POMT1
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Also known as LGMD2K
Summary
POMT1 (protein O-mannosyltransferase 1, HGNC:9202) is a protein-coding gene on chromosome 9q34.13, encoding Protein O-mannosyl-transferase 1 (Q9Y6A1). Transfers mannosyl residues to the hydroxyl group of serine or threonine residues.
The protein encoded by this gene is an O-mannosyltransferase that requires interaction with the product of the POMT2 gene for enzymatic function. The encoded protein is found in the membrane of the endoplasmic reticulum. Defects in this gene are a cause of Walker-Warburg syndrome (WWS) and limb-girdle muscular dystrophy type 2K (LGMD2K). Several transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 10585 — RefSeq curated summary.
At a glance
- Gene–disease (curated): myopathy caused by variation in POMT1 (Definitive, ClinGen) — +8 more curated relationships
- Clinical variants (ClinVar): 1,307 total — 94 pathogenic, 68 likely-pathogenic
- Phenotypes (HPO): 201
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_001077365
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9202 |
| Approved symbol | POMT1 |
| Name | protein O-mannosyltransferase 1 |
| Location | 9q34.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LGMD2K |
| Ensembl gene | ENSG00000130714 |
| Ensembl biotype | protein_coding |
| OMIM | 607423 |
| Entrez | 10585 |
Gene structure
Transcript identifiers
Ensembl transcripts: 82 — 29 protein_coding, 23 nonsense_mediated_decay, 17 retained_intron, 13 protein_coding_CDS_not_defined
ENST00000341012, ENST00000372220, ENST00000372228, ENST00000402686, ENST00000404875, ENST00000415075, ENST00000418774, ENST00000423007, ENST00000430619, ENST00000441334, ENST00000448212, ENST00000462375, ENST00000467848, ENST00000483472, ENST00000485278, ENST00000494883, ENST00000676640, ENST00000676803, ENST00000676835, ENST00000676915, ENST00000677028, ENST00000677029, ENST00000677099, ENST00000677167, ENST00000677216, ENST00000677221, ENST00000677293, ENST00000677295, ENST00000677444, ENST00000677586, ENST00000677626, ENST00000677677, ENST00000677729, ENST00000677853, ENST00000677944, ENST00000677983, ENST00000678202, ENST00000678264, ENST00000678303, ENST00000678366, ENST00000678546, ENST00000678548, ENST00000678626, ENST00000678693, ENST00000678707, ENST00000678733, ENST00000678739, ENST00000678768, ENST00000678785, ENST00000678795, ENST00000678833, ENST00000678942, ENST00000679023, ENST00000679073, ENST00000679076, ENST00000679111, ENST00000679189, ENST00000679221, ENST00000682070, ENST00000682535, ENST00000682539, ENST00000682563, ENST00000682639, ENST00000682813, ENST00000683110, ENST00000683134, ENST00000683229, ENST00000683231, ENST00000683392, ENST00000683615, ENST00000683712, ENST00000683855, ENST00000683900, ENST00000684062, ENST00000684399, ENST00000684579, ENST00000684679, ENST00000851501, ENST00000851502, ENST00000929070, ENST00000955371, ENST00000955372
RefSeq mRNA: 20 — MANE Select: NM_001077365
NM_001077365, NM_001077366, NM_001136113, NM_001136114, NM_001353193, NM_001353194, NM_001353195, NM_001353196, NM_001353197, NM_001353198, NM_001353199, NM_001353200, NM_001374689, NM_001374690, NM_001374691, NM_001374692, NM_001374693, NM_001374695, NM_001411024, NM_007171
CCDS: CCDS43894, CCDS43895, CCDS48045, CCDS6943, CCDS94516, CCDS94517, CCDS94518, CCDS94519
Canonical transcript exons
ENST00000402686 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001288801 | 131511337 | 131511467 |
| ENSE00001426744 | 131509903 | 131509996 |
| ENSE00003462524 | 131520080 | 131520193 |
| ENSE00003495016 | 131522047 | 131522224 |
| ENSE00003537606 | 131519389 | 131519486 |
| ENSE00003561171 | 131509743 | 131509808 |
| ENSE00003572441 | 131518837 | 131518957 |
| ENSE00003579097 | 131515426 | 131515522 |
| ENSE00003587664 | 131506114 | 131506220 |
| ENSE00003609899 | 131508911 | 131509022 |
| ENSE00003633717 | 131506403 | 131506453 |
| ENSE00003638300 | 131512041 | 131512136 |
| ENSE00003651914 | 131518445 | 131518537 |
| ENSE00003667689 | 131521346 | 131521472 |
| ENSE00003786588 | 131507368 | 131507514 |
| ENSE00003787003 | 131513239 | 131513331 |
| ENSE00003788278 | 131510260 | 131510415 |
| ENSE00003899798 | 131502918 | 131503073 |
| ENSE00003903630 | 131522932 | 131523799 |
| ENSE00003906328 | 131504189 | 131504340 |
Expression profiles
Bgee: expression breadth ubiquitous, 264 present calls, max score 97.12.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 17.4737 / max 151.9426, expressed in 1801 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 99109 | 17.4737 | 1801 |
Top tissues by expression
283 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right hemisphere of cerebellum | UBERON:0014890 | 97.12 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 96.90 | gold quality |
| cerebellar cortex | UBERON:0002129 | 96.67 | gold quality |
| left testis | UBERON:0004533 | 96.61 | gold quality |
| right testis | UBERON:0004534 | 96.46 | gold quality |
| cerebellum | UBERON:0002037 | 94.64 | gold quality |
| right uterine tube | UBERON:0001302 | 94.05 | gold quality |
| testis | UBERON:0000473 | 93.89 | gold quality |
| mucosa of stomach | UBERON:0001199 | 93.79 | gold quality |
