PPCDC
geneOn this page
Also known as MDS018FLJ14585
Summary
PPCDC (phosphopantothenoylcysteine decarboxylase, HGNC:28107) is a protein-coding gene on chromosome 15q24.2, encoding Phosphopantothenoylcysteine decarboxylase (Q96CD2). Catalyzes the decarboxylation of the cysteine moiety of 4-phosphopantothenoylcysteine to form 4’-phosphopantotheine and this reaction forms part of the biosynthesis of coenzyme A. It is a selective cancer dependency (DepMap: 15.0% of cell lines).
Biosynthesis of coenzyme A (CoA) from pantothenic acid (vitamin B5) is an essential universal pathway in prokaryotes and eukaryotes. PPCDC (EC 4.1.1.36), one of the last enzymes in this pathway, converts phosphopantothenoylcysteine to 4-prime-phosphopantetheine (Daugherty et al., 2002 [PubMed 11923312]).
Source: NCBI Gene 60490 — RefSeq curated summary.
At a glance
- Gene–disease (curated): dilated cardiomyopathy (Limited, GenCC)
- GWAS associations: 17
- Clinical variants (ClinVar): 43 total
- Cancer dependency (DepMap): dependent in 15.0% of screened cell lines
- MANE Select transcript:
NM_021823
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28107 |
| Approved symbol | PPCDC |
| Name | phosphopantothenoylcysteine decarboxylase |
| Location | 15q24.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MDS018, FLJ14585 |
| Ensembl gene | ENSG00000138621 |
| Ensembl biotype | protein_coding |
| OMIM | 609854 |
| Entrez | 60490 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 14 protein_coding, 3 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000342932, ENST00000562095, ENST00000562192, ENST00000563298, ENST00000563393, ENST00000564923, ENST00000564953, ENST00000567336, ENST00000568207, ENST00000568649, ENST00000569562, ENST00000889947, ENST00000889948, ENST00000928390, ENST00000928391, ENST00000928392, ENST00000928393, ENST00000943486
RefSeq mRNA: 6 — MANE Select: NM_021823
NM_001301101, NM_001301102, NM_001301103, NM_001301104, NM_001301105, NM_021823
CCDS: CCDS10275, CCDS73759, CCDS73760, CCDS73761, CCDS76781
Canonical transcript exons
ENST00000342932 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001381226 | 75049150 | 75050726 |
| ENSE00002598893 | 75023590 | 75023626 |
| ENSE00003519225 | 75028247 | 75028453 |
| ENSE00003599224 | 75048553 | 75048721 |
| ENSE00003603188 | 75043441 | 75043536 |
| ENSE00003645653 | 75044386 | 75044514 |
Expression profiles
Bgee: expression breadth ubiquitous, 224 present calls, max score 89.76.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.0146 / max 907.1011, expressed in 1632 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 147758 | 3.1351 | 1538 |
| 147761 | 1.9965 | 169 |
| 147760 | 1.7178 | 213 |
| 147757 | 0.5294 | 263 |
| 147763 | 0.5038 | 70 |
| 147762 | 0.1320 | 26 |
Top tissues by expression
276 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| blood | UBERON:0000178 | 89.76 | gold quality |
| granulocyte | CL:0000094 | 89.75 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 89.42 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 88.46 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 87.52 | gold quality |
| monocyte | CL:0000576 | 87.48 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 87.38 | gold quality |
| right adrenal gland | UBERON:0001233 | 87.36 | gold quality |
| leukocyte | CL:0000738 | 87.14 | gold quality |
| mononuclear cell | CL:0000842 | 87.14 | gold quality |
| left adrenal gland | UBERON:0001234 | 86.80 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 86.68 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 86.49 | gold quality |
