PPP1CB
gene geneOn this page
Also known as PP1CbetaPPP1CDPP1CdeltaPP1BPP-1BPP1betaPP1cMPPPP1beta
Summary
PPP1CB (protein phosphatase 1 catalytic subunit beta, HGNC:9282) is a protein-coding gene on chromosome 2p23.2, encoding Serine/threonine-protein phosphatase PP1-beta catalytic subunit (P62140). Protein phosphatase that associates with over 200 regulatory proteins to form highly specific holoenzymes which dephosphorylate hundreds of biological targets. It is a selective cancer dependency (DepMap: 89.6% of cell lines).
The protein encoded by this gene is one of the three catalytic subunits of protein phosphatase 1 (PP1). PP1 is a serine/threonine specific protein phosphatase known to be involved in the regulation of a variety of cellular processes, such as cell division, glycogen metabolism, muscle contractility, protein synthesis, and HIV-1 viral transcription. Mouse studies suggest that PP1 functions as a suppressor of learning and memory. Two alternatively spliced transcript variants encoding distinct isoforms have been observed.
Source: NCBI Gene 5500 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Noonan syndrome-like disorder with loose anagen hair (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 8
- Clinical variants (ClinVar): 366 total — 4 pathogenic, 8 likely-pathogenic
- Phenotypes (HPO): 99
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 89.6% of screened cell lines
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_002709
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9282 |
| Approved symbol | PPP1CB |
| Name | protein phosphatase 1 catalytic subunit beta |
| Location | 2p23.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PP1Cbeta, PPP1CD, PP1Cdelta, PP1B, PP-1B, PP1beta, PP1c, MP, PPP1beta |
| Ensembl gene | ENSG00000213639 |
| Ensembl biotype | protein_coding |
| OMIM | 600590 |
| Entrez | 5500 |
Gene structure
Transcript identifiers
Ensembl transcripts: 34 — 28 protein_coding, 3 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000296122, ENST00000395366, ENST00000418910, ENST00000420282, ENST00000427786, ENST00000441461, ENST00000455580, ENST00000464273, ENST00000703171, ENST00000703172, ENST00000703173, ENST00000703174, ENST00000703175, ENST00000703176, ENST00000703177, ENST00000703183, ENST00000868409, ENST00000868410, ENST00000868411, ENST00000868412, ENST00000868413, ENST00000868414, ENST00000930106, ENST00000941104, ENST00000941105, ENST00000941106, ENST00000941107, ENST00000941108, ENST00000941109, ENST00000941110, ENST00000941111, ENST00000941112, ENST00000941113, ENST00000941114
RefSeq mRNA: 2 — MANE Select: NM_002709
NM_002709, NM_206876
CCDS: CCDS33169
Canonical transcript exons
ENST00000395366 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001623145 | 28781738 | 28781842 |
| ENSE00001906903 | 28799199 | 28802940 |
| ENSE00001932380 | 28751830 | 28752176 |
| ENSE00003512678 | 28776851 | 28776982 |
| ENSE00003786696 | 28783907 | 28783978 |
| ENSE00003789746 | 28778809 | 28779039 |
| ENSE00003988242 | 28788658 | 28788809 |
| ENSE00003988257 | 28793863 | 28793997 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 99.17.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 77.1754 / max 868.3864, expressed in 1825 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 19485 | 45.8500 | 1796 |
| 19482 | 32.5463 | 1810 |
| 19484 | 30.1879 | 1812 |
| 19481 | 4.4724 | 1598 |
| 19480 | 4.0847 | 1495 |
| 19477 | 2.2340 | 1020 |
| 19478 | 1.3363 | 797 |
| 19479 | 1.0931 | 655 |
| 19487 | 0.6681 | 337 |
| 19483 | 0.5526 | 313 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 99.17 | gold quality |
| amniotic fluid | UBERON:0000173 | 99.11 | gold quality |
| buccal mucosa cell | CL:0002336 | 99.10 | gold quality |
| ventricular zone | UBERON:0003053 | 99.03 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 98.98 | gold quality |
| tendon | UBERON:0000043 | 98.91 | gold quality |
| lower esophagus | UBERON:0013473 | 98.91 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 98.91 | gold quality |
| popliteal artery | UBERON:0002250 | 98.90 | gold quality |
| tibial artery | UBERON:0007610 | 98.90 | gold quality |
| aorta | UBERON:0000947 | 98.83 | gold quality |
| artery | UBERON:0001637 | 98.82 | gold quality |
| thoracic aorta | UBERON:0001515 | 98.74 | gold quality |
| ascending aorta | UBERON:0001496 | 98.73 | gold quality |
| ganglionic eminence | UBERON:0004023 | 98.73 | gold quality |
| caput epididymis | UBERON:0004358 | 98.73 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 98.72 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 98.71 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 98.67 | gold quality |
| mucosa of stomach | UBERON:0001199 | 98.65 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 98.61 | gold quality |
| parotid gland | UBERON:0001831 | 98.60 | gold quality |
| muscle of leg | UBERON:0001383 | 98.58 | gold quality |
| cauda epididymis | UBERON:0004360 | 98.56 | gold quality |
| gastrocnemius | UBERON:0001388 | 98.55 | gold quality |
| blood vessel layer | UBERON:0004797 | 98.51 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 98.51 | gold quality |
| left coronary artery | UBERON:0001626 | 98.45 | gold quality |
| esophagus | UBERON:0001043 | 98.44 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 98.44 | gold quality |