| right frontal lobe | UBERON:0002810 | 93.78 | gold quality |
| adenohypophysis | UBERON:0002196 | 93.75 | gold quality |
| cortical plate | UBERON:0005343 | 93.69 | gold quality |
| apex of heart | UBERON:0002098 | 93.14 | gold quality |
| sural nerve | UBERON:0015488 | 93.01 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 93.01 | gold quality |
| lower esophagus | UBERON:0013473 | 92.98 | gold quality |
| right ovary | UBERON:0002118 | 92.62 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 92.58 | gold quality |
| left ovary | UBERON:0002119 | 92.51 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 92.38 | gold quality |
| metanephros cortex | UBERON:0010533 | 92.24 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 92.14 | gold quality |
| cingulate cortex | UBERON:0003027 | 92.07 | gold quality |
| gastrocnemius | UBERON:0001388 | 91.96 | gold quality |
| pituitary gland | UBERON:0000007 | 91.86 | gold quality |
| muscle of leg | UBERON:0001383 | 91.80 | gold quality |
| stromal cell of endometrium | CL:0002255 | 91.75 | gold quality |
| body of uterus | UBERON:0009853 | 91.62 | gold quality |
| tibial nerve | UBERON:0001323 | 91.39 | gold quality |
| ganglionic eminence | UBERON:0004023 | 91.30 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
17 targeting POMT1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6744-5P | 99.93 | 66.82 | 748 |
| HSA-MIR-609 | 99.82 | 64.26 | 505 |
| HSA-MIR-3934-3P | 99.76 | 65.51 | 1351 |
| HSA-MIR-7154-5P | 99.69 | 70.52 | 1900 |
| HSA-MIR-1206 | 99.30 | 69.32 | 1016 |
| HSA-MIR-7160-5P | 99.11 | 67.17 | 2207 |
| HSA-MIR-4711-3P | 98.97 | 66.87 | 1020 |
| HSA-MIR-218-1-3P | 98.63 | 67.97 | 832 |
| HSA-MIR-6755-3P | 98.61 | 66.90 | 834 |
| HSA-MIR-4294 | 97.86 | 65.72 | 1110 |
| HSA-MIR-146B-3P | 97.83 | 65.29 | 782 |
| HSA-MIR-6859-3P | 97.26 | 64.69 | 428 |
| HSA-MIR-3907 | 96.76 | 65.04 | 662 |
| HSA-MIR-549A-5P | 96.35 | 68.08 | 587 |
| HSA-MIR-1291 | 96.28 | 65.89 | 1224 |
| HSA-MIR-3622B-5P | 94.62 | 64.58 | 835 |
| HSA-MIR-4638-5P | 92.31 | 65.23 | 86 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 28)
- Mutations in the O-mannosyltransferase gene POMT1 give rise to the severe neuronal migration disorder Walker-Warburg syndrome (PMID:12369018)
- Extracellular matrix and nuclear abnormalities in skeletal muscle of a patient with Walker-Warburg syndrome caused by POMT1 mutation. (PMID:12757935)
- active enzyme complex of POMT1 and POMT2 suggests that the regulation of protein O-mannosylation is complex and appears to be required for normal structure and function of alpha-dystroglycan in muscle and brain (PMID:14699049)
- The authors report on a patient with Walker-Warburg syndrome and a novel POMT1 mutation. The patient expressed alpha-dystroglycan core protein, but fully glycosylated alpha-DG antibody epitopes were absent, associated with loss of laminin-binding activity (PMID:15037715)
- Results indicate that mutations in the protein O-mannosyltransferase 1 gene result in a defect of protein O-mannosylation in Walker-Warburg syndrome patients. (PMID:15522202)
- the phenotype of glycosylation disorders linked to POMT1 mutations. Furthermore, the A200P mutation is part of a conserved core haplotype, indicating an ancestral founder mutation. (PMID:15792865)
- human protein O-mannosyltransferases 1 and 2 form heterocomplexes which possess protein O-mannosyltransferase activity (PMID:16698797)
- Several mutations were found in the Protein O-Mannosyltransferase 1 and 2 (POMT1 and POMT2) genes, and one mutation was found in each of the fukutin and fukutin-related protein (FKRP) genes. (PMID:16887026)
- An inverse Alu-repeated DNA element within exon 3 is associated with Walker Warburg syndrome in French Caucasian families. (PMID:17079174)
- In conclusion, the lymphoblast-based enzymatic assay is a sensitive and useful method (i) to select patients harbouring POMGNT1, POMT1 or POMT2 mutations; (ii) to assess the pathogenicity of new or already described mutations. (PMID:17869517)
- Thirteen CMD patients showed mutations in POMT1, But normal brain MRI associated with mental retardation and microcephaly. mutations in POMT1 (six out of 13). (PMID:18513969)
- We conclude that a significant increase of POMT1 missense mutations may indicate a functional role in neoplastic conditions in individual glioneuronal and glial brain tumors. (PMID:18647264)
- A double homozygous mutation in the POMT1 gene in two unrelated Gypsy families, is reported. (PMID:19519795)
- pyramidal neurons frequently displayed abnormal (oblique, horizontal, or inverted) orientation in a 2.5-month-old infant with Walker-Warburg syndrome homozygotic for a novel POMT1 gene mutation (PMID:19639522)
- the N-glycosylation of POMT1 and POMT2 is required for maintaining the conformation as well as the activity of the POMT1-POMT2 complex. (PMID:19880378)
- the function of the gene products is only known for POMT1, POMT2, and POMGnT1, all responsible for the O-mannosylglycan biosynthesis (PMID:20816175)
- the effects of replacing Arg(64), Glu(78) and Arg(138)residues in human POMT1 and POMT2 with Ala on complex formation and enzymatic activity were studied. (PMID:21782786)