| body of pancreas | UBERON:0001150 | 86.16 | gold quality |
| esophagus mucosa | UBERON:0002469 | 85.50 | gold quality |
| adrenal cortex | UBERON:0001235 | 85.05 | gold quality |
| adrenal gland | UBERON:0002369 | 85.00 | gold quality |
| spleen | UBERON:0002106 | 84.31 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 83.88 | gold quality |
| pancreas | UBERON:0001264 | 82.95 | gold quality |
| esophagus | UBERON:0001043 | 82.86 | gold quality |
| tibial nerve | UBERON:0001323 | 82.85 | gold quality |
| left coronary artery | UBERON:0001626 | 82.68 | gold quality |
| body of stomach | UBERON:0001161 | 82.64 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 82.62 | gold quality |
| right lobe of liver | UBERON:0001114 | 82.59 | gold quality |
| minor salivary gland | UBERON:0001830 | 82.44 | gold quality |
| popliteal artery | UBERON:0002250 | 82.37 | gold quality |
| tibial artery | UBERON:0007610 | 82.35 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 82.27 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 10.06 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
38 targeting PPCDC, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-512-3P | 99.97 | 67.35 | 1049 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-4496 | 99.88 | 68.89 | 2236 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-4527 | 99.66 | 67.43 | 714 |
| HSA-MIR-6720-5P | 99.65 | 66.22 | 1459 |
| HSA-MIR-6512-3P | 99.65 | 66.07 | 1468 |
| HSA-MIR-671-5P | 99.52 | 67.11 | 1277 |
| HSA-MIR-5693 | 99.24 | 66.67 | 1106 |
| HSA-MIR-4291 | 99.20 | 68.88 | 2969 |
| HSA-MIR-5100 | 99.11 | 67.52 | 1098 |
| HSA-MIR-7160-5P | 99.11 | 67.17 | 2207 |
| HSA-MIR-4738-3P | 98.98 | 67.98 | 1846 |
| HSA-MIR-939-3P | 98.97 | 65.07 | 2347 |
| HSA-MIR-4716-5P | 98.82 | 68.57 | 1168 |
| HSA-MIR-330-5P | 98.73 | 67.63 | 1788 |
| HSA-MIR-6776-5P | 98.54 | 67.43 | 1304 |
| HSA-MIR-518C-5P | 98.53 | 69.20 | 1640 |
| HSA-MIR-135A-2-3P | 98.40 | 66.74 | 442 |
| HSA-MIR-135B-3P | 98.40 | 67.35 | 426 |
| HSA-MIR-6776-3P | 98.38 | 66.34 | 655 |
| HSA-MIR-10226 | 98.25 | 66.50 | 811 |
| HSA-MIR-4294 | 97.86 | 65.72 | 1110 |
| HSA-MIR-6765-3P | 97.83 | 64.59 | 1165 |
| HSA-MIR-4799-3P | 97.78 | 65.97 | 893 |
| HSA-MIR-4314 | 97.50 | 67.30 | 1369 |
| HSA-MIR-4720-5P | 97.46 | 65.67 | 893 |
| HSA-MIR-5588-5P | 97.46 | 65.70 | 913 |
| HSA-MIR-4640-5P | 97.42 | 66.33 | 1543 |
| HSA-MIR-4726-5P | 97.24 | 65.67 | 1299 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 15.0% of screened cell lines.
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ppcdc | ENSDARG00000033020 |
| mus_musculus | Ppcdc | ENSMUSG00000063849 |
| rattus_norvegicus | Ppcdc | ENSRNOG00000053404 |
| rattus_norvegicus | ENSRNOG00000084814 | |
| drosophila_melanogaster | Ppcdc | FBGN0050290 |
| caenorhabditis_elegans | WBGENE00009138 |
Protein
Protein identifiers
Phosphopantothenoylcysteine decarboxylase — Q96CD2 (reviewed: Q96CD2)
Alternative names: CoaC
All UniProt accessions (7): Q96CD2, H3BPW5, H3BQB0, H3BRQ0, H3BSE3, H3BU34, H3BU63
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the decarboxylation of the cysteine moiety of 4-phosphopantothenoylcysteine to form 4’-phosphopantotheine and this reaction forms part of the biosynthesis of coenzyme A.
Subunit / interactions. Homotrimer.
Cofactor. Binds 1 FMN per subunit.
Pathway. Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 3/5.
Miscellaneous. The Met-1 codon is associated with a polymorphism (dbSNP:rs2304899) that replaces the initiation ATG codon by an ATA codon.