Single-cell (SCXA)
Detected in 13 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8498 | yes | 14099.04 |
| E-GEOD-111727 | yes | 6032.78 |
| E-MTAB-10287 | yes | 44.11 |
| E-GEOD-135922 | yes | 26.94 |
| E-GEOD-134144 | yes | 11.19 |
| E-HCAD-9 | yes | 5.45 |
| E-CURD-97 | no | 11764.67 |
| E-CURD-6 | no | 10867.14 |
| E-GEOD-76312 | no | 7474.83 |
| E-CURD-89 | no | 2696.07 |
| E-MTAB-9154 | no | 627.41 |
| E-MTAB-6524 | no | 307.68 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): GLI2, TEAD4
miRNA regulators (miRDB)
165 targeting PPP1CB, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-1193 | 100.00 | 65.93 | 529 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
DepMap (CRISPR cell-line fitness): dependent in 89.6% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 31)
- In this study, we show that protein phosphatase-1 (PP1) inhibitor-3 (Inh3) is localized to the nucleoli and centrosomes in interphase HEK 293 cells. (PMID:16256067)
- R16A at the membrane may mediate the PB signal to initiate CAR nuclear translocation, through a mechanism including its dimerization and inhibition of PP1beta activity. (PMID:18202305)
- PP-1 ( PP-1alpha or PP-1beta ) acts as a major phosphatase to dephosphorylate AKT1 at Thr-450 and thus modulate its functions in regulating gene expression, cell survival and differentiation. (PMID:20186153)
- mammalian Wdr82 functions in a variety of cellular processes; PTW/PP1 phosphatase complex (PNUTS, Tox4, Wdr82, PP1) has a role in the regulation of chromatin structure during the transition from mitosis into interphase (PMID:20516061)
- serine/threonine protein phosphatase PP1beta is a physiological Nucleophosmin (NPM) phosphatase under both the genotoxic stress and growth conditions. (PMID:20962268)
- Data suggest that double-thiophosphorylation of TIMAP has minor effect on its binding ability to PP1c, but considerably attenuates its inhibitory effect on the activity of PP1c. (PMID:21466834)
- PPP1CB is over expressed in malignant melanoma. (PMID:21566537)
- Protein phosphatase 1beta (PP1beta) is identified as a phosphatase for the cluster of phosphorylated threonines ((353)TTETQRT(359)) within the sst(2A) somatostatin receptor carboxyl terminus that mediates beta-arrestin binding using siRNA knock-down screening. (PMID:21795688)
- Studies suggest that any change in substrate specificity of the spinophilin : PP1 holoenzyme complex was probably due to direct modification of a PP1 substrate binding surface. (PMID:22284538)
- Studies indicate that the Ser/Thr phosphatases PP1 and PP2A are responsible for the dephosphorylation and activation of Rb proteins. (PMID:22299668)
- Studies indicate that the diversity of the PP1 interactome and the properties of the PP1 binding code account for the exquisite specificity of PP1 in vivo. (PMID:22360570)
- These findings provide evidence for the involvement of a particular PP1 complex, PPP1R12A/PP1cdelta, in insulin signaling. (PMID:22728334)
- Interaction between protein phosphatase 1 beta and myosin phosphatase (MYPT)1 results in exclusion of Nkx2.5 from the cell nucleus. (PMID:23168335)
- PPP1C isoforms have distinct contribution to the outside-in alphaIIbbeta3 signalling-dependent functions in HEK293 alphaIIbbeta3 cells. (PMID:23197154)
- results indicate that SCN-iPS cells provide a useful disease model for SCN, and the activation of the Wnt3a/beta-catenin pathway may offer a novel therapy for SCN with ELANE mutation (PMID:23382248)
- Findings show that PP1cbeta plays a role in endothelial cell migration through a mechanism involving the interplay of actin cytoskeleton proteins and focal adhesion molecules signaling. (PMID:25967976)
- These results suggest a unique functional role for the PP1beta isoform in affecting cardiac contractile function (PMID:26334248)
- Missense mutations in PPP1CB are associated with a phenotype resembling NS-LAH. Based on this phenotype and PPP1CB’s known role within the RAS/MAPK pathway, we think that this condition is a novel rasopathy, which may be provisionally termed “PPP1CB-related Noonan syndrome with loose anagen hair” (P-NS-LAH). (PMID:27264673)
- this study shows a pivotal role for PP1 in impeding IRF7-mediated IFN-alpha production in host immune responses (PMID:27469204)
- Our data suggest that our heterozygous de novo PPP1CB pathogenic variants are associated with syndromic intellectual disability. (PMID:27681385)
- This report gives further support that this novel RASopathy-PPP1CB-related Noonan syndrome with loose anagen hair-shares great similarity to Noonan syndrome-like disorder with loose anagen hair, and expands the phenotypic spectrum by adding the cranial vault abnormality. (PMID:28211982)
- PPP1CB mutation is associated with Noonan syndrome. (PMID:30368668)
- Activating MRAS mutations cause Noonan syndrome associated with hypertrophic cardiomyopathy. (PMID:31108500)
- The association of MYPT1 with PP1cbeta was profoundly reduced in the presence of excess TIMAP, leading to proteasomal MYPT1 degradation. (PMID:31315927)
- our experiments support that PPP1CB and KPC2 together inhibit the activity of HOXA2 by activating its nuclear export, but favored HOXA2 de-ubiquitination and stabilization thereby establishing a store of HOXA2 in the cytoplasm. (PMID:31323436)