- Three patients with heterozygous POMT1 mutations showed left ventricular (LV) dilation and/or decrease in myocardial contractile force. (PMID:22549409)
- report of 2 male siblings and an unrelated female with early onset muscular dystrophy and intellectual disability with minimal structural brain anomalies and no ocular abnormalities; a novel missense mutation (c.1958C>T; p.Pro653Leu) was identified (PMID:24491487)
- Inhibition of POMT1/2 in human mesencyhmal stem cells , resulted in complete abolishment of chondrogenesis and alterations of adipogenic and osteogenic potential together with a lethal effect during myogenic induction. (PMID:26245304)
- Our results suggest that POMT activity is inversely proportional to clinical severity, and demonstrate that skin fibroblasts can be used for differential diagnosis of patients with alpha-dystroglycanopathies. We have provided clinical, histological, enzymatic and genetic evidence of POMT1 involvement in five unrelated Chinese patients. (PMID:27193224)
- results demonstrate functional and biochemical similarities between POMT1 and its orthologue from bakers’ yeast Pmt4. (PMID:27358400)
- These findings may expand phenotype and mutation spectrum of the POMT1 gene. Clinical diagnosis supplemented with molecular screening may result in more accurate diagnoses of, prognoses for, and improved genetic counselling for this disease (PMID:28157257)
- O-mannosylation of cadherins and protocadherins does not require POMT1 and/or POMT2 in contrast to alpha-dystroglycan, and moreover, the O-Man glycans on cadherins are not elongated. (PMID:28512129)
- The child was found to carry a heterozygous missense mutation c.1939G>A (p.Ala647Thr) in exon 19 of the protein-O-mannosyltransferase 1 (POMT1) gene inherited from the mother and a heterozygous frameshift mutation c.2141delG (p.Trp714Ter) in exon 20 inherited from the father. (PMID:29419866)
- In this review, we highlight the present knowledge of the identified disease-associated POMT1 gene mutations and genetic animal models related to the POMT1 gene. (PMID:30454682)
- Enhanced influenza A H1N1 T cell epitope recognition and cross-reactivity to protein-O-mannosyltransferase 1 in Pandemrix-associated narcolepsy type 1. (PMID:33863907)
- POMT1 and POMT2 gene mutations result in 2 cases of alpha-dystroglycanopathy.", trans “POMT1POMT22alpha-. (PMID:34565739)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | pomt1 | ENSDARG00000067670 |
| mus_musculus | Pomt1 | ENSMUSG00000039254 |
| rattus_norvegicus | Pomt1 | ENSRNOG00000010477 |
| drosophila_melanogaster | rt | FBGN0003292 |
Paralogs (3): POMT2 (ENSG00000009830), SDF2L1 (ENSG00000128228), SDF2 (ENSG00000132581)
Protein
Protein identifiers
Protein O-mannosyl-transferase 1 — Q9Y6A1 (reviewed: Q9Y6A1)
Alternative names: Dolichyl-phosphate-mannose–protein mannosyltransferase 1
All UniProt accessions (35): Q9Y6A1, A0A140VKE0, A0A1V1FTP4, A0A7I2V2G9, A0A7I2V2K0, A0A7I2V2T7, A0A7I2V356, A0A7I2V3H8, A0A7I2V3L5, A0A7I2V445, A0A7I2V4L4, A0A7I2V4U0, A0A7I2V4U3, A0A7I2V505, A0A7I2V524, A0A7I2V568, A0A7I2V5P7, A0A7I2V5S7, A0A7I2V5V4, A0A7I2V5W1, A0A7I2V5X3, A0A7I2YQK3, A0A804HHZ8, A0A804HI97, A0A804HIE5, A0A804HKS2, A0A804HKU5, B4DTW4, B4DWD8, Q5JSZ6, Q5JT02, Q5JT03, Q5JT04, Q5JT05, Q5JT07
UniProt curated annotations — full annotation on UniProt →
Function. Transfers mannosyl residues to the hydroxyl group of serine or threonine residues. Coexpression of both POMT1 and POMT2 is necessary for enzyme activity, expression of either POMT1 or POMT2 alone is insufficient. Essentially dedicated to O-mannosylation of alpha-DAG1 and few other proteins but not of cadherins and protocaherins.
Subunit / interactions. Interacts with POMT2.
Subcellular location. Endoplasmic reticulum membrane.
Tissue specificity. Widely expressed. Highly expressed in testis, heart and pancreas. Detected at lower levels in kidney, skeletal muscle, brain, placenta, lung and liver.
Disease relevance. Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B1 (MDDGB1) [MIM:613155] An autosomal recessive disorder characterized by congenital muscular dystrophy associated with intellectual disability and mild structural brain abnormalities. The disease is caused by variants affecting the gene represented in this entry. Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A1 (MDDGA1) [MIM:236670] An autosomal recessive disorder characterized by congenital muscular dystrophy associated with cobblestone lissencephaly and other brain anomalies, eye malformations, profound intellectual disability, and death usually in the first years of life. Included diseases are the more severe Walker-Warburg syndrome and the slightly less severe muscle-eye-brain disease. The disease is caused by variants affecting the gene represented in this entry. Muscular dystrophy-dystroglycanopathy limb-girdle C1 (MDDGC1) [MIM:609308] An autosomal recessive degenerative myopathy associated with mild intellectual disability without any obvious structural brain abnormality. An abnormal alpha-dystroglycan pattern in observed in the muscle. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Slightly activated by Mg(2+) and inhibited by both Ca(+) and Mn(2+). EDTA ha no effect on activity in vitro.
Pathway. Protein modification; protein glycosylation.
