PPP1R9A-AS1

Summary

PPP1R9A-AS1 (PPP1R9A antisense RNA 1, HGNC:40696) is a long non-coding RNA gene on chromosome 7q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40696
Approved symbol	PPP1R9A-AS1
Name	PPP1R9A antisense RNA 1
Location	7q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236197
Ensembl biotype	lncRNA
Entrez	105375405
RNAcentral	URS00026A258D — lncRNA, 1238 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000417881, ENST00000637269, ENST00000637876, ENST00000653140, ENST00000666346, ENST00000702997, ENST00000731711, ENST00000731712, ENST00000731713, ENST00000731714

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417881 — 4 exons

Exon	Start	End
ENSE00001639492	95174947	95175089
ENSE00001643332	95154713	95156951
ENSE00002467667	95176493	95176531
ENSE00003818440	95214185	95214332

Expression profiles

Bgee: expression breadth ubiquitous, 117 present calls, max score 80.48.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3202 / max 32.4519, expressed in 79 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
84944	0.1986	75
84943	0.0745	43
84942	0.0472	33

Top tissues by expression

117 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.48	gold quality
nucleus accumbens	UBERON:0001882	76.45	gold quality
tonsil	UBERON:0002372	74.87	gold quality
corpus callosum	UBERON:0002336	74.65	gold quality
amygdala	UBERON:0001876	74.00	gold quality
temporal lobe	UBERON:0001871	73.90	gold quality
colonic epithelium	UBERON:0000397	73.83	gold quality
caudate nucleus	UBERON:0001873	73.62	gold quality
skeletal muscle tissue	UBERON:0001134	70.81	gold quality
anterior cingulate cortex	UBERON:0009835	70.51	gold quality
putamen	UBERON:0001874	70.32	gold quality
adrenal tissue	UBERON:0018303	69.91	gold quality
bone marrow cell	CL:0002092	69.20	silver quality
hypothalamus	UBERON:0001898	68.19	gold quality
Ammon’s horn	UBERON:0001954	67.57	gold quality
cerebral cortex	UBERON:0000956	66.37	gold quality
prefrontal cortex	UBERON:0000451	66.00	gold quality
substantia nigra	UBERON:0002038	65.78	gold quality
superior frontal gyrus	UBERON:0002661	65.56	gold quality
frontal cortex	UBERON:0001870	65.54	gold quality
brain	UBERON:0000955	65.47	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	65.24	gold quality
right frontal lobe	UBERON:0002810	64.73	gold quality
Brodmann (1909) area 9	UBERON:0013540	64.26	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.56	gold quality
primary visual cortex	UBERON:0002436	57.67	gold quality
lymph node	UBERON:0000029	55.01	gold quality
ganglionic eminence	UBERON:0004023	54.98	silver quality
bone marrow	UBERON:0002371	54.44	silver quality
sural nerve	UBERON:0015488	54.28	silver quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-HCAD-35	yes	69.61
E-HCAD-25	yes	23.56
E-ANND-3	no	4.15

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.