- Integrative genomics analysis of eQTL and GWAS summary data identifies PPP1CB as a novel bone mineral density risk genes. (PMID:32266926)
- A case report of Noonan syndrome-like disorder with loose anagen hair 2 treated with recombinant human growth hormone. (PMID:32476286)
- Noonan syndrome with loose anagen hair with variants in the PPP1CB gene: First familial case reported. (PMID:33491856)
- The expression and clinical prognostic value of protein phosphatase 1 catalytic subunit beta in pancreatic cancer. (PMID:34125004)
- PP-1beta and PP-2Aalpha modulate cAMP response element-binding protein (CREB) functions in aging control and stress response through de-regulation of alphaB-crystallin gene and p300-p53 signaling axis. (PMID:34425033)
- Histones Methyltransferase NSD3 Inhibits Lung Adenocarcinoma Glycolysis Through Interacting with PPP1CB to Decrease STAT3 Signaling Pathway. (PMID:39119928)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ppp1cb | ENSDARG00000044153 |
| danio_rerio | ppp1cbl | ENSDARG00000102012 |
| mus_musculus | Ppp1cb | ENSMUSG00000014956 |
| rattus_norvegicus | Ppp1cb | ENSRNOG00000004612 |
| rattus_norvegicus | ENSRNOG00000069573 | |
| rattus_norvegicus | ENSRNOG00000084581 | |
| drosophila_melanogaster | flw | FBGN0000711 |
| caenorhabditis_elegans | WBGENE00001747 |
Paralogs (12): PPP5C (ENSG00000011485), PPEF1 (ENSG00000086717), PPP2CB (ENSG00000104695), PPP3CB (ENSG00000107758), PPP2CA (ENSG00000113575), PPP6C (ENSG00000119414), PPP3CC (ENSG00000120910), PPP3CA (ENSG00000138814), PPP4C (ENSG00000149923), PPEF2 (ENSG00000156194), PPP1CA (ENSG00000172531), PPP1CC (ENSG00000186298)
Protein
Protein identifiers
Serine/threonine-protein phosphatase PP1-beta catalytic subunit — P62140 (reviewed: P62140)
All UniProt accessions (10): A0A8V8TQ71, A0A8V8TR83, A0A8V8TRH9, B4DJ75, C9J9S3, C9JP48, P62140, F8WE71, H0Y3Y6, V9HW04
UniProt curated annotations — full annotation on UniProt →
Function. Protein phosphatase that associates with over 200 regulatory proteins to form highly specific holoenzymes which dephosphorylate hundreds of biological targets. Protein phosphatase (PP1) is essential for cell division, it participates in the regulation of glycogen metabolism, muscle contractility and protein synthesis. Involved in regulation of ionic conductances and long-term synaptic plasticity. Component of the PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase. In balance with CSNK1D and CSNK1E, determines the circadian period length, through the regulation of the speed and rhythmicity of PER1 and PER2 phosphorylation. May dephosphorylate CSNK1D and CSNK1E. Dephosphorylates the ‘Ser-418’ residue of FOXP3 in regulatory T-cells (Treg) from patients with rheumatoid arthritis, thereby inactivating FOXP3 and rendering Treg cells functionally defective. Core component of the SHOC2-MRAS-PP1c (SMP) holophosphatase complex that regulates the MAPK pathway activation. The SMP complex specifically dephosphorylates the inhibitory phosphorylation at ‘Ser-259’ of RAF1 kinase, ‘Ser-365’ of BRAF kinase and ‘Ser-214’ of ARAF kinase, stimulating their kinase activities. The SMP complex enhances the dephosphorylation activity and substrate specificity of PP1c.
Subunit / interactions. PP1 comprises a catalytic subunit, PPP1CA, PPP1CB or PPP1CC, which is folded into its native form by inhibitor 2 and glycogen synthetase kinase 3, and then complexed to one or several targeting or regulatory subunits. The targeting or regulatory subunits determine the substrate specificity of PP1. PPP1R12A, PPP1R12B and PPP1R12C mediate binding to myosin. PPP1R3A (in skeletal muscle), PPP1R3B (in liver), PPP1R3C, PPP1R3D and PPP1R3F (in brain) mediate binding to glycogen. Part of a complex containing PPP1R15B, PP1 and NCK1/2. Interacts with PPP1R7 and PPP1R12C. PPP1R15A and PPP1R15B mediate binding to EIF2S1. Interacts with PPP1R16B. Component of the PTW/PP1 phosphatase complex, composed of PPP1R10/PNUTS, TOX4, WDR82, and PPP1CA or PPP1CB or PPP1CC. Interacts with PPP1R8. Interacts with TRIM28; the interaction is weak. Interacts with PPP1R12A and NUAK1; the interaction is direct. Interacts with FOXP3. Interacts with RRP1B. Interacts with SERPINE1. Interacts with LZTR1. Component of the SHOC2-MRAS-PP1c (SMP) complex consisting of SHOC2, GTP-bound M-Ras/MRAS and the catalytic subunit of protein phosphatase 1 (either PPP1CA, PPP1CB or PPP1CC). SHOC2 and PP1c preferably bind M-Ras/MRAS, but they also bind K-Ras/KRAS, N-Ras/NRAS and H-Ras/HRAS; these interactions are GTP-dependent and both SHOC2 and PP1c are required to form a stable complex. Interacts with SHOC2 in the absence of Ras GTPases.
Subcellular location. Cytoplasm. Nucleus. Nucleoplasm. Nucleolus.
Disease relevance. Noonan syndrome-like disorder with loose anagen hair 2 (NSLH2) [MIM:617506] A syndrome characterized by Noonan dysmorphic features such as macrocephaly, high forehead, hypertelorism, palpebral ptosis, low-set and posteriorly rotated ears, short and webbed neck, pectus anomalies, in association with pluckable, sparse, thin and slow-growing hair. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Inhibited by the toxins okadaic acid, tautomycin and microcystin Leu-Arg. The phosphatase activity of the PPP1R15A-PP1 complex toward EIF2S1 is specifically inhibited by Salubrinal, a drug that protects cells from endoplasmic reticulum stress.