Similarity. Belongs to the glycosyltransferase 39 family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y6A1-1 | 1 | yes |
| Q9Y6A1-2 | 2 | |
| Q9Y6A1-3 | 3 | |
| Q9Y6A1-4 | 4 |
RefSeq proteins (20): NP_001070833, NP_001070834, NP_001129585, NP_001129586, NP_001340122, NP_001340123, NP_001340124, NP_001340125, NP_001340126, NP_001340127, NP_001340128, NP_001340129, NP_001361618, NP_001361619, NP_001361620, NP_001361621, NP_001361622, NP_001361624, NP_001397953, NP_009102 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003342 | ArnT-like_N | Domain |
| IPR016093 | MIR_motif | Domain |
| IPR027005 | PMT-like | Family |
| IPR032421 | PMT_4TMC | Domain |
| IPR036300 | MIR_dom_sf | Homologous_superfamily |
Pfam: PF02366, PF02815, PF16192
Enzyme classification (BRENDA):
- EC 2.4.1.109 — dolichyl-phosphate-mannose-protein mannosyltransferase (BRENDA: 24 organisms, 130 substrates, 16 inhibitors, 22 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
13 substrates with measured Km, best-characterized 13. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| SYNTHETIC PEPTIDE BASED ON A MUCIN-LIKE DOMAIN I | 0.63–9.7 | 5 |
| AC-TYR-ALA-THR-ALA-VAL-NH2 | 0.25–15 | 3 |
| RSPSPSTQ | 10–20 | 2 |
| TYR-ASN-PRO-THR-SER-VAL | 1–3.3 | 2 |
| AC-ALA-THR-ALA-NH2 | 6.7 | 1 |
| AC-TYR-ASN-PRO-THR-SER-VAL-NH2 | 4.3 | 1 |
| BIOTIN-TYR-LEU-ALA-VAL-NH2 | 0.1 | 1 |
| BIOTIN-TYR-PRO-THR-ALA-VAL-NH2 | 0.85 | 1 |
| BIOTIN-TYR-THR-ALA-VAL-NH2 | 0.075 | 1 |
| DOLICHYL PHOSPHATE D-MANNOSE | 0.4 | 1 |
| TYR-ALA-THR-ALA-VAL | 2.2 | 1 |
| TYR-LEU-THR-ALA-VAL | 2.5 | 1 |
| TYR-PRO-THR-ALA-VAL | 7.3 | 1 |
Catalyzed reactions (Rhea), 2 shown:
- a di-trans,poly-cis-dolichyl beta-D-mannosyl phosphate + L-seryl-[protein] = 3-O-(alpha-D-mannosyl)-L-seryl-[protein] + a di-trans,poly-cis-dolichyl phosphate + H(+) (RHEA:17377)
- a di-trans,poly-cis-dolichyl beta-D-mannosyl phosphate + L-threonyl-[protein] = 3-O-(alpha-D-mannosyl)-L-threonyl-[protein] + a di-trans,poly-cis-dolichyl phosphate + H(+) (RHEA:53396)
UniProt features (49 total): sequence variant 19, transmembrane region 12, sequence conflict 8, domain 3, glycosylation site 3, splice variant 3, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y6A1-F1 | 88.09 | 0.67 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (3): 435, 471, 539
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-5083629 | Defective POMT2 causes MDDGA2, MDDGB2 and MDDGC2 |
| R-HSA-5083633 | Defective POMT1 causes MDDGA1, MDDGB1 and MDDGC1 |
| R-HSA-8932504 | DAG1 core M2 glycosylations |
| R-HSA-8932505 | DAG1 core M3 glycosylations |
| R-HSA-8932506 | DAG1 core M1 glycosylations |
| R-HSA-9768727 | Regulation of CDH1 posttranslational processing and trafficking to plasma membrane |
MSigDB gene sets: 410 (showing top):
GSE45365_NK_CELL_VS_CD11B_DC_UP, GOCC_SECRETORY_GRANULE, CMYB_01, CHANDRAN_METASTASIS_DN, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, REACTOME_ADHERENS_JUNCTIONS_INTERACTIONS, GOBP_CARBOHYDRATE_DERIVATIVE_BIOSYNTHETIC_PROCESS, BOYLAN_MULTIPLE_MYELOMA_C_CLUSTER_UP, XU_GH1_AUTOCRINE_TARGETS_DN, GOBP_PROTEIN_O_LINKED_GLYCOSYLATION, GOBP_GLYCOPROTEIN_METABOLIC_PROCESS, CHANDRAN_METASTASIS_TOP50_DN, GOCC_SECRETORY_VESICLE, GOCC_TRANSFERASE_COMPLEX, GOCC_MEMBRANE_PROTEIN_COMPLEX
GO Biological Process (4): protein O-linked glycosylation (GO:0006493), extracellular matrix organization (GO:0030198), protein O-linked glycosylation via mannose (GO:0035269), obsolete protein glycosylation (GO:0006486)
GO Molecular Function (6): mannosyltransferase activity (GO:0000030), dolichyl-phosphate-mannose-protein mannosyltransferase activity (GO:0004169), metal ion binding (GO:0046872), protein binding (GO:0005515), transferase activity (GO:0016740), glycosyltransferase activity (GO:0016757)
GO Cellular Component (7): acrosomal vesicle (GO:0001669), endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), membrane (GO:0016020), sarcoplasmic reticulum (GO:0016529), dolichyl-phosphate-mannose-protein mannosyltransferase complex (GO:0031502), endomembrane system (GO:0012505)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| DAG1 glycosylations | 3 |
| Diseases associated with O-glycosylation of proteins | 2 |
| Regulation of CDH1 Expression and Function | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| glycoprotein biosynthetic process | 1 |
| extracellular structure organization | 1 |
| external encapsulating structure organization | 1 |
| protein O-linked glycosylation | 1 |
| hexosyltransferase activity | 1 |
| mannosyltransferase activity | 1 |
| protein O-linked glycosylation via mannose | 1 |
| catalytic activity, acting on a protein | 1 |
| cation binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| transferase activity | 1 |
| secretory granule | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| endoplasmic reticulum | 1 |
