| POLL | XRCC5 | P13010 | 784 |
| POLL | POLH | Q9Y253 | 772 |
| POLL | POLI | Q9UNA4 | 769 |
| POLL | WRN | Q14191 | 764 |
IntAct
23 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| POLL | LDOC1 | psi-mi:“MI:0915”(physical association) | 0.550 |
| LDOC1 | POLL | psi-mi:“MI:0915”(physical association) | 0.550 |
| POLL | BCKDHA | psi-mi:“MI:0914”(association) | 0.510 |
| MUTYH | POLL | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| POLL | H2BC13 | psi-mi:“MI:0915”(physical association) | 0.400 |
| POLL | H2BC21 | psi-mi:“MI:0915”(physical association) | 0.400 |
| POLL | UBC | psi-mi:“MI:0915”(physical association) | 0.400 |
| XRCC1 | POLL | psi-mi:“MI:0915”(physical association) | 0.400 |
| POLL | FAM9B | psi-mi:“MI:0915”(physical association) | 0.370 |
| POLL | TFIP11 | psi-mi:“MI:0915”(physical association) | 0.370 |
| DCUN1D1 | RGSL1 | psi-mi:“MI:0914”(association) | 0.350 |
| POLL | SULT1C2 | psi-mi:“MI:0914”(association) | 0.350 |
| INKA2 | CDC42BPA | psi-mi:“MI:0914”(association) | 0.350 |
| POLL | PGK2 | psi-mi:“MI:0914”(association) | 0.350 |
| POLL | RPA2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| POLL | BCKDHB | psi-mi:“MI:0915”(physical association) | 0.000 |
| POLL | RPA1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| POLL | RPA3 | psi-mi:“MI:0915”(physical association) | 0.000 |
| POLL | SSRP1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| POLL | WRN | psi-mi:“MI:0915”(physical association) | 0.000 |
| BCKDHA | POLL | psi-mi:“MI:0915”(physical association) | 0.000 |
| POLL | SUPT16H | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (108): POLL (Two-hybrid), POLL (Two-hybrid), POLL (Two-hybrid), POLL (Two-hybrid), POLL (Two-hybrid), SSX2IP (Two-hybrid), FSD2 (Two-hybrid), KRT40 (Two-hybrid), FAM9B (Two-hybrid), KRTAP10-7 (Two-hybrid), KRTAP10-3 (Two-hybrid), C9orf64 (Affinity Capture-MS), SCGB1D1 (Affinity Capture-MS), SEMG2 (Affinity Capture-MS), SEMG1 (Affinity Capture-MS)
ESM2 similar proteins: A0A8C2MDK8, A7SLX5, A7YY46, D3ZEY4, D3ZX08, E9QAM5, O59713, O95822, P0C7A1, P48760, P52333, P52824, Q002B5, Q07071, Q14397, Q15477, Q2KI24, Q2M296, Q2NKY8, Q3SYT1, Q3T7C9, Q3U1Y4, Q3URQ7, Q4R380, Q52L34, Q567W6, Q568Y2, Q5I0I8, Q5NCQ5, Q5ZHX9, Q6GPQ5, Q6NZR5, Q6P5E8, Q8BUI3, Q8BX80, Q8C9A2, Q8NFF5, Q8NFI3, Q91X44, Q920F5
Diamond homologs: O57383, P06746, P06766, Q27958, Q4R380, Q5RKI3, Q67VC8, Q6DRD3, Q7T6Y4, Q8K409, Q9FNY4, Q9QXE2, Q9UGP5, P09838, Q9JIW4, Q9NP87, A4PCD4, O02789, O57486, P04053, P06526, P36195, P42118, Q92089, A8N936
SIGNOR signaling
9 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| HUWE1 | “down-regulates quantity by destabilization” | POLL | polyubiquitination |
| ATM | “up-regulates activity” | POLL | phosphorylation |
| CyclinA2/CDK2 | “up-regulates quantity by stabilization” | POLL | phosphorylation |
| PRKDC | “up-regulates activity” | POLL | phosphorylation |
| CDK2 | “up-regulates quantity by stabilization” | POLL | phosphorylation |
| CDK2 | “up-regulates activity” | POLL | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 22 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Gap-filling DNA repair synthesis and ligation in GG-NER | 5 | 115.6× | 5e-08 |
| HDR through Homologous Recombination (HRR) | 5 | 50.1× | 1e-06 |
| Gap-filling DNA repair synthesis and ligation in TC-NER | 5 | 47.0× | 2e-06 |
| Regulation of TP53 Activity through Phosphorylation | 7 | 43.4× | 3e-08 |
| Processing of DNA double-strand break ends | 7 | 42.1× | 3e-08 |
| G2/M DNA damage checkpoint | 6 | 38.0× | 6e-07 |