Cofactor. Binds 2 manganese ions per subunit.
Induction. Up-regulated in synovial fluid mononuclear cells and peripheral blood mononuclear cells from patients with rheumatoid arthritis.
Similarity. Belongs to the PPP phosphatase family. PP-1 subfamily.
RefSeq proteins (2): NP_002700, NP_996759 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004843 | Calcineurin-like_PHP | Domain |
| IPR006186 | Ser/Thr-sp_prot-phosphatase | Domain |
| IPR029052 | Metallo-depent_PP-like | Homologous_superfamily |
| IPR031675 | STPPase_N | Domain |
| IPR050341 | PP1_catalytic_subunit | Family |
Pfam: PF00149, PF16891
Enzyme classification (BRENDA):
- EC 3.1.3.16 — protein-serine/threonine phosphatase (BRENDA: 92 organisms, 641 substrates, 468 inhibitors, 127 Km, 67 kcat entries)
Substrate kinetics (BRENDA)
59 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| 6,8-DIFLUORO-4-METHYLUMBELLIFERYL PHOSPHATE | 0.023–0.862 | 22 |
| 4-NITROPHENYL PHOSPHATE | 0.0028–12.7 | 13 |
| P-NITROPHENYL PHOSPHATE | 3–200 | 11 |
| RRAPTVA | 0.058–1.954 | 4 |
| PHOSPHOCASEIN | 0.0001–0.002 | 3 |
| PHOSPHOHISTONE | 0.0023–0.0723 | 3 |
| PHOSPHORYLATED MYOSIN LIGHT CHAIN PEPTIDE | 0.01–0.11 | 3 |
| PHOSPHOSERINE-MYELIN BASIC PROTEIN | 0.0004–0.022 | 3 |
| DLDVPIPGRFDRRVSVAAE | 0.0006–0.0138 | 2 |
| DLDVPIPGRFDRRVY(P)VAAE | 0.0025–0.023 | 2 |
| PHOSPHORYLASE A | 0.004–0.021 | 2 |
| RRA(PT)VA | 0.0536–0.308 | 2 |
| 80S-RIBOSOME | 0.0027 | 1 |
| AAAPTVA | 0.206 | 1 |
| AGPALSPVPPV | 0.357 | 1 |
Catalyzed reactions (Rhea), 4 shown:
- O-phospho-L-seryl-[myosin light chain] + H2O = L-seryl-[myosin light chain] + phosphate (RHEA:12849)
- O-phospho-L-seryl-[protein] + H2O = L-seryl-[protein] + phosphate (RHEA:20629)
- O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate (RHEA:47004)
- O-phospho-L-threonyl-[myosin light chain] + H2O = L-threonyl-[myosin light chain] + phosphate (RHEA:53988)
UniProt features (20 total): binding site 7, sequence variant 6, modified residue 2, initiator methionine 1, chain 1, sequence conflict 1, region of interest 1, active site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P62140-F1 | 91.91 | 0.87 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 124 (proton donor)
Ligand- & substrate-binding residues (7): 247; 63; 65; 91; 91; 123; 172
Post-translational modifications (2): 2, 316
Function
Pathways and Gene Ontology
Reactome pathways
13 pathways
| ID | Pathway |
|---|---|
| R-HSA-163560 | Triglyceride catabolism |
| R-HSA-2173788 | Downregulation of TGF-beta receptor signaling |
| R-HSA-2565942 | Regulation of PLK1 Activity at G2/M Transition |
| R-HSA-5625740 | RHO GTPases activate PKNs |
| R-HSA-5625900 | RHO GTPases activate CIT |
| R-HSA-5627117 | RHO GTPases Activate ROCKs |
| R-HSA-5627123 | RHO GTPases activate PAKs |
| R-HSA-5673000 | RAF activation |
| R-HSA-9726840 | SHOC2 M1731 mutant abolishes MRAS complex function |
| R-HSA-9726842 | Gain-of-function MRAS complexes activate RAF signaling |
| R-HSA-9770562 | mRNA Polyadenylation |
| R-HSA-9828806 | Maturation of hRSV A proteins |
| R-HSA-9931530 | Phosphorylation and nuclear translocation of the CRY:PER:kinase complex |
MSigDB gene sets: 522 (showing top):
GOBP_CIRCADIAN_RHYTHM, REACTOME_TRIGLYCERIDE_CATABOLISM, BERENJENO_ROCK_SIGNALING_NOT_VIA_RHOA_DN, MOOTHA_GLYCOGEN_METABOLISM, REACTOME_SIGNALING_BY_TGF_BETA_RECEPTOR_COMPLEX, HNF3ALPHA_Q6, MODULE_255, GOBP_PHOTOPERIODISM, TTTGTAG_MIR520D, YANG_BREAST_CANCER_ESR1_LASER_DN, GOBP_REGULATION_OF_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION, TGACCTY_ERR1_Q2, GOBP_CIRCADIAN_REGULATION_OF_GENE_EXPRESSION, HNF1_Q6, FOXO1_01
GO Biological Process (9): MAPK cascade (GO:0000165), glycogen metabolic process (GO:0005977), protein dephosphorylation (GO:0006470), regulation of cell adhesion (GO:0030155), circadian regulation of gene expression (GO:0032922), regulation of circadian rhythm (GO:0042752), entrainment of circadian clock by photoperiod (GO:0043153), cell division (GO:0051301), rhythmic process (GO:0048511)
GO Molecular Function (9): protein serine/threonine phosphatase activity (GO:0004722), phosphatase activity (GO:0016791), myosin phosphatase activity (GO:0017018), protein kinase binding (GO:0019901), metal ion binding (GO:0046872), myosin-light-chain-phosphatase activity (GO:0050115), phosphoprotein phosphatase activity (GO:0004721), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (9): nucleus (GO:0005634), nucleoplasm (GO:0005654), nucleolus (GO:0005730), cytoplasm (GO:0005737), cytosol (GO:0005829), focal adhesion (GO:0005925), extracellular exosome (GO:0070062), PTW/PP1 phosphatase complex (GO:0072357), chromosome, telomeric region (GO:0000781)
Reactome top-level categories