| sarcoplasm | 1 |
| endoplasmic reticulum membrane | 1 |
| mannosyltransferase complex | 1 |
| membrane protein complex | 1 |
| endoplasmic reticulum protein-containing complex | 1 |
| vacuole | 1 |
| plasma membrane | 1 |
Protein interactions and networks
STRING
1338 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| POMT1 | FKTN | O75072 | 986 |
| POMT1 | FKRP | Q9H9S5 | 986 |
| POMT1 | POMGNT1 | Q8WZA1 | 986 |
| POMT1 | DAG1 | Q14118 | 978 |
| POMT1 | POMT2 | Q9UKY4 | 966 |
| POMT1 | LARGE1 | O95461 | 875 |
| POMT1 | POMGNT2 | Q8NAT1 | 874 |
| POMT1 | RXYLT1 | Q9Y2B1 | 858 |
| POMT1 | B3GALNT2 | Q8NCR0 | 855 |
| POMT1 | POMK | Q9H5K3 | 847 |
| POMT1 | LAMA2 | P24043 | 809 |
| POMT1 | DPM3 | Q9P2X0 | 805 |
| POMT1 | B4GAT1 | O43505 | 802 |
| POMT1 | GMPPB | Q9Y5P6 | 796 |
| POMT1 | AGRN | O00468 | 795 |
IntAct
45 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| VWCE | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| PCDHB7 | C2CD2L | psi-mi:“MI:0914”(association) | 0.530 |
| B4GAT1 | ADCY6 | psi-mi:“MI:0914”(association) | 0.530 |
| TMPRSS12 | FZD6 | psi-mi:“MI:0914”(association) | 0.530 |
| GABRA3 | HLA-C | psi-mi:“MI:0914”(association) | 0.530 |
| POMT1 | POMT2 | psi-mi:“MI:0915”(physical association) | 0.460 |
| POMT1 | POMT2 | psi-mi:“MI:0403”(colocalization) | 0.460 |
| DENND11 | psi-mi:“MI:0914”(association) | 0.350 | |
| M | DENND11 | psi-mi:“MI:0914”(association) | 0.350 |
| CANX | HLA-A | psi-mi:“MI:0914”(association) | 0.350 |
| NSDHL | ATP2A2 | psi-mi:“MI:0914”(association) | 0.350 |
| PCDHA4 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| TTYH1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| CHRNA4 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| PCDHA8 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| CLEC12B | GXYLT2 | psi-mi:“MI:0914”(association) | 0.350 |
| ZDHHC12 | NBAS | psi-mi:“MI:0914”(association) | 0.350 |
| MPPE1 | FAM234B | psi-mi:“MI:0914”(association) | 0.350 |
| TCTN2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| CHRNB2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| PCDHB6 | KLRG2 | psi-mi:“MI:0914”(association) | 0.350 |
| ST14 | LIPT2 | psi-mi:“MI:0914”(association) | 0.350 |
| RFTN2 | RABGAP1L | psi-mi:“MI:0914”(association) | 0.350 |
| HTR3C | GET1 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC3A2 | GET1 | psi-mi:“MI:0914”(association) | 0.350 |
| HFE | PODXL | psi-mi:“MI:0914”(association) | 0.350 |
| HPN | TOR1A | psi-mi:“MI:0914”(association) | 0.350 |
| CD1E | ADAM10 | psi-mi:“MI:0914”(association) | 0.350 |
| APOC3 | EMC8 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (92): POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS), POMT1 (Affinity Capture-MS)
ESM2 similar proteins: A0A8C2M425, A1L1J9, B0BNG2, O60725, O75908, O77759, O88269, O88908, O95255, Q0P4J9, Q290J8, Q3T1L5, Q3TAE8, Q3UV71, Q499P8, Q49LS7, Q4R4E1, Q4VV71, Q5F380, Q5KR61, Q5R8F6, Q5RAH7, Q5RKL5, Q6AZ83, Q6NVG1, Q7SXZ1, Q7T310, Q7TPN3, Q7TQM4, Q86VD9, Q8AVI9, Q8BTP0, Q8C0T0, Q8C3X8, Q8CI59, Q8IUR5, Q8K2A8, Q8L638, Q8R1J1, Q8R4P9
Diamond homologs: F1Q8R9, F1QF89, O13898, O74189, P31382, P33775, P42934, P46971, P47190, P52867, Q29IL2, Q2LZ62, Q3SZ45, Q54P23, Q59X23, Q5A688, Q5ACU3, Q5ADM9, Q8BGQ4, Q8R2R1, Q93ZE8, Q99470, Q99PR0, Q9C100, Q9DCT5, Q9UKY4, Q9VTK2, Q9W5D4, Q9Y6A1, O42933, Q9ESP1, Q3T083, Q9HCN8, A0R3E8, L8F4Z2
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| POMT1 | “form complex” | POMT | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 73 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| monoatomic ion transmembrane transport | 6 | 19.5× | 3e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1307 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 94 |
| Likely pathogenic | 68 |
| Uncertain significance | 426 |
| Likely benign | 466 |
| Benign | 72 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1067618 | NM_001077365.2(POMT1):c.427+1G>A | Pathogenic |
| 1075349 | NM_001077365.2(POMT1):c.1204dup (p.His402fs) | Pathogenic |
| 1076965 | NM_001077365.2(POMT1):c.160_161insTTTTTTTTTTTTTTTNNNNNNNNNNTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCAGTACATCTCTTTTT (p.Tyr54delinsPhePhePhePhePheXaaXaaXaaXaaHisArgPheSerArgAspGlyLeuAspLeuLeuThrSerTer) | Pathogenic |
| 1120088 | NM_001077365.2(POMT1):c.1255C>T (p.Gln419Ter) | Pathogenic |
| 1192212 | NM_001077365.2(POMT1):c.1272+1G>A | Pathogenic |
| 1252077 | NM_001077365.2(POMT1):c.1175+3del | Pathogenic |
| 1323488 | NM_001077365.2(POMT1):c.1158del (p.Thr387fs) | Pathogenic |
| 1323489 | NM_001077365.2(POMT1):c.633C>G (p.Tyr211Ter) | Pathogenic |
| 1359283 | NM_001077365.2(POMT1):c.859_871del (p.Gly287fs) | Pathogenic |
| 1364191 | NM_001077365.2(POMT1):c.58dup (p.Val20fs) | Pathogenic |
| 1451349 | NM_001077365.2(POMT1):c.72del (p.Met25fs) | Pathogenic |