Similarity. Belongs to the HFCD (homooligomeric flavin containing Cys decarboxylase) superfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96CD2-1 | 1 | yes |
| Q96CD2-2 | 2 |
RefSeq proteins (6): NP_001288030, NP_001288031, NP_001288032, NP_001288033, NP_001288034, NP_068595* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003382 | Flavoprotein | Domain |
| IPR036551 | Flavin_trans-like | Homologous_superfamily |
Pfam: PF02441
Catalyzed reactions (Rhea), 1 shown:
- N-[(R)-4-phosphopantothenoyl]-L-cysteine + H(+) = (R)-4’-phosphopantetheine + CO2 (RHEA:16793)
UniProt features (24 total): helix 11, strand 4, binding site 3, chain 1, active site 1, splice variant 1, sequence variant 1, mutagenesis site 1, sequence conflict 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1QZU | X-RAY DIFFRACTION | 2.91 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96CD2-F1 | 90.82 | 0.79 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 173 (proton donor)
Ligand- & substrate-binding residues (3): 59; 104–107; 140
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 173 | loss of activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-196783 | Coenzyme A biosynthesis |
MSigDB gene sets: 182 (showing top):
GOBP_COENZYME_A_METABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, GOBP_SULFUR_COMPOUND_BIOSYNTHETIC_PROCESS, MARTINEZ_RB1_TARGETS_DN, GOBP_AMIDE_METABOLIC_PROCESS, GOBP_AMIDE_BIOSYNTHETIC_PROCESS, GARCIA_TARGETS_OF_FLI1_AND_DAX1_DN, GOBP_COENZYME_A_BIOSYNTHETIC_PROCESS, GRYDER_PAX3FOXO1_ENHANCERS_IN_TADS, GOBP_PURINE_CONTAINING_COMPOUND_METABOLIC_PROCESS, ACTWSNACTNY_UNKNOWN, GOMF_CARBOXY_LYASE_ACTIVITY
GO Biological Process (1): coenzyme A biosynthetic process (GO:0015937)
GO Molecular Function (7): phosphopantothenoylcysteine decarboxylase activity (GO:0004633), FMN binding (GO:0010181), identical protein binding (GO:0042802), catalytic activity (GO:0003824), protein binding (GO:0005515), lyase activity (GO:0016829), carboxy-lyase activity (GO:0016831)
GO Cellular Component (2): cytosol (GO:0005829), phosphopantothenoylcysteine decarboxylase complex (GO:0071513)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Vitamin B5 (pantothenate) metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cytoplasm | 2 |
| coenzyme A metabolic process | 1 |
| sulfur compound biosynthetic process | 1 |
| purine-containing compound biosynthetic process | 1 |
| nucleoside phosphate biosynthetic process | 1 |
| carboxy-lyase activity | 1 |
| ribonucleotide binding | 1 |
| anion binding | 1 |
| protein binding | 1 |
| molecular_function | 1 |
| binding | 1 |
| catalytic activity | 1 |
| carbon-carbon lyase activity | 1 |
| cellular anatomical structure | 1 |
| catalytic complex | 1 |
Protein interactions and networks
STRING
1014 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PPCDC | COASY | Q13057 | 986 |
| PPCDC | PPCS | Q9HAB8 | 957 |
| PPCDC | PANK1 | Q8TE04 | 763 |
| PPCDC | PANK2 | Q9BZ23 | 695 |
| PPCDC | PANK3 | Q9H999 | 686 |
| PPCDC | PANK4 | Q9NVE7 | 593 |
| PPCDC | PPAN | Q9NQ55 | 577 |
| PPCDC | KTI12 | Q96EK9 | 491 |
| PPCDC | A0A0B4J1V8 | A0A0B4J1V8 | 473 |
| PPCDC | DCAKD | Q8WVC6 | 463 |
| PPCDC | SCAMP5 | Q8TAC9 | 450 |
| PPCDC | PGP | A6NDG6 | 438 |
| PPCDC | HMG20A | Q9NP66 | 437 |
| PPCDC | MMAB | Q96EY8 | 429 |
| PPCDC | F8W876 | F8W876 | 419 |
IntAct
72 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PPCDC | FOXR1 | psi-mi:“MI:0915”(physical association) | 0.780 |