Rollup of top-9 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase Effectors | 4 |
| Signaling by MRAS-complex mutants | 2 |
| Triglyceride metabolism | 1 |
| TGF-beta receptor signaling activates SMADs | 1 |
| G2/M Transition | 1 |
| RAF/MAP kinase cascade | 1 |
| mRNA 3’-end processing | 1 |
| Respiratory syncytial virus (RSV) genome replication, transcription and translation | 1 |
| Circadian clock | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| circadian rhythm | 2 |
| phosphoprotein phosphatase activity | 2 |
| nuclear lumen | 2 |
| intracellular signaling cassette | 1 |
| energy reserve metabolic process | 1 |
| glucan metabolic process | 1 |
| dephosphorylation | 1 |
| protein modification process | 1 |
| cell adhesion | 1 |
| regulation of cellular process | 1 |
| regulation of gene expression | 1 |
| regulation of biological process | 1 |
| photoperiodism | 1 |
| entrainment of circadian clock | 1 |
| cellular process | 1 |
| biological_process | 1 |
| phosphoric ester hydrolase activity | 1 |
| protein serine/threonine phosphatase activity | 1 |
| kinase binding | 1 |
| cation binding | 1 |
| phosphatase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| binding | 1 |
| catalytic activity | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular membraneless organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| cell-substrate junction | 1 |
| extracellular vesicle | 1 |
| protein phosphatase type 1 complex | 1 |
| chromosomal region | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
332 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PPP1CB | SH2D4A | psi-mi:“MI:0915”(physical association) | 0.960 |
| SH2D4A | PPP1CB | psi-mi:“MI:0915”(physical association) | 0.960 |
| PPP1CB | PPP1R7 | psi-mi:“MI:0915”(physical association) | 0.930 |
| PPP1R11 | PPP1CB | psi-mi:“MI:0915”(physical association) | 0.920 |
| PPP1R16A | PPP1CB | psi-mi:“MI:0915”(physical association) | 0.830 |
| PPP1CB | PPP1R16A | psi-mi:“MI:0915”(physical association) | 0.830 |
| PPP1CB | PPP1R16B | psi-mi:“MI:0915”(physical association) | 0.790 |
| PPP1R16B | PPP1CB | psi-mi:“MI:0915”(physical association) | 0.790 |
| PPP1CB | PPP1R3C | psi-mi:“MI:0915”(physical association) | 0.780 |
| PPP1R3C | PPP1CB | psi-mi:“MI:0915”(physical association) | 0.780 |
| PPP1CB | CCDC85C | psi-mi:“MI:0914”(association) | 0.750 |
| PPP1CB | CCDC85C | psi-mi:“MI:2364”(proximity) | 0.750 |
| CSRNP2 | PPP1CB | psi-mi:“MI:0915”(physical association) | 0.740 |
| PPP1CB | CSRNP2 | psi-mi:“MI:0915”(physical association) | 0.740 |
| PPP1CB | PPP1R2B | psi-mi:“MI:0915”(physical association) | 0.720 |
BioGRID (712): PPP1R3C (Two-hybrid), TP53BP2 (Two-hybrid), SH2D4A (Two-hybrid), CSRNP2 (Two-hybrid), PPP1R16A (Two-hybrid), PPP1R2P3 (Two-hybrid), PPP1CB (Affinity Capture-MS), AKT1 (Affinity Capture-Western), PPP1CB (Affinity Capture-Western), PPP1CB (Affinity Capture-MS), PPP1CB (Affinity Capture-MS), PPP1CB (Two-hybrid), PPP1CB (Two-hybrid), PPP1CB (Two-hybrid), RORC (Two-hybrid)
ESM2 similar proteins: A2YEB4, A3C4N5, O00743, O02658, O04856, O04857, O04860, O04951, P0C5D7, P20604, P23696, P23778, P36614, P36874, P48462, P48481, P48482, P48485, P48486, P48487, P48529, P48578, P48580, P61292, P62140, P62141, P62142, P62143, P62207, P91420, Q06009, Q07098, Q07099, Q07100, Q0DBD3, Q27497, Q3SWW9, Q5I085, Q5R740, Q61JR3
Diamond homologs: A0C1E4, A0CCD2, A6H772, A8XE00, A9JRC7, B0XUR7, G5EGK8, O02658, O04856, O04857, O04858, O15757, O76932, O82733, O82734, P11084, P11493, P11611, P11612, P12982, P13681, P20654, P22198, P23696, P23733, P23734, P23777, P23880, P26570, P30366, P32598, P32945, P33329, P36873, P36874, P48458, P48459, P48461, P48462, P48463
SIGNOR signaling
18 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PPP1CB | up-regulates | NF2 | dephosphorylation |
| PPP1CB | down-regulates | AKT1 | dephosphorylation |
| PPP1CB | up-regulates | IKZF1 | dephosphorylation |
| PPP1CB | “down-regulates activity” | AXIN1 | dephosphorylation |
| PPP1CB | “down-regulates activity” | TP53 | dephosphorylation |
| PPP1CB | “up-regulates activity” | NOS3 | dephosphorylation |
| PPP1CB | “down-regulates activity” | AKT | dephosphorylation |
| PPP1CB | “up-regulates quantity by stabilization” | MDM2 | dephosphorylation |
| PPP1CB | “down-regulates activity” | AKT1 | dephosphorylation |
| PPP1R1B | “down-regulates activity” | PPP1CB | binding |
| PPP1CB | unknown | AHCYL1 | dephosphorylation |
| PPP1CB | “up-regulates activity” | CASP2 | dephosphorylation |
| PPP1R14A | “down-regulates activity” | PPP1CB | binding |
| PPP1R14B | “down-regulates activity” | PPP1CB | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 118 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Mitotic G1 phase and G1/S transition | 5 | 15.3× | 6e-04 |