| 1470886 | NM_001077365.2(POMT1):c.605+1G>T | Pathogenic |
| 1516923 | NC_000009.11:g.(?134389752)(134390863_?)del | Pathogenic |
| 162594 | NM_001077365.2(POMT1):c.1478dup (p.Tyr493Ter) | Pathogenic |
| 1696829 | NM_001077365.2(POMT1):c.1417G>C (p.Gly473Arg) | Pathogenic |
| 1696831 | NM_001077365.2(POMT1):c.1093_1094insGGAGCACGGTGTGGAACGTGGG (p.Val365fs) | Pathogenic |
| 1930280 | NM_001077365.2(POMT1):c.720del (p.Leu240fs) | Pathogenic |
| 194859 | NM_001077365.2(POMT1):c.1798C>T (p.Arg600Ter) | Pathogenic |
| 1997263 | NM_001077365.2(POMT1):c.1061G>A (p.Trp354Ter) | Pathogenic |
| 1998900 | NM_001077365.2(POMT1):c.529C>T (p.Gln177Ter) | Pathogenic |
| 1998907 | NM_001077365.2(POMT1):c.2141G>A (p.Trp714Ter) | Pathogenic |
| 2020409 | NM_001077365.2(POMT1):c.145del (p.Gln49fs) | Pathogenic |
| 2062446 | NM_001077365.2(POMT1):c.2113_2119del (p.Ser705fs) | Pathogenic |
| 212739 | NM_001077365.2(POMT1):c.558G>A (p.Trp186Ter) | Pathogenic |
| 2229059 | NM_001077365.2(POMT1):c.633C>A (p.Tyr211Ter) | Pathogenic |
| 2413915 | NM_001077365.2(POMT1):c.385del (p.Ser129fs) | Pathogenic |
| 2677995 | NM_001077365.2(POMT1):c.291del (p.Ser97fs) | Pathogenic |
| 2678001 | NM_001077365.2(POMT1):c.1477_1486del (p.Tyr493fs) | Pathogenic |
| 2678012 | NM_001077365.2(POMT1):c.2142del (p.Arg713_Trp714insTer) | Pathogenic |
| 280761 | NM_001077365.2(POMT1):c.2113_2114dup (p.Pro706fs) | Pathogenic |
SpliceAI
3694 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:131503119:G:T | donor_gain | 1.0000 |
| 9:131504336:GTGGT:G | donor_gain | 1.0000 |
| 9:131504339:GT:G | donor_gain | 1.0000 |
| 9:131504341:G:GG | donor_gain | 1.0000 |
| 9:131504346:C:G | donor_gain | 1.0000 |
| 9:131506236:A:T | donor_gain | 1.0000 |
| 9:131506401:A:AG | acceptor_gain | 1.0000 |
| 9:131506401:A:AT | acceptor_loss | 1.0000 |
| 9:131506401:AG:A | acceptor_gain | 1.0000 |
| 9:131506402:G:GA | acceptor_gain | 1.0000 |
| 9:131506402:GG:G | acceptor_gain | 1.0000 |
| 9:131506402:GGTT:G | acceptor_gain | 1.0000 |
| 9:131506638:A:T | donor_gain | 1.0000 |
| 9:131508903:T:TA | acceptor_gain | 1.0000 |
| 9:131508908:CA:C | acceptor_loss | 1.0000 |
| 9:131508909:A:AG | acceptor_gain | 1.0000 |
| 9:131508909:A:AT | acceptor_loss | 1.0000 |
| 9:131508910:G:GG | acceptor_gain | 1.0000 |
| 9:131508910:GA:G | acceptor_gain | 1.0000 |
| 9:131508910:GAGA:G | acceptor_gain | 1.0000 |
| 9:131508910:GAGAA:G | acceptor_gain | 1.0000 |
| 9:131509018:CACAG:C | donor_loss | 1.0000 |
| 9:131509019:ACAGG:A | donor_loss | 1.0000 |
| 9:131509021:AGGTA:A | donor_loss | 1.0000 |
| 9:131509024:T:G | donor_loss | 1.0000 |
| 9:131510258:A:C | acceptor_loss | 1.0000 |
| 9:131510259:GGTCT:G | acceptor_gain | 1.0000 |
| 9:131510413:GAG:G | donor_gain | 1.0000 |
| 9:131510414:AGGTA:A | donor_loss | 1.0000 |
| 9:131510416:G:GG | donor_gain | 1.0000 |
AlphaMissense
4715 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:131506115:T:C | F42L | 0.998 |
| 9:131506117:T:A | F42L | 0.998 |
| 9:131506117:T:G | F42L | 0.998 |
| 9:131511388:T:C | S325P | 0.998 |
| 9:131512086:T:G | C366W | 0.998 |
| 9:131512110:C:A | N374K | 0.998 |
| 9:131512110:C:G | N374K | 0.998 |
| 9:131512114:T:A | W376R | 0.998 |
| 9:131512114:T:C | W376R | 0.998 |
| 9:131515474:C:G | C430W | 0.998 |
| 9:131515514:T:A | W444R | 0.998 |
| 9:131515514:T:C | W444R | 0.998 |
| 9:131511439:C:G | H342D | 0.997 |
| 9:131512116:G:C | W376C | 0.997 |
| 9:131512116:G:T | W376C | 0.997 |
| 9:131518478:T:A | W458R | 0.997 |
| 9:131518478:T:C | W458R | 0.997 |
| 9:131518927:T:A | W508R | 0.997 |
| 9:131518927:T:C | W508R | 0.997 |
| 9:131522139:T:C | F662L | 0.997 |
| 9:131522141:C:A | F662L | 0.997 |
| 9:131522141:C:G | F662L | 0.997 |
| 9:131511395:T:A | V327D | 0.996 |
| 9:131511437:T:A | L341H | 0.996 |
| 9:131511442:T:C | S343P | 0.996 |
| 9:131511443:C:T | S343F | 0.996 |
| 9:131515516:G:C | W444C | 0.996 |
| 9:131515516:G:T | W444C | 0.996 |
| 9:131521369:C:A | N596K | 0.996 |
| 9:131521369:C:G | N596K | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000022900 (9:131514228 G>A), RS1000035954 (9:131504799 G>C), RS1000174991 (9:131519509 TG>T), RS1000176985 (9:131510973 G>A,C), RS1000296937 (9:131516224 C>G,T), RS1000395946 (9:131521032 G>A), RS1000404385 (9:131520777 C>T), RS1001093763 (9:131502629 T>A,G), RS1001441814 (9:131506312 C>A,G), RS1001483698 (9:131505714 C>G), RS1001616712 (9:131514814 G>C,T), RS1001706684 (9:131516607 G>A), RS1001748795 (9:131516900 C>T), RS1001900403 (9:131521616 T>C,G), RS1002499531 (9:131515061 C>T)
Disease associations
OMIM: gene MIM:607423 | disease phenotypes: MIM:236670, MIM:609308, MIM:613155, MIM:253600, MIM:616094
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1 | Definitive | Autosomal recessive |
| muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1 | Strong | Autosomal recessive |
| myopathy caused by variation in POMT1 | Strong | Autosomal recessive |
