PRAP1
gene geneOn this page
Also known as UPA
Summary
PRAP1 (proline rich acidic protein 1, HGNC:23304) is a protein-coding gene on chromosome 10q26.3, encoding Proline-rich acidic protein 1 (Q96NZ9). Lipid-binding protein which promotes lipid absorption by facilitating MTTP-mediated lipid transfer (mainly triglycerides and phospholipids) and MTTP-mediated apoB lipoprotein assembly and secretion.
Predicted to enable triglyceride binding activity. Involved in DNA damage response, signal transduction by p53 class mediator; deactivation of mitotic spindle assembly checkpoint; and negative regulation of apoptotic process. Predicted to be located in endoplasmic reticulum and extracellular region.
Source: NCBI Gene 118471 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 28 total
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_145202
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:23304 |
| Approved symbol | PRAP1 |
| Name | proline rich acidic protein 1 |
| Location | 10q26.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | UPA |
| Ensembl gene | ENSG00000165828 |
| Ensembl biotype | protein_coding |
| OMIM | 609776 |
| Entrez | 118471 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 7 protein_coding
ENST00000433452, ENST00000463201, ENST00000863040, ENST00000863041, ENST00000863042, ENST00000863043, ENST00000863044
RefSeq mRNA: 2 — MANE Select: NM_145202
NM_001145201, NM_145202
CCDS: CCDS44498, CCDS7679
Canonical transcript exons
ENST00000433452 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001185450 | 133352247 | 133352683 |
| ENSE00001893257 | 133347373 | 133347425 |
| ENSE00003791960 | 133350095 | 133350161 |
| ENSE00003797617 | 133352007 | 133352140 |
| ENSE00003800860 | 133351381 | 133351433 |
Expression profiles
Bgee: expression breadth ubiquitous, 128 present calls, max score 99.70.
FANTOM5 (CAGE): breadth broad, TPM avg 4.8619 / max 1517.2837, expressed in 230 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 107791 | 4.0799 | 205 |
| 107790 | 0.7820 | 95 |
Top tissues by expression
133 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| duodenum | UBERON:0002114 | 99.70 | gold quality |
| right lobe of liver | UBERON:0001114 | 99.27 | gold quality |
| liver | UBERON:0002107 | 98.95 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 97.73 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 95.32 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 94.53 | gold quality |
| small intestine | UBERON:0002108 | 94.09 | gold quality |
| rectum | UBERON:0001052 | 89.10 | gold quality |
| transverse colon | UBERON:0001157 | 87.55 | gold quality |
| kidney | UBERON:0002113 | 87.12 | gold quality |
| right testis | UBERON:0004534 | 83.56 | gold quality |
| left testis | UBERON:0004533 | 82.50 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 82.23 | silver quality |
| testis | UBERON:0000473 | 81.63 | gold quality |
| tibial nerve | UBERON:0001323 | 81.52 | gold quality |
| intestine | UBERON:0000160 | 79.98 | gold quality |
| cortex of kidney | UBERON:0001225 | 77.16 | gold quality |
| colon | UBERON:0001155 | 74.85 | gold quality |
| metanephros cortex | UBERON:0010533 | 73.79 | gold quality |
| vermiform appendix | UBERON:0001154 | 69.90 | gold quality |
| gall bladder | UBERON:0002110 | 67.68 | gold quality |
| colonic epithelium | UBERON:0000397 | 64.83 | silver quality |
| monocyte | CL:0000576 | 64.30 | gold quality |
| right uterine tube | UBERON:0001302 | 63.78 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 63.60 | gold quality |
| mucosa of stomach | UBERON:0001199 | 63.42 | gold quality |
| leukocyte | CL:0000738 | 62.41 | gold quality |
| ovary | UBERON:0000992 | 61.08 | gold quality |
| granulocyte | CL:0000094 | 61.02 | gold quality |
| right ovary | UBERON:0002118 | 60.96 | gold quality |
Single-cell (SCXA)
Detected in 10 experiment(s), a significant marker in 8.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-125970 | yes | 12140.97 |
| E-CURD-46 | yes | 8356.12 |
| E-CURD-122 | yes | 3765.02 |
| E-MTAB-9906 | yes | 2259.23 |
| E-MTAB-8410 | yes | 1370.22 |
| E-CURD-98 | yes | 917.48 |
| E-HCAD-9 | yes | 55.94 |
| E-ANND-3 | yes | 24.04 |
| E-MTAB-3929 | no | 330.40 |
| E-MTAB-6379 | no | 1.34 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): TP53
miRNA regulators (miRDB)