| Meiotic recombination | 5 | 34.1× | 6e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mismatch repair | 5 | 162.0× | 5e-09 |
| base-excision repair | 6 | 140.4× | 2e-10 |
| DNA replication | 6 | 49.6× | 5e-08 |
| DNA repair | 5 | 16.0× | 1e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
118 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 83 |
| Likely benign | 11 |
| Benign | 12 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 815374 | GRCh37/hg19 10q24.31-24.32(chr10:102925257-103401586)x3 | Pathogenic |
SpliceAI
1479 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:101582761:A:AC | donor_gain | 1.0000 |
| 10:101582762:C:CC | donor_gain | 1.0000 |
| 10:101582762:CTGT:C | donor_gain | 1.0000 |
| 10:101582789:C:A | donor_gain | 1.0000 |
| 10:101582803:T:A | donor_gain | 1.0000 |
| 10:101582891:CCT:C | acceptor_loss | 1.0000 |
| 10:101582892:C:G | acceptor_loss | 1.0000 |
| 10:101582893:T:G | acceptor_loss | 1.0000 |
| 10:101583522:T:C | donor_gain | 1.0000 |
| 10:101583546:C:A | donor_gain | 1.0000 |
| 10:101583586:A:AC | donor_gain | 1.0000 |
| 10:101583587:C:CC | donor_gain | 1.0000 |
| 10:101584920:C:CC | acceptor_gain | 1.0000 |
| 10:101584921:T:C | acceptor_gain | 1.0000 |
| 10:101584921:T:TC | acceptor_gain | 1.0000 |
| 10:101585864:A:AC | donor_gain | 1.0000 |
| 10:101585865:C:CC | donor_gain | 1.0000 |
| 10:101586153:CACT:C | acceptor_gain | 1.0000 |
| 10:101580250:T:TA | donor_gain | 0.9900 |
| 10:101580412:TGGAC:T | acceptor_gain | 0.9900 |
| 10:101580414:GAC:G | acceptor_gain | 0.9900 |
| 10:101580415:AC:A | acceptor_gain | 0.9900 |
| 10:101580416:CC:C | acceptor_gain | 0.9900 |
| 10:101580417:C:CC | acceptor_gain | 0.9900 |
| 10:101582619:A:C | donor_gain | 0.9900 |
| 10:101582740:A:AC | donor_gain | 0.9900 |
| 10:101582741:C:CC | donor_gain | 0.9900 |
| 10:101582741:CTG:C | donor_gain | 0.9900 |
| 10:101582741:CTGCT:C | donor_gain | 0.9900 |
| 10:101582761:ACTGT:A | donor_gain | 0.9900 |
AlphaMissense
3734 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:101584636:A:G | L286P | 0.997 |
| 10:101583527:G:T | A349D | 0.996 |
| 10:101579640:C:G | R514P | 0.995 |
| 10:101583519:A:G | W352R | 0.995 |
| 10:101583519:A:T | W352R | 0.995 |
| 10:101579622:G:T | A520D | 0.994 |
| 10:101579663:G:C | F506L | 0.994 |
| 10:101579663:G:T | F506L | 0.994 |
| 10:101579665:A:G | F506L | 0.994 |
| 10:101584636:A:T | L286H | 0.994 |
| 10:101584615:A:T | V293D | 0.993 |
| 10:101584668:C:A | R275S | 0.993 |
| 10:101584668:C:G | R275S | 0.993 |
| 10:101580415:A:T | V399D | 0.992 |
| 10:101584714:A:G | L260P | 0.992 |
| 10:101579463:C:G | R573P | 0.991 |
| 10:101579638:A:G | S515P | 0.991 |
| 10:101579719:G:T | R488S | 0.991 |
| 10:101579721:C:G | R487P | 0.991 |
| 10:101580352:C:G | R420P | 0.991 |
| 10:101584669:C:G | R275T | 0.991 |
| 10:101585932:A:G | W114R | 0.991 |
| 10:101585932:A:T | W114R | 0.991 |
| 10:101580324:G:C | D429E | 0.990 |
| 10:101580324:G:T | D429E | 0.990 |
| 10:101579631:C:G | R517P | 0.989 |
| 10:101583528:C:G | A349P | 0.989 |
| 10:101580319:A:T | L431H | 0.988 |
| 10:101584734:G:C | N253K | 0.988 |
| 10:101584734:G:T | N253K | 0.988 |
dbSNP variants (sampled 300 via entrez): RS1000354698 (10:101586782 A>C), RS1000400356 (10:101580204 T>C), RS1000599171 (10:101585794 A>C,T), RS1000630474 (10:101586108 C>T), RS1001012227 (10:101587069 T>C), RS1001187033 (10:101587593 G>T), RS1001607457 (10:101584208 G>A), RS1001638682 (10:101584540 C>T), RS1002722260 (10:101588830 T>C), RS1002752023 (10:101589083 G>A), RS1003005143 (10:101583826 G>A,T), RS1003020413 (10:101582337 C>T), RS1003343671 (10:101582108 C>T), RS1003617617 (10:101580709 G>A), RS1003627014 (10:101581818 T>C,G)