| congenital muscular dystrophy with cerebellar involvement | Supportive | Autosomal recessive |
| congenital muscular dystrophy with intellectual disability | Supportive | Autosomal recessive |
| congenital muscular dystrophy without intellectual disability | Supportive | Autosomal recessive |
| muscle-eye-brain disease | Supportive | Autosomal recessive |
| autosomal recessive limb-girdle muscular dystrophy type 2K | Supportive | Autosomal recessive |
| muscular dystrophy-dystroglycanopathy, type A | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| myopathy caused by variation in POMT1 | Definitive | AR |
Mondo (19): muscular dystrophy-dystroglycanopathy, type A (MONDO:0000171), autosomal recessive limb-girdle muscular dystrophy type 2K (MONDO:0012248), muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1 (MONDO:0013159), muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1 (MONDO:0009364), autosomal recessive limb-girdle muscular dystrophy (MONDO:0015152), congenital muscular dystrophy (MONDO:0019950), pyridoxine-dependent epilepsy (MONDO:0009945), congenital nervous system disorder (MONDO:0002320), muscular dystrophy-dystroglycanopathy, type C (MONDO:0000173), cerebellar ataxia (MONDO:0000437), sensory peripheral neuropathy (MONDO:0002321), hearing loss disorder (MONDO:0005365), myopathy caused by variation in POMT1 (MONDO:0700070), limb-girdle muscular dystrophy due to POMK deficiency (MONDO:0014489), intellectual disability (MONDO:0001071)
Orphanet (9): POMT1-related limb-girdle muscular dystrophy R11 (Orphanet:86812), Walker-Warburg syndrome (Orphanet:899), Muscle-eye-brain disease (Orphanet:588), Autosomal recessive limb-girdle muscular dystrophy (Orphanet:102015), Congenital muscular dystrophy (Orphanet:97242), Pyridoxine-dependent-developmental and epileptic encephalopathy (Orphanet:3006), Rare ataxia (Orphanet:102002), Limb-girdle muscular dystrophy due to POMK deficiency (Orphanet:445110), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
201 total (30 of 201 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000050 | Hypoplastic male external genitalia |
| HP:0000054 | Micropenis |
| HP:0000110 | Renal dysplasia |
| HP:0000158 | Macroglossia |
| HP:0000175 | Cleft palate |
| HP:0000176 | Submucous cleft hard palate |
| HP:0000193 | Bifid uvula |
| HP:0000204 | Cleft upper lip |
| HP:0000238 | Hydrocephalus |
| HP:0000252 | Microcephaly |
| HP:0000256 | Macrocephaly |
| HP:0000298 | Mask-like facies |
| HP:0000340 | Sloping forehead |
| HP:0000347 | Micrognathia |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000369 | Low-set ears |
| HP:0000411 | Protruding ear |
| HP:0000413 | Atresia of the external auditory canal |
| HP:0000478 | Abnormality of the eye |
| HP:0000482 | Microcornea |
| HP:0000485 | Megalocornea |
| HP:0000486 | Strabismus |
| HP:0000501 | Glaucoma |
| HP:0000505 | Visual impairment |
| HP:0000518 | Cataract |
| HP:0000519 | Developmental cataract |
| HP:0000525 | Abnormality iris morphology |
| HP:0000528 | Anophthalmia |
GWAS associations
0 associations (top):
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002524 | Cerebellar Ataxia | C10.228.140.252.190; C10.597.350.090.500; C23.888.592.350.090.200 |
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D058494 | Walker-Warburg Syndrome | C10.500.507.450.499.249.500; C11.270.881; C16.131.666.507.450.499.249.500; C16.320.577.750 |
| C538640 | Limb-girdle muscular dystrophy autosomal recessive (supp.) | |
| C536254 | Pyridoxine-dependent epilepsy (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
22 total (human), top 22 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| methacrylaldehyde | increases oxidation, increases abundance, affects cotreatment, decreases expression | 2 |
| Acrolein | affects cotreatment, decreases expression, increases oxidation, increases abundance | 2 |
| Ozone | affects cotreatment, decreases expression, increases oxidation, increases abundance | 2 |
| alpha-pinene | affects cotreatment, decreases expression, increases oxidation, increases abundance | 1 |
| beta-lapachone | increases expression | 1 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| beta-methylcholine | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Temozolomide | increases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Air Pollutants | increases abundance, increases oxidation, affects cotreatment, decreases expression | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Dactinomycin | increases expression | 1 |
| Manganese | affects cotreatment, decreases expression, increases abundance | 1 |
| Smoke | decreases expression | 1 |
| Valproic Acid | decreases expression | 1 |
| Vanadates | decreases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