| FOXR1 | PPCDC | psi-mi:“MI:0915”(physical association) | 0.780 |
| PPCDC | PPCDC | psi-mi:“MI:0915”(physical association) | 0.750 |
| PPCDC | PPCDC | psi-mi:“MI:0407”(direct interaction) | 0.750 |
| NTAQ1 | PPCDC | psi-mi:“MI:0915”(physical association) | 0.720 |
| PPCDC | TXN2 | psi-mi:“MI:0915”(physical association) | 0.720 |
| ZNF232 | PPCDC | psi-mi:“MI:0915”(physical association) | 0.720 |
| PPCDC | NTAQ1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| PPCDC | ZNF232 | psi-mi:“MI:0915”(physical association) | 0.720 |
| PPCDC | PPIG | psi-mi:“MI:0915”(physical association) | 0.560 |
| SREK1IP1 | PPCDC | psi-mi:“MI:0915”(physical association) | 0.560 |
| PPIG | PPCDC | psi-mi:“MI:0915”(physical association) | 0.560 |
| PPCDC | GCD7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TAE1 | PPCDC | psi-mi:“MI:0915”(physical association) | 0.560 |
| VHS3 | PPCDC | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (27): PPCDC (Two-hybrid), PPCDC (Two-hybrid), PPCDC (Two-hybrid), PPCDC (Two-hybrid), PPCDC (Two-hybrid), FOXR1 (Two-hybrid), SREK1IP1 (Two-hybrid), PPCDC (Two-hybrid), PPCDC (Two-hybrid), ZNF232 (Two-hybrid), PPCDC (Two-hybrid), PPCDC (Two-hybrid), PPCDC (Two-hybrid), PPCDC (Affinity Capture-MS), PPCDC (Two-hybrid)
ESM2 similar proteins: A0A6N3IN21, A2AI05, A4IFH5, D3ZDK7, O00764, O08557, O35331, O35678, O46560, O75452, O94760, O95671, P0DPI2, P10950, P11172, P13439, P24298, P56965, Q2T9S4, Q2TBT5, Q3KRC5, Q4JIJ2, Q5E9T8, Q5I0K3, Q5R514, Q5R7A2, Q5RFI8, Q6SKR2, Q7TSV4, Q86V88, Q8BZB2, Q8C1A3, Q8CHP8, Q8HZJ0, Q8K183, Q8N0X4, Q8R238, Q8R431, Q8R4N0, Q91XI1
Diamond homologs: A0A2I9, A0A498JQK2, A0QWT2, C6SZ50, C6TA59, O35033, O51752, P0ABQ0, P0ABQ1, P30197, P36024, P36076, P44953, P67734, P73881, P94063, P9WNZ0, P9WNZ1, Q08438, Q12600, Q54433, Q54Y51, Q58140, Q58323, Q5E8M6, Q5JF17, Q69K55, Q7MPS9, Q87T89, Q8BZB2, Q8DDX8, Q96CD2, Q9KVD1, Q9RC23, Q9SWE5, Q9UTI7, Q57566, Q9JW78, Q9JXP4
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | PPCDC | ubiquitination |
Disease & clinical
Clinical variants and AI predictions
ClinVar
43 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 29 |
| Likely benign | 5 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
873 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:75044383:CAGAT:C | acceptor_loss | 1.0000 |
| 15:75044384:A:G | acceptor_loss | 1.0000 |
| 15:75044385:GAT:G | acceptor_gain | 1.0000 |
| 15:75044511:GCTT:G | donor_gain | 1.0000 |
| 15:75044515:G:GG | donor_gain | 1.0000 |
| 15:75023623:GCGG:G | donor_gain | 0.9900 |
| 15:75023624:CGGGT:C | donor_loss | 0.9900 |
| 15:75023625:GG:G | donor_gain | 0.9900 |
| 15:75023625:GGGTG:G | donor_loss | 0.9900 |
| 15:75023626:GG:G | donor_gain | 0.9900 |
| 15:75023627:G:GG | donor_gain | 0.9900 |
| 15:75023627:GT:G | donor_loss | 0.9900 |
| 15:75023628:T:G | donor_loss | 0.9900 |
| 15:75043432:T:A | acceptor_gain | 0.9900 |
| 15:75044380:T:TA | acceptor_gain | 0.9900 |
| 15:75044384:A:AG | acceptor_gain | 0.9900 |
| 15:75044385:G:GA | acceptor_gain | 0.9900 |
| 15:75044385:GATAT:G | acceptor_gain | 0.9900 |
| 15:75044487:GGCC:G | donor_gain | 0.9900 |
| 15:75044510:TGCTT:T | donor_gain | 0.9900 |
| 15:75044511:GCTTG:G | donor_gain | 0.9900 |
| 15:75044513:TT:T | donor_gain | 0.9900 |
| 15:75048549:ACAGA:A | acceptor_loss | 0.9900 |
| 15:75048550:C:G | acceptor_gain | 0.9900 |
| 15:75048550:CA:C | acceptor_loss | 0.9900 |
| 15:75048551:A:AG | acceptor_gain | 0.9900 |