8 targeting PRAP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-548AZ-5P | 99.83 | 69.94 | 3230 |
| HSA-MIR-548T-5P | 99.83 | 69.91 | 3220 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-6504-3P | 99.17 | 69.31 | 2891 |
| HSA-MIR-193B-5P | 97.91 | 65.88 | 837 |
| HSA-MIR-1234-3P | 86.70 | 58.45 | 109 |
| HSA-MIR-7107-5P | 86.70 | 59.28 | 110 |
Literature-anchored findings (GeneRIF, showing 4)
- Induction of PRAP1 expression by p53 in response to DNA-damaging agents contributes to cancer cell survival. (PMID:23235459)
- PRAP1 is a protein interacting partner of MAD1 and that PRAP1 is able to down-regulate MAD1 and suppress mitotic checkpoint signalling in hepatocellular carcinoma. (PMID:24374861)
- ATF3 and PRAP1 play important roles in cisplatin-induced DNA damage repair process. (PMID:29886035)
- Proline-Rich Acidic Protein 1 (PRAP1) Protects the Gastrointestinal Epithelium From Irradiation-Induced Apoptosis. (PMID:32629119)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Prap1 | ENSMUSG00000025467 |
| rattus_norvegicus | Prap1 | ENSRNOG00000018446 |
Protein
Protein identifiers
Proline-rich acidic protein 1 — Q96NZ9 (reviewed: Q96NZ9)
Alternative names: Epididymis tissue protein Li 178, Uterine-specific proline-rich acidic protein
All UniProt accessions (2): A6XND8, Q96NZ9
UniProt curated annotations — full annotation on UniProt →
Function. Lipid-binding protein which promotes lipid absorption by facilitating MTTP-mediated lipid transfer (mainly triglycerides and phospholipids) and MTTP-mediated apoB lipoprotein assembly and secretion. Protects the gastrointestinal epithelium from irradiation-induced apoptosis. May play an important role in maintaining normal growth homeostasis in epithelial cells. Involved in p53/TP53-dependent cell survival after DNA damage. May down-regulate the expression of MAD1L1 and exert a suppressive role in mitotic spindle assembly checkpoint in hepatocellular carcinomas.
Subunit / interactions. Interacts with isoform 1 and isoform 3 of MAD1L1. Interacts with MTTP.
Subcellular location. Secreted. Endoplasmic reticulum.
Tissue specificity. Highly expressed in the intestinal epithelial cells (at protein level). Abundantly expressed in the epithelial cells of the liver, kidney and cervix. Significantly down-regulated in hepatocellular carcinoma and right colon adenocarcinoma compared with the respective adjacent normal tissues. Expressed in epididymis (at protein level).
Induction. Up-regulated by butyrate, trichostatin A and 5’-aza-2’ deoxycytidine. Induced by DNA-damaging agents in a p53/TP53-dependent manner in HepG2 liver cancer cell line and HCT116 colon cancer cell line.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96NZ9-1 | 1, PRAP | yes |
| Q96NZ9-2 | 2 | |
| Q96NZ9-3 | 3, PRAPV1 | |
| Q96NZ9-4 | 4, PRAPV2 |
RefSeq proteins (2): NP_001138673, NP_660203* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR027922 | PRAP | Family |
Pfam: PF15314
UniProt features (10 total): sequence variant 4, splice variant 3, signal peptide 1, chain 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96NZ9-F1 | 61.73 | 0.02 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 138 (showing top):
GOBP_CHROMOSOME_ORGANIZATION, GOBP_DIGESTION, GOBP_POSITIVE_REGULATION_OF_MITOTIC_NUCLEAR_DIVISION, GOBP_REGULATION_OF_CELL_CYCLE_CHECKPOINT, GOBP_RESPONSE_TO_IONIZING_RADIATION, GOBP_REGULATION_OF_NUCLEAR_DIVISION, GOBP_CELL_CYCLE_PHASE_TRANSITION, GOBP_POSITIVE_REGULATION_OF_MITOTIC_CELL_CYCLE, GOBP_CHROMOSOME_SEPARATION, GOBP_POSITIVE_REGULATION_OF_DIGESTIVE_SYSTEM_PROCESS, GOBP_POSITIVE_REGULATION_OF_ORGANELLE_ORGANIZATION, GOBP_POSITIVE_REGULATION_OF_LIPID_TRANSPORT, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_ORGANOPHOSPHATE_ESTER_TRANSPORT
GO Biological Process (8): DNA damage response (GO:0006974), DNA damage response, signal transduction by p53 class mediator (GO:0030330), negative regulation of apoptotic process (GO:0043066), cellular response to X-ray (GO:0071481), deactivation of mitotic spindle assembly checkpoint (GO:1902426), positive regulation of intestinal lipid absorption (GO:1904731), positive regulation of triglyceride transport (GO:1905885), positive regulation of phospholipid transport (GO:2001140)
GO Molecular Function (3): triglyceride binding (GO:0017129), protein binding (GO:0005515), lipid binding (GO:0008289)