Disease associations
OMIM: gene MIM:606343 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5367 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
2 measured of 29 human assays (29 total across all organisms); most potent 2 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| CHEMBL3898463 | IC50 | 6900 nM |
| CHEMBL3926514 | IC50 | 7400 nM |
ChEMBL bioactivities
11 potent at pChembl≥5 of 15 total, top 11 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.30 | IC50 | 5000 | nM | CHEMBL3978947 |
| 5.28 | IC50 | 5200 | nM | OBLONGIFOLIN C |
| 5.27 | IC50 | 5400 | nM | GUTTIFERONE K |
| 5.25 | IC50 | 5600 | nM | CHEMBL3889506 |
| 5.24 | IC50 | 5800 | nM | CHEMBL3917534 |
| 5.24 | IC50 | 5700 | nM | CHEMBL3976184 |
| 5.21 | IC50 | 6200 | nM | CHEMBL3907489 |
| 5.16 | IC50 | 6900 | nM | CHEMBL3898463 |
| 5.16 | IC50 | 7000 | nM | CHEMBL1917196 |
| 5.13 | IC50 | 7400 | nM | CHEMBL3926514 |
| 5.06 | IC50 | 8800 | nM | CHEMBL3935433 |
PubChem BioAssay actives
35 with measured affinity, of 211 total; 35 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (5Z)-5-[[4-(2-methylphenyl)sulfanyl-3-nitrophenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 3.9000 | uM |
| (5Z)-5-[[3-bromo-4-(3-fluoro-4-methylphenyl)sulfanylphenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 4.0000 | uM |
| (5Z)-5-[[2,4-bis[(4-methylphenyl)sulfanyl]phenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 4.0000 | uM |
| (1R,3E,5S,6S,7R)-3-[(3,4-dihydroxyphenyl)-hydroxymethylidene]-7-[(2E,6R)-6-hydroxy-3,7-dimethylocta-2,7-dienyl]-6-methyl-1,5-bis(3-methylbut-2-enyl)-6-(4-methylpent-3-enyl)bicyclo[3.3.1]nonane-2,4,9-trione | 1323393: Inhibition of recombinant human His-tagged DNA polymerase lambda assessed as reduction in [3H]dTTP incorporation using poly(dA)/oligo(dT)18 as template/primer preincubated for 10 mins followed by template/primer addition measured after 60 mins | ic50 | 5.0000 | uM |
| (1R,3E,5S,6S,7R)-3-[(3,4-dihydroxyphenyl)-hydroxymethylidene]-7-[(2E)-3,7-dimethylocta-2,6-dienyl]-6-methyl-1,5-bis(3-methylbut-2-enyl)-6-(4-methylpent-3-enyl)bicyclo[3.3.1]nonane-2,4,9-trione | 1323393: Inhibition of recombinant human His-tagged DNA polymerase lambda assessed as reduction in [3H]dTTP incorporation using poly(dA)/oligo(dT)18 as template/primer preincubated for 10 mins followed by template/primer addition measured after 60 mins | ic50 | 5.2000 | uM |
| (1R,3E,5S,6S,7R)-3-[(3,4-dihydroxyphenyl)-hydroxymethylidene]-6-methyl-1,5,7-tris(3-methylbut-2-enyl)-6-(4-methylpent-3-enyl)bicyclo[3.3.1]nonane-2,4,9-trione | 1323393: Inhibition of recombinant human His-tagged DNA polymerase lambda assessed as reduction in [3H]dTTP incorporation using poly(dA)/oligo(dT)18 as template/primer preincubated for 10 mins followed by template/primer addition measured after 60 mins | ic50 | 5.4000 | uM |
| (1R,3E,5S,6S,7R)-3-[(3,4-dihydroxyphenyl)-hydroxymethylidene]-7-[(2E,5E)-7-hydroxy-3,7-dimethylocta-2,5-dienyl]-6-methyl-1,5-bis(3-methylbut-2-enyl)-6-(4-methylpent-3-enyl)bicyclo[3.3.1]nonane-2,4,9-trione | 1323393: Inhibition of recombinant human His-tagged DNA polymerase lambda assessed as reduction in [3H]dTTP incorporation using poly(dA)/oligo(dT)18 as template/primer preincubated for 10 mins followed by template/primer addition measured after 60 mins | ic50 | 5.6000 | uM |
| (1R,3E,5S,6S,7R)-3-[hydroxy-(3-hydroxyphenyl)methylidene]-6-methyl-1,5,7-tris(3-methylbut-2-enyl)-6-(4-methylpent-3-enyl)bicyclo[3.3.1]nonane-2,4,9-trione | 1323393: Inhibition of recombinant human His-tagged DNA polymerase lambda assessed as reduction in [3H]dTTP incorporation using poly(dA)/oligo(dT)18 as template/primer preincubated for 10 mins followed by template/primer addition measured after 60 mins | ic50 | 5.7000 | uM |