| 15:75048551:A:C | acceptor_loss | 0.9900 |
| 15:75048552:G:GT | acceptor_gain | 0.9900 |
| 15:75048552:GA:G | acceptor_gain | 0.9900 |
| 15:75048552:GAC:G | acceptor_gain | 0.9900 |
AlphaMissense
1339 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:75044502:T:G | C116W | 0.994 |
| 15:75048571:T:A | W127R | 0.994 |
| 15:75048571:T:C | W127R | 0.994 |
| 15:75043457:T:A | V51D | 0.993 |
| 15:75044501:G:A | C116Y | 0.993 |
| 15:75048612:C:A | N140K | 0.992 |
| 15:75048612:C:G | N140K | 0.992 |
| 15:75043480:T:C | F59L | 0.991 |
| 15:75043482:C:A | F59L | 0.991 |
| 15:75043482:C:G | F59L | 0.991 |
| 15:75048598:T:C | C136R | 0.991 |
| 15:75048600:C:G | C136W | 0.991 |
| 15:75044411:T:A | V86D | 0.990 |
| 15:75044416:C:G | H88D | 0.990 |
| 15:75048621:G:A | M143I | 0.990 |
| 15:75048621:G:C | M143I | 0.990 |
| 15:75048621:G:T | M143I | 0.990 |
| 15:75028397:A:C | S27R | 0.989 |
| 15:75028399:T:A | S27R | 0.989 |
| 15:75028399:T:G | S27R | 0.989 |
| 15:75043531:T:A | W76R | 0.989 |
| 15:75043531:T:C | W76R | 0.989 |
| 15:75043533:G:C | W76C | 0.989 |
| 15:75043533:G:T | W76C | 0.989 |
| 15:75044456:C:A | A101D | 0.989 |
| 15:75028377:T:A | V20D | 0.988 |
| 15:75028386:G:A | G23D | 0.988 |
| 15:75044426:T:C | L91P | 0.988 |
| 15:75044444:T:C | L97P | 0.988 |
| 15:75028395:G:A | G26E | 0.987 |
dbSNP variants (sampled 300 via entrez): RS1000109652 (15:75044061 G>A), RS1000121286 (15:75034467 A>G), RS1000292006 (15:75049508 C>T), RS1000366152 (15:75046301 C>G), RS1000380931 (15:75037719 T>A), RS1000405087 (15:75040666 T>A), RS1000432305 (15:75040925 A>C), RS1000513853 (15:75048353 T>C), RS1000578935 (15:75049750 C>T), RS1001211998 (15:75037009 A>G), RS1001670576 (15:75027764 T>C), RS1002182350 (15:75031695 C>T), RS1002193930 (15:75025014 C>G), RS1002262280 (15:75030789 G>A), RS1002271076 (15:75026049 A>C)
Disease associations
OMIM: gene MIM:609854 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| dilated cardiomyopathy | Limited | Autosomal recessive |
Mondo (1): dilated cardiomyopathy (MONDO:0005021)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
17 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001032_1 | Caffeine consumption | 6.000000e-07 |
| GCST002040_2 | Blood trace element (Zn levels) | 2.000000e-18 |
| GCST003155_18 | Systemic lupus erythematosus | 6.000000e-15 |
| GCST006979_936 | Heel bone mineral density | 1.000000e-12 |
| GCST009153_1 | Adverse response to chemotherapy (amenorrhea) in breast cancer | 6.000000e-09 |
| GCST010108_23 | Coffee consumption (cups per day) | 1.000000e-10 |
| GCST010108_24 | Coffee consumption (cups per day) | 2.000000e-17 |
| GCST010241_289 | Apolipoprotein A1 levels | 6.000000e-09 |
| GCST012332_41 | Multisite chronic pain | 2.000000e-08 |
| GCST012332_42 | Multisite chronic pain | 2.000000e-08 |
| GCST90002388_154 | Lymphocyte count | 2.000000e-09 |
| GCST90002391_150 | Mean corpuscular hemoglobin concentration | 1.000000e-15 |
| GCST90002396_638 | Mean reticulocyte volume | 5.000000e-13 |
| GCST90002398_286 | Neutrophil count | 1.000000e-12 |
| GCST90002402_167 | Platelet count | 4.000000e-17 |
| GCST90002406_389 | Reticulocyte fraction of red cells | 4.000000e-11 |
| GCST90002407_595 | White blood cell count | 5.000000e-12 |
EFO canonical traits (10, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004330 | coffee consumption |
| EFO:0009270 | heel bone mineral density |
| EFO:0006782 | cups of coffee per day measurement |
