PPP4R3B-DT

Summary

PPP4R3B-DT (PPP4R3B divergent transcript, HGNC:55209) is a long non-coding RNA gene on chromosome 2p16.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55209
Approved symbol	PPP4R3B-DT
Name	PPP4R3B divergent transcript
Location	2p16.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272606
Ensembl biotype	lncRNA
Entrez	107985885
RNAcentral	URS00026A1B33 — lncRNA, 556 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000608113, ENST00000749892

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000608113 — 2 exons

Exon	Start	End
ENSE00004093825	55617635	55618444
ENSE00004093826	55616876	55617062

Expression profiles

Bgee: expression breadth ubiquitous, 177 present calls, max score 89.97.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.3517 / max 145.3806, expressed in 1475 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
20346	5.9447	1436
20345	0.3114	142
20347	0.0957	40

Top tissues by expression

250 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	89.97	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.39	gold quality
pancreatic ductal cell	CL:0002079	82.76	silver quality
endothelial cell	CL:0000115	82.05	gold quality
monocyte	CL:0000576	81.85	gold quality
leukocyte	CL:0000738	81.31	gold quality
granulocyte	CL:0000094	76.12	gold quality
thymus	UBERON:0002370	76.04	silver quality
right uterine tube	UBERON:0001302	73.95	gold quality
adenohypophysis	UBERON:0002196	73.85	gold quality
islet of Langerhans	UBERON:0000006	73.79	gold quality
pituitary gland	UBERON:0000007	73.77	gold quality
bone marrow cell	CL:0002092	73.68	gold quality
spleen	UBERON:0002106	73.36	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	73.19	gold quality
stromal cell of endometrium	CL:0002255	72.48	gold quality
left ovary	UBERON:0002119	72.17	gold quality
left lobe of thyroid gland	UBERON:0001120	71.83	gold quality
right lobe of thyroid gland	UBERON:0001119	71.59	gold quality
sural nerve	UBERON:0015488	71.52	gold quality
metanephros cortex	UBERON:0010533	71.46	gold quality
right lobe of liver	UBERON:0001114	71.43	gold quality
thyroid gland	UBERON:0002046	71.22	gold quality
mucosa of stomach	UBERON:0001199	70.90	gold quality
lymph node	UBERON:0000029	70.88	gold quality
right lung	UBERON:0002167	70.87	gold quality
popliteal artery	UBERON:0002250	70.50	gold quality
tibial artery	UBERON:0007610	70.48	gold quality
left adrenal gland cortex	UBERON:0035825	70.43	gold quality
tibial nerve	UBERON:0001323	70.29	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.