| (5Z)-5-[[3-chloro-4-(4-methylphenyl)sulfanylphenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 5.7000 | uM |
| (1R,3E,5S,6S,7R)-3-[(3,4-dihydroxyphenyl)-hydroxymethylidene]-7-[(2E,6S)-6-hydroxy-3,7-dimethylocta-2,7-dienyl]-6-methyl-1,5-bis(3-methylbut-2-enyl)-6-(4-methylpent-3-enyl)bicyclo[3.3.1]nonane-2,4,9-trione | 1323393: Inhibition of recombinant human His-tagged DNA polymerase lambda assessed as reduction in [3H]dTTP incorporation using poly(dA)/oligo(dT)18 as template/primer preincubated for 10 mins followed by template/primer addition measured after 60 mins | ic50 | 5.8000 | uM |
| (5Z)-5-[[4-(4-methylphenyl)sulfanyl-3-nitrophenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 5.9000 | uM |
| (5Z)-5-[[4-(3-methylphenyl)sulfanyl-3-nitrophenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 6.0000 | uM |
| (6E)-6-[(3,4-dihydroxyphenyl)-hydroxymethylidene]-8-[(2E)-3,7-dimethylocta-2,6-dienyl]-2,2-dimethyl-8-(3-methylbut-2-enyl)chromene-5,7-dione | 1323393: Inhibition of recombinant human His-tagged DNA polymerase lambda assessed as reduction in [3H]dTTP incorporation using poly(dA)/oligo(dT)18 as template/primer preincubated for 10 mins followed by template/primer addition measured after 60 mins | ic50 | 6.2000 | uM |
| (1R,3Z,6R,9S,10R,13R)-3-[(3,4-dihydroxyphenyl)-hydroxymethylidene]-13-[(2E)-3,7-dimethylocta-2,6-dienyl]-6-(2-hydroxypropan-2-yl)-9-methyl-1,10-bis(3-methylbut-2-enyl)-5-oxatricyclo[7.2.2.04,10]tridecane-2,11-dione | 1323393: Inhibition of recombinant human His-tagged DNA polymerase lambda assessed as reduction in [3H]dTTP incorporation using poly(dA)/oligo(dT)18 as template/primer preincubated for 10 mins followed by template/primer addition measured after 60 mins | ic50 | 6.9000 | uM |
| (5,8-dioxonaphthalen-1-yl) dodecanoate | 627886: Inhibition of His-tagged human DNA polymerase lambda using poly(dA)/oligo(dT)18 (A/T = 2/1) and dTTP as the DNA template-primer and nucleotide substrate after 60 mins | ic50 | 7.0000 | uM |
| (1R,3Z,6R,9S,10R,13R)-3-[(3,4-dihydroxyphenyl)-hydroxymethylidene]-6-(2-hydroxypropan-2-yl)-9-methyl-1,10,13-tris(3-methylbut-2-enyl)-5-oxatricyclo[7.2.2.04,10]tridecane-2,11-dione | 1323393: Inhibition of recombinant human His-tagged DNA polymerase lambda assessed as reduction in [3H]dTTP incorporation using poly(dA)/oligo(dT)18 as template/primer preincubated for 10 mins followed by template/primer addition measured after 60 mins | ic50 | 7.4000 | uM |
| (1R,3E,5S,6S,7S)-3-[(3,4-dihydroxyphenyl)-hydroxymethylidene]-7-(2-hydroxy-3-methylbut-3-enyl)-6-methyl-1,5-bis(3-methylbut-2-enyl)-6-(4-methylpent-3-enyl)bicyclo[3.3.1]nonane-2,4,9-trione | 1323393: Inhibition of recombinant human His-tagged DNA polymerase lambda assessed as reduction in [3H]dTTP incorporation using poly(dA)/oligo(dT)18 as template/primer preincubated for 10 mins followed by template/primer addition measured after 60 mins | ic50 | 8.8000 | uM |