| MITF-M-dependent gene expression | 5 | 15.1× | 6e-04 |
| EML4 and NUDC in mitotic spindle formation | 8 | 12.4× | 2e-05 |
| Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal | 6 | 11.7× | 4e-04 |
| Resolution of Sister Chromatid Cohesion | 8 | 11.5× | 3e-05 |
| RHO GTPase Effectors | 10 | 11.3× | 4e-06 |
| Regulation of TP53 Activity | 5 | 11.1× | 2e-03 |
| RHO GTPases Activate Formins | 8 | 10.4× | 5e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| glycogen metabolic process | 5 | 27.4× | 7e-04 |
| G1/S transition of mitotic cell cycle | 6 | 12.5× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
366 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 4 |
| Likely pathogenic | 8 |
| Uncertain significance | 95 |
| Likely benign | 220 |
| Benign | 18 |
Top pathogenic / likely-pathogenic (12)
| Variant ID | HGVS | Classification |
|---|---|---|
| 254648 | NM_002709.3(PPP1CB):c.146C>G (p.Pro49Arg) | Pathogenic |
| 254651 | NM_002709.3(PPP1CB):c.548A>T (p.Glu183Val) | Pathogenic |
| 254652 | NM_002709.3(PPP1CB):c.548A>C (p.Glu183Ala) | Pathogenic |
| 4282429 | NM_002709.3(PPP1CB):c.569G>A (p.Arg190Lys) | Pathogenic |
| 1727054 | NM_002709.3(PPP1CB):c.493G>C (p.Asp165His) | Likely pathogenic |
| 2231503 | NM_002709.3(PPP1CB):c.755A>G (p.Asp252Gly) | Likely pathogenic |
| 254649 | NM_002709.3(PPP1CB):c.754G>T (p.Asp252Tyr) | Likely pathogenic |
| 254653 | NM_002709.3(PPP1CB):c.820G>A (p.Glu274Lys) | Likely pathogenic |
| 3256555 | NM_002709.3(PPP1CB):c.493G>A (p.Asp165Asn) | Likely pathogenic |
| 4075297 | NM_002709.3(PPP1CB):c.515A>G (p.His172Arg) | Likely pathogenic |
| 427633 | NM_002709.3(PPP1CB):c.166G>C (p.Ala56Pro) | Likely pathogenic |
| 546861 | NM_002709.3(PPP1CB):c.255C>A (p.Asn85Lys) | Likely pathogenic |
SpliceAI
1533 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:28751857:G:GT | donor_gain | 1.0000 |
| 2:28752172:GGAGG:G | donor_gain | 1.0000 |
| 2:28752173:GAGG:G | donor_gain | 1.0000 |
| 2:28752173:GAGGG:G | donor_gain | 1.0000 |
| 2:28752175:GG:G | donor_gain | 1.0000 |
| 2:28752176:GG:G | donor_gain | 1.0000 |
| 2:28752177:G:A | donor_loss | 1.0000 |
| 2:28752178:T:G | donor_loss | 1.0000 |
| 2:28776841:C:A | acceptor_gain | 1.0000 |
| 2:28776845:T:TA | acceptor_gain | 1.0000 |
| 2:28776846:GTCA:G | acceptor_loss | 1.0000 |
| 2:28776848:CAG:C | acceptor_loss | 1.0000 |
| 2:28776849:A:AG | acceptor_gain | 1.0000 |
| 2:28776849:A:AT | acceptor_loss | 1.0000 |
| 2:28776849:AGTAC:A | acceptor_gain | 1.0000 |
| 2:28776850:G:GT | acceptor_gain | 1.0000 |
| 2:28776850:GT:G | acceptor_gain | 1.0000 |
| 2:28776850:GTA:G | acceptor_gain | 1.0000 |
| 2:28776850:GTAC:G | acceptor_gain | 1.0000 |
| 2:28776850:GTACG:G | acceptor_gain | 1.0000 |
| 2:28776852:ACGAG:A | acceptor_gain | 1.0000 |
| 2:28776961:G:GT | donor_gain | 1.0000 |
| 2:28776980:GTG:G | donor_gain | 1.0000 |
| 2:28776983:G:C | donor_loss | 1.0000 |
| 2:28776983:G:GG | donor_gain | 1.0000 |
| 2:28776984:T:A | donor_loss | 1.0000 |
| 2:28778803:TTTTA:T | acceptor_loss | 1.0000 |
| 2:28778804:TTTAG:T | acceptor_loss | 1.0000 |
| 2:28778805:TTAG:T | acceptor_loss | 1.0000 |
| 2:28778808:G:GT | acceptor_loss | 1.0000 |
AlphaMissense
2136 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:28776982:G:A | G62R | 1.000 |
| 2:28776982:G:C | G62R | 1.000 |
| 2:28778809:G:A | G62E | 1.000 |
| 2:28778809:G:T | G62V | 1.000 |
| 2:28778811:G:C | D63H | 1.000 |
| 2:28778812:A:C | D63A | 1.000 |
| 2:28778812:A:G | D63G | 1.000 |
| 2:28778812:A:T | D63V | 1.000 |
| 2:28778813:T:A | D63E | 1.000 |
| 2:28778813:T:G | D63E | 1.000 |
| 2:28778817:C:A | H65N | 1.000 |
| 2:28778817:C:G | H65D | 1.000 |
| 2:28778819:T:A | H65Q | 1.000 |
| 2:28778819:T:G | H65Q | 1.000 |
| 2:28778820:G:A | G66R | 1.000 |
| 2:28778820:G:C | G66R | 1.000 |
| 2:28778821:G:A | G66E | 1.000 |
| 2:28778821:G:T | G66V | 1.000 |
| 2:28778884:T:A | L87H | 1.000 |
| 2:28778884:T:C | L87P | 1.000 |
| 2:28778892:G:A | G90R | 1.000 |
| 2:28778892:G:C | G90R | 1.000 |
| 2:28778893:G:A | G90E | 1.000 |
| 2:28778893:G:T | G90V | 1.000 |
| 2:28778895:G:C | D91H | 1.000 |
| 2:28778896:A:C | D91A | 1.000 |
| 2:28778896:A:G | D91G | 1.000 |
| 2:28778896:A:T | D91V | 1.000 |
| 2:28778897:T:A | D91E | 1.000 |
| 2:28778897:T:G | D91E | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000022162 (2:28773012 A>G), RS1000087650 (2:28766834 C>A), RS1000112033 (2:28788158 T>TG), RS1000190200 (2:28760743 A>G), RS1000193450 (2:28771119 T>A,G), RS1000219865 (2:28760974 C>T), RS1000283818 (2:28800443 G>A), RS1000335883 (2:28793566 A>C,T), RS1000374327 (2:28754573 CA>C), RS1000411380 (2:28760042 C>A), RS1000459962 (2:28766651 T>A), RS1000478203 (2:28749659 T>C,G), RS1000511063 (2:28750008 A>G), RS1000547592 (2:28787874 C>G,T), RS1000644011 (2:28783088 C>A)