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0010100 | multisite chronic pain |
| EFO:0004587 | lymphocyte count |
| EFO:0004528 | mean corpuscular hemoglobin concentration |
| EFO:0010701 | mean reticulocyte volume |
| EFO:0004833 | neutrophil count |
| EFO:0004309 | platelet count |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs147451859 | Toxicity | 3 | docetaxel;FEC100;gemcitabine;trastuzumab;zoledronate | Amenorrhea |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs147451859 | PPCDC | 3 | 0.00 | 1 | docetaxel;FEC100;gemcitabine;trastuzumab;zoledronate |
CTD chemical–gene interactions
27 total (human), top 27 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases abundance, increases expression | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| beta-lapachone | increases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| cobaltous chloride | decreases expression | 1 |
| ferrous chloride | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| abrine | increases expression | 1 |
| jinfukang | increases expression | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Arsenic | increases abundance, increases expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Cisplatin | increases expression | 1 |
| Coumestrol | increases expression | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Quercetin | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Zinc | affects abundance | 1 |
| Cyclosporine | increases expression | 1 |
| Copper Sulfate | affects expression | 1 |
Clinical trials (associated diseases)
158 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00374465 | PHASE4 | UNKNOWN | Therapy With Verapamil or Carvedilol in Chronic Heart Failure |
| NCT01293903 | PHASE4 | COMPLETED | Study of Qiliqiangxin Capsule to Treat Dilated Cardiomyopathy |
| NCT01557140 | PHASE4 | COMPLETED | A Randomized Trial of Carvedilol in Chronic Chagas Cardiomyopathy |
| NCT01917149 | PHASE4 | COMPLETED | Supramaximal Titrated Inhibition of RAAS in Dilated Cardiomyopathy |
| NCT02115581 | PHASE4 | COMPLETED | Coenzyme Q10 Supplementation in Children With Idiopathic Dilated Cardiomyopathy |
| NCT06236022 | PHASE4 | RECRUITING | The Effects of Sirolimus in Patients With Dilated Cardiomyopathy Infected With Kaposi Sarcoma-associated Virus |
| NCT00333827 | PHASE3 | COMPLETED | Cell Therapy In Dilated Cardiomyopathy |
| NCT00505154 | PHASE3 | COMPLETED | Effect of Rosuvastatin on Left Ventricular Remodeling |
| NCT01223703 | PHASE3 | COMPLETED | PUFAs and Left Ventricular Function in Heart Failure |
| NCT01583114 | PHASE3 | TERMINATED | PREclinical Mutation CARriers From Families With DIlated Cardiomyopathy and ACE Inhibitors |
| NCT01914081 | PHASE3 | UNKNOWN | Resveratrol: A Potential Anti- Remodeling Agent in Heart Failure, From Bench to Bedside |
| NCT02989181 | PHASE3 | UNKNOWN | Continues Positive Airway Pressure Treatment for Patients With Dilated Cardiomyopathy and Obstructive Sleep Apnea |
| NCT03439514 | PHASE3 | TERMINATED | A Study of ARRY-371797 (PF-07265803) in Patients With Symptomatic Dilated Cardiomyopathy Due to a Lamin A/C Gene Mutation |
| NCT05237323 | PHASE3 | COMPLETED | Micophenolate Mofetil Versus Azathioprine in Myocarditis |
| NCT05849766 | PHASE3 | COMPLETED | Effect of Dapagliflozin on Cardiac Structure, Function and Secondary Mitral Regurgitation in Patients with Left Ventricle Dysfunction |
| NCT06250257 | PHASE3 | RECRUITING | Bromocriptine in Dilated Cardiomyopathy Among Women of Reproductive Age |