| (5Z)-5-[[4-(4-methylphenyl)sulfanyl-3-nitrophenyl]methylidene]-1,3-thiazolidine-2,4-dione | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[(4-cyclohexylsulfanyl-3-nitrophenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[4-(4-methylphenyl)sulfanylphenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[3-fluoro-4-(4-methylphenyl)sulfanylphenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[3-bromo-4-(4-methylphenyl)sulfanylphenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[4-(4-methylphenyl)sulfanyl-3-(trifluoromethyl)phenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| 2-(4-methylphenyl)sulfanyl-5-[(Z)-(4-oxo-2-sulfanylidene-1,3-thiazolidin-5-ylidene)methyl]benzonitrile | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[4-(4-ethylphenyl)sulfanyl-3-nitrophenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[3-nitro-4-[4-(trifluoromethyl)phenyl]sulfanylphenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[4-(3-fluoro-4-methylphenyl)sulfanyl-3-nitrophenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[3-nitro-4-[2,3,5,6-tetrafluoro-4-(trifluoromethyl)phenyl]sulfanylphenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[4-(3,5-dimethylphenyl)sulfanyl-3-nitrophenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[(4-naphthalen-2-ylsulfanyl-3-nitrophenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[4-(2-methylphenyl)sulfanylphenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[3-fluoro-4-(2-methylphenyl)sulfanylphenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[4-(2-methylphenyl)sulfanyl-3-(trifluoromethyl)phenyl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| (5Z)-5-[[4-bromo-5-(4-methylphenyl)sulfanylthiophen-2-yl]methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
| 4-hydroxy-5-[1-[4-(4-methylphenyl)sulfanyl-3-nitrophenyl]ethenyl]-3H-1,3-thiazole-2-thione | 1800107: DNA Pol λ PEX Assay from Article 10.1021/cb4007562: “Expanding the Scope of Human DNA Polymerase ¿ and ß Inhibitors.” | ic50 | 10.0000 | uM |
CTD chemical–gene interactions
27 total (human), top 27 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | increases expression, increases methylation | 2 |
| Estradiol | decreases expression | 2 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| honokiol | decreases activity | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| benzo(a)pyrene diolepoxide I | increases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| abrine | increases expression | 1 |
| Decitabine | decreases expression, decreases reaction | 1 |
| Glyphosate | increases expression | 1 |
| Acrolein | increases oxidation, increases abundance, affects cotreatment | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation | 1 |
| Amiodarone | increases expression | 1 |
| Caffeine | increases phosphorylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Ozone | affects cotreatment, increases oxidation, increases abundance | 1 |
| Phthalic Acids | decreases methylation | 1 |
| Selenium | increases expression, affects cotreatment | 1 |
| Selenomethionine | affects expression | 1 |
| Smoke | decreases expression | 1 |
| Thiram | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Vitamin E | increases expression, affects cotreatment | 1 |
| Aflatoxin B1 | decreases expression, increases methylation, decreases reaction | 1 |
| Okadaic Acid | decreases expression | 1 |
| Acrylamide | decreases expression | 1 |
| Volatile Organic Compounds | affects cotreatment, increases oxidation | 1 |
ChEMBL screening assays
21 unique, capped per target: 21 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1023129 | Binding | Inhibition of human DNA polymerase lambda at 100 uM | Penicilliols A and B, novel inhibitors specific to mammalian Y-family DNA polymerases. — Bioorg Med Chem |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2BG | Abcam HeLa POLL KO | Cancer cell line | Female |
| CVCL_TF03 | HAP1 POLL (-) 1 | Cancer cell line | Male |
| CVCL_TF04 | HAP1 POLL (-) 2 | Cancer cell line | Male |
| CVCL_TF05 | HAP1 POLL (-) 3 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.