Disease associations
OMIM: gene MIM:600590 | disease phenotypes: MIM:617506, MIM:220200, MIM:163950, MIM:607721
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Noonan syndrome-like disorder with loose anagen hair | Definitive | Autosomal dominant |
| Noonan syndrome-like disorder with loose anagen hair 2 | Definitive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Noonan syndrome-like disorder with loose anagen hair | Definitive | AD |
Mondo (6): Noonan syndrome-like disorder with loose anagen hair 2 (MONDO:0054588), Dandy-Walker syndrome (MONDO:0009072), Noonan syndrome (MONDO:0018997), RASopathy (MONDO:0021060), Noonan syndrome-like disorder with loose anagen hair (MONDO:0011899), intellectual disability (MONDO:0001071)
Orphanet (5): Isolated Dandy-Walker malformation (Orphanet:217), RASopathy (Orphanet:536391), Noonan syndrome (Orphanet:648), Noonan syndrome-like disorder with loose anagen hair (Orphanet:2701), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
99 total (30 of 99 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000174 | Abnormal palate morphology |
| HP:0000179 | Thick lower lip vermilion |
| HP:0000193 | Bifid uvula |
| HP:0000207 | Triangular mouth |
| HP:0000218 | High palate |
| HP:0000219 | Thin upper lip vermilion |
| HP:0000233 | Thin vermilion border |
| HP:0000238 | Hydrocephalus |
| HP:0000256 | Macrocephaly |
| HP:0000286 | Epicanthus |
| HP:0000316 | Hypertelorism |
| HP:0000319 | Smooth philtrum |
| HP:0000329 | Facial hemangioma |
| HP:0000341 | Narrow forehead |
| HP:0000343 | Long philtrum |
| HP:0000348 | High forehead |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000365 | Hearing impairment |
| HP:0000369 | Low-set ears |
| HP:0000391 | Thickened helices |
| HP:0000396 | Overfolded helix |
| HP:0000400 | Macrotia |
| HP:0000430 | Underdeveloped nasal alae |
| HP:0000445 | Wide nose |
| HP:0000463 | Anteverted nares |
| HP:0000465 | Webbed neck |
| HP:0000470 | Short neck |
| HP:0000475 | Broad neck |
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002783_312 | Body mass index | 9.000000e-07 |
| GCST006090_1 | Excessive sweating | 2.000000e-11 |
| GCST006288_419 | Heel bone mineral density | 4.000000e-08 |
| GCST006288_569 | Heel bone mineral density | 1.000000e-11 |
| GCST006979_916 | Heel bone mineral density | 1.000000e-21 |
| GCST007656_7 | Chronic obstructive pulmonary disease or resting heart rate (pleiotropy) | 9.000000e-12 |
| GCST008523_1 | Pure non-grapefruit juice consumption | 2.000000e-07 |
| GCST008758_32 | Pre-treatment viral load in HIV-1 infection | 4.000000e-19 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0009270 | heel bone mineral density |
| EFO:0010095 | non-grapefruit juice consumption measurement |
| EFO:0010125 | viral load |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D003616 | Dandy-Walker Syndrome | C10.228.140.252.300; C10.228.140.602.500; C10.500.205; C16.131.666.205 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D009634 | Noonan Syndrome | C05.660.207.690; C14.240.400.787; C14.280.400.787; C16.131.240.400.784; C16.131.621.207.690; C17.300.690 |
| C564342 | Noonan-Like Syndrome With Loose Anagen Hair (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4546 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
70 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Arsenic Trioxide | decreases expression, increases expression | 3 |
| Valproic Acid | decreases methylation, affects expression, decreases expression | 3 |
| bisphenol A | increases expression, affects cotreatment | 2 |
| Air Pollutants | decreases expression, increases abundance | 2 |
| Benzene | increases expression | 2 |
| Rotenone | decreases expression, increases expression | 2 |
| Smoke | increases abundance, decreases expression | 2 |
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| Cadmium Chloride | increases abundance, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance | 2 |
| aristolochic acid I | increases expression, decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| moringin | decreases expression | 1 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| oxybenzone | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, decreases expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| tamibarotene | decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| deguelin | increases expression | 1 |
| 4-chloro-N-((4-(1,1-dimethylethyl)phenyl)methyl)-3-ethyl-1-methyl-1H-pyrazole-5-carboxamide | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| pyrimidifen | increases expression | 1 |