| NCT00629018 | PHASE2 | COMPLETED | Safety and Efficacy Study of Stem Cell Transplantation to Treat Dilated Cardiomyopathy |
| NCT00629096 | PHASE2 | COMPLETED | Intracoronary Infusion of Autologous Bone Marrow Cells for Treatment of Idiopathic Dilated Cardiomyopathy |
| NCT00765518 | PHASE2 | COMPLETED | Use of Ixmyelocel-T (Formerly Cardiac Repair Cell [CRC] Treatment) in Patients With Heart Failure Due to Dilated Cardiomyopathy (IMPACT-DCM) |
| NCT00847964 | PHASE2 | COMPLETED | Safety and Feasibility of Algisyl-LVR™ as a Method of Left Ventricular Restoration in Patients With DCM Undergoing Open-heart Surgery |
| NCT01020968 | PHASE2 | COMPLETED | Use of Ixmyelocel-T (Formerly Catheter-based Cardiac Repair Cell [CRC]) Treatment in Patients With Heart Failure Due to Dilated Cardiomyopathy |
| NCT01302171 | PHASE2 | COMPLETED | Bone Marrow Derived Adult Stem Cells for Dilated Cardiomyopathy |
| NCT01350310 | PHASE2 | COMPLETED | Safety and Efficacy Study of Intramyocardial Stem Cell Therapy in Patients With Dilated Cardiomyopathy |
| NCT02133911 | PHASE2 | COMPLETED | A Pilot Trial of Ranolazine to Treat Patients With Dilated Cardiomyopathy |
| NCT03071653 | PHASE2 | SUSPENDED | Left Cardiac Sympathetic Denervation for Cardiomyopathy Feasibility Pilot Study |
| NCT03572660 | PHASE2 | ACTIVE_NOT_RECRUITING | Use of Bone Marrow Derived Stem Cell and G-CSF With Circulatory Assistance in the Treatment of DCM |
| NCT03775070 | PHASE2 | COMPLETED | Simvastatin Therapy in Patients With Dilated Cardiomyopathy. |
| NCT04405804 | PHASE2 | UNKNOWN | Early Administration of Ivabradine in Children With Heart Failure |
| NCT05410873 | PHASE2 | COMPLETED | Examining the Effects of Mitochondrial Oxidative Stress in DCM |
| NCT06632834 | PHASE2 | RECRUITING | Outcome-targeted Therapy: Principle and Outcome Evaluation: Clinical Study and Phenotype-genotype Correlation |
| NCT00585546 | PHASE1 | TERMINATED | Harefield Recovery Protocol Study for Patients With Refractory Chronic Heart Failure |
| NCT02293603 | PHASE1 | UNKNOWN | Dilated cardiomYopathy iNtervention With Allogeneic MyocardIally-regenerative Cells (DYNAMIC) |
| NCT03062956 | PHASE1 | COMPLETED | A Single Ascending Dose Study Assessing the Safety, Tolerability, PK and PD of MYK-491 |
| NCT03129568 | PHASE1 | COMPLETED | Transcoronary Infusion of Cardiac Progenitor Cells in Pediatric Dilated Cardiomyopathy |
| NCT04982081 | PHASE1 | UNKNOWN | Treating Congestive HF With hiPSC-CMs Through Endocardial Injection |
| NCT06381466 | PHASE1 | TERMINATED | A Study to Investigate Safety, Tolerability, and Pharmacokinetics of Oral AZD0233 Compared With Placebo in Healthy Adult Participants. |
| NCT06464588 | PHASE1 | RECRUITING | A Phase 1 Open-Label Study of the Safety of Intravenous Allogeneic Neonatal Mesenchymal Cells (nMSCs) in Young Adult (1A) and Pediatric (1B) Patients With Dilated Cardiomyopathy (DCM) |
| NCT06902896 | PHASE1 | COMPLETED | Safety and Efficacy of FAP iCDC in End-stage Dilated Cardiomyopathy |
| NCT07137338 | PHASE1 | RECRUITING | A Phase 1 AAV Gene Therapy Trial Evaluating Safety and Preliminary Efficacy of RP-A701 in Subjects With BAG3 Dilated Cardiomyopathy |
| NCT07241104 | PHASE1 | RECRUITING | A Study of AZD4063 in PLN R14del Dilated Cardiomyopathy |
Related Atlas pages
- Associated diseases: dilated cardiomyopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): amenorrhea, dilated cardiomyopathy