| Volatile Organic Compounds | affects cotreatment, decreases expression, increases oxidation | 1 |
Cellosaurus cell lines
5 cell lines: 4 cancer cell line, 1 finite cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E2H7 | HAP1 POMT1 (-) 3 | Cancer cell line | Male |
| CVCL_E2H8 | HAP1 POMT1 (-) 4 | Cancer cell line | Male |
| CVCL_JF24 | GM23363 | Finite cell line | Female |
| CVCL_TF20 | HAP1 POMT1 (-) 1 | Cancer cell line | Male |
| CVCL_TF21 | HAP1 POMT1 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01422200 | PHASE4 | COMPLETED | Flu Vaccine Study in Neuromuscular Patients 2011 |
| NCT00950196 | PHASE4 | COMPLETED | Amantadine for Improving Neurologic Symptoms in Ataxia-Telangiectasia |
| NCT04107740 | PHASE4 | COMPLETED | C-Trelin Orally Disintegrated(OD) Tablet 5mg in Ataxia Due to Spinocerebellar Degeneration |
| NCT00205881 | PHASE4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | PHASE4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | PHASE4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | PHASE4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | PHASE4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT01970098 | PHASE3 | COMPLETED | A Confirmatory Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01970111 | PHASE3 | COMPLETED | An Extension Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01970124 | PHASE3 | COMPLETED | A Long-Term Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01970137 | PHASE3 | COMPLETED | A 24-week Open-label Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT02889302 | PHASE3 | COMPLETED | An Additional Confirmatory Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT03408080 | PHASE3 | ACTIVE_NOT_RECRUITING | Open Pilot Trial of BHV-4157 |
| NCT03701399 | PHASE3 | ACTIVE_NOT_RECRUITING | Troriluzole in Adult Participants With Spinocerebellar Ataxia |
| NCT03901638 | PHASE3 | TERMINATED | Tllsh2910 for Ataxia and Gut Microbiota Alteration in Patients of Multiple System Atrophy |
| NCT07040137 | PHASE3 | RECRUITING | Confirmatory Study 3 of KPS-0373 in Patients With Spinocerebellar Degeneration |
| NCT01526564 | PHASE3 | COMPLETED | Clinical Study on Acetyl-L-Carnitine |
| NCT01499901 | PHASE3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | PHASE3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | PHASE3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | PHASE3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT00034242 | PHASE2 | COMPLETED | High-Dose Intravenous Immunoglobulin to Treat Cerebellar Degeneration |
| NCT00202397 | PHASE2 | COMPLETED | Effect of Riluzole as a Symptomatic Approach in Patients With Chronic Cerebellar Ataxia |
| NCT00863538 | PHASE2 | COMPLETED | Phase II Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01004016 | PHASE2 | COMPLETED | A Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01350440 | PHASE2 | COMPLETED | Safety and Efficacy of Intravenous Immune Globulin in Treating Spinocerebellar Ataxia |
| NCT02540655 | PHASE2 | COMPLETED | Efficacy and Safety Study of Stemchymal® in Polyglutamine Spinocerebellar Ataxia |
| NCT03932669 | PHASE2 | COMPLETED | Effect of Nilotinib in Cerebellar Ataxia Patients |
| NCT04301284 | PHASE2 | WITHDRAWN | Study of CAD-1883 for Spinocerebellar Ataxia |
| NCT05125666 | PHASE2 | UNKNOWN | Efficacy of Dual Task Training on Children With Ataxia After Medulloblastoma Resection |
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| NCT00013455 | PHASE2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | PHASE2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
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| NCT01451853 | PHASE2 | UNKNOWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | PHASE2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
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Related Atlas pages
- Associated diseases: muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1, muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1, congenital muscular dystrophy with intellectual disability, muscle-eye-brain disease, autosomal recessive limb-girdle muscular dystrophy type 2K, muscular dystrophy-dystroglycanopathy, type A, myopathy caused by variation in POMT1
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive limb-girdle muscular dystrophy, autosomal recessive limb-girdle muscular dystrophy type 2K, cerebellar ataxia, congenital muscular dystrophy, congenital muscular dystrophy with intellectual disability, limb-girdle muscular dystrophy due to POMK deficiency, muscle-eye-brain disease, muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1, muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B1, muscular dystrophy-dystroglycanopathy, type A, muscular dystrophy-dystroglycanopathy, type C, myopathy caused by variation in POMT1, pyridoxine-dependent epilepsy, sensory peripheral neuropathy