| nutlin 3 | increases secretion, affects cotreatment | 1 |
| bisphenol B | increases expression | 1 |
ChEMBL screening assays
9 unique, capped per target: 9 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4221651 | Binding | Binding affinity to full length recombinant human N-terminal His6-tagged PP1cdelta expressed in Escherichia coli M15 assessed as inhibition of protein interaction with GST-tagged MYPT1 at 10 to 50 uM by surface plasmon resonance method | Aralkyl selenoglycosides and related selenosugars in acetylated form activate protein phosphatase-1 and -2A. — Bioorg Med Chem |
Clinical trials (associated diseases)
228 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT00452725 | PHASE3 | COMPLETED | Effect of MAXOMAT ® on the Growth of Small Children to NOONAN’s Syndrome |
| NCT01529840 | PHASE3 | COMPLETED | Somatropin Effect on Linear Growth and Final Height in Subjects With Noonan Syndrome |
| NCT01529944 | PHASE3 | COMPLETED | Genetic Testing of Noonan Subjects Previously Treated With Norditropin®. An Extension to Trial GHNOO-1658 |
| NCT01927861 | PHASE3 | COMPLETED | Investigating the Long-term Efficacy and Safety of Two Doses of NN-220 (Somatropin) in Short Stature Due to Noonan Syndrome |
| NCT02713945 | PHASE3 | COMPLETED | Treatment With HMG-COA Reductase Inhibitor of Growth and Bone Abnormalities in Children With Noonan Syndrome |
| NCT05723835 | PHASE3 | ACTIVE_NOT_RECRUITING | A Research Study Looking at How Safe Somapacitan is and How Well it Works in Children Who Need Help to Grow - REAL 9 |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT00351221 | PHASE2 | TERMINATED | Research Study Using Recombinant Human Insulin-Like Growth Factor-1/Recombinant Human Insulin-Like Growth Factor Binding Protein-3 for Children With Noonan Syndrome |
| NCT06555237 | PHASE2 | RECRUITING | MEK Inhibitors for the Treatment of Hypertrophic Cardiomyopathy in Patients With RASopathies |
| NCT06668805 | PHASE2 | RECRUITING | A Study of Vosoritide in Children With Noonan Syndrome With Inadequate Growth During or After Human Growth Hormone Treatment |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT00960128 | Not specified | COMPLETED | Observational Prospective Study on Patients Treated With Norditropin® |
| NCT02486731 | Not specified | COMPLETED | Hormonal Sensitivity in Patients With Noonan and LEOPARD Syndromes |
| NCT03435627 | Not specified | COMPLETED | Post Marketing Surveillance on Long-term Use With Norditropin® (Short Stature Due to Noonan Syndrome) |
| NCT04395495 | Not specified | RECRUITING | RASopathy Biorepository |
| NCT04463316 | Not specified | RECRUITING | GROWing Up With Rare GENEtic Syndromes |
| NCT04888936 | Not specified | RECRUITING | Clinical, Genetic, and Epidemiologic Study of Children and Adults With RASopathies |
| NCT05202210 | Not specified | RECRUITING | Constitution of a Biological Collection to Study the Pathophysiology in Noonan Syndrome |
| NCT05308927 | Not specified | ENROLLING_BY_INVITATION | French Registry of Children Treated With Norditropin® for Short Stature Associated With Noonan Syndrome |
| NCT05361811 | Not specified | RECRUITING | Acceptance and Commitment Therapy for Caregivers of Children With a RASopathy: An Internal Pilot Feasibility Study and Follow-up Randomized Controlled Trial |
| NCT05761314 | Not specified | RECRUITING | Solid Tumors in RASopathies |
| NCT06267807 | Not specified | COMPLETED | Lymphatic Phenotype in Noonan Syndrome Spectrum Disorders |
| NCT06331117 | Not specified | UNKNOWN | Effect of RAS/MAPK Pathway Hyperactivation on Growth’ and Bone’ Profile of the RASopathies |
| NCT06355622 | Not specified | UNKNOWN | Prevalence and Characterization of Pain in RASopathies |
| NCT06550635 | Not specified | COMPLETED | Joint and Hematologic Disorders of Noonan Syndrome: French Descriptive Cross-sectional Study |
| NCT06938542 | Not specified | ENROLLING_BY_INVITATION | Palliative Care Needs of Children With Rare Diseases and Their Families |
| NCT07259135 | Not specified | NOT_YET_RECRUITING | Link Between Abnormal Bleeding and Coagulation Disorders in Noonan Syndromes |
| NCT07336394 | Not specified | RECRUITING | Precision Diagnosis and Risk Stratification of Rare Cardiomyopathies Based on Novel Cardiac Magnetic Resonance Techniques |
Related Atlas pages
- Associated diseases: Noonan syndrome-like disorder with loose anagen hair, Noonan syndrome-like disorder with loose anagen hair 2
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Dandy-Walker syndrome, Noonan syndrome, Noonan syndrome-like disorder with loose anagen hair, Noonan syndrome-like disorder with loose anagen hair 2, RASopathy