GO Cellular Component (2): extracellular region (GO:0005576), endoplasmic reticulum (GO:0005783)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| cellular response to stress | 1 |
| signal transduction in response to DNA damage | 1 |
| signal transduction by p53 class mediator | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| negative regulation of programmed cell death | 1 |
| response to X-ray | 1 |
| cellular response to ionizing radiation | 1 |
| negative regulation of mitotic spindle assembly checkpoint signaling | 1 |
| intestinal lipid absorption | 1 |
| positive regulation of intestinal absorption | 1 |
| regulation of intestinal lipid absorption | 1 |
| triglyceride transport | 1 |
| positive regulation of acylglycerol transport | 1 |
| regulation of triglyceride transport | 1 |
| phospholipid transport | 1 |
| positive regulation of lipid transport | 1 |
| regulation of phospholipid transport | 1 |
| lipid binding | 1 |
| cellular anatomical structure | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
340 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PRAP1 | FUOM | A2VDF0 | 480 |
| PRAP1 | RPP40 | O75818 | 471 |
| PRAP1 | TMEM184B | Q9Y519 | 459 |
| PRAP1 | LZTS3 | O60299 | 457 |
| PRAP1 | NPL | Q9BXD5 | 405 |
| PRAP1 | S4R460 | S4R460 | 402 |
| PRAP1 | RPL37A | P12751 | 401 |
| PRAP1 | DSC3 | Q14574 | 381 |
| PRAP1 | DSC2 | Q02487 | 375 |
| PRAP1 | HDC | P19113 | 374 |
| PRAP1 | DNPH1 | O43598 | 369 |
| PRAP1 | CCDC185 | Q8N715 | 355 |
| PRAP1 | TRNP1 | Q6NT89 | 335 |
| PRAP1 | ZNF511 | Q8NB15 | 321 |
| PRAP1 | TMEM54 | Q969K7 | 318 |
IntAct
51 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PRAP1 | SGTA | psi-mi:“MI:0915”(physical association) | 0.720 |
| UBQLN1 | PRAP1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| SGTA | PRAP1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| PRAP1 | UBQLN1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| PRAP1 | UBQLN1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ASPH | PRAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MEOX2 | PRAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PRAP1 | MRFAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PRAP1 | UBQLN2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SGTB | PRAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CEP19 | PRAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HSPA6 | PRAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| AHNAK2 | PRAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PRAP1 | CD48 | psi-mi:“MI:0914”(association) | 0.530 |
| PRAP1 | HSPA5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| MEP1B | PRAP1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PRAP1 | IGHA1 | psi-mi:“MI:0914”(association) | 0.350 |
| GRB2 | PRAP1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| PRAP1 | UBQLN2 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (25): PRAP1 (Two-hybrid), PRAP1 (Two-hybrid), LACRT (Affinity Capture-MS), CD48 (Affinity Capture-MS), IGHA1 (Affinity Capture-MS), UBQLN1 (Two-hybrid), CD48 (Affinity Capture-MS), LACRT (Affinity Capture-MS), LTF (Affinity Capture-MS), IGHA1 (Affinity Capture-MS), PRAP1 (Two-hybrid), PRAP1 (Two-hybrid), PRAP1 (Two-hybrid), HSPA6 (Two-hybrid), CEP19 (Two-hybrid)
ESM2 similar proteins: A0JPP4, A2VE23, A4FU49, A8MXV6, E9Q7D5, F1NSM7, P06484, P0C671, P0C7A2, P10636, P10637, P69280, P69282, P69284, P69287, Q0VC16, Q12774, Q196W1, Q1XI13, Q28139, Q2TA21, Q4R729, Q5SRN2, Q5STT6, Q5SWP3, Q5YCV9, Q5YCW1, Q62840, Q63003, Q66666, Q66H38, Q6MG22, Q6UXA7, Q6UXF1, Q71M36, Q8BHE4, Q8BM15, Q8K4L6, Q8N1P7, Q96KW9
Diamond homologs: Q80XD8, Q96NZ9, Q9ES75
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
28 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 24 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
516 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:133352238:T:TA | acceptor_gain | 1.0000 |
| 10:133352245:A:AG | acceptor_gain | 1.0000 |
| 10:133352245:A:T | acceptor_loss | 1.0000 |
| 10:133352245:AG:A | acceptor_gain | 1.0000 |
| 10:133352246:G:GA | acceptor_gain | 1.0000 |
| 10:133352246:GG:G | acceptor_gain | 1.0000 |
| 10:133352246:GGC:G | acceptor_gain | 1.0000 |
| 10:133352246:GGCA:G | acceptor_gain | 1.0000 |
| 10:133350090:CTCA:C | acceptor_loss | 0.9900 |
| 10:133350092:CA:C | acceptor_loss | 0.9900 |
| 10:133350093:A:AG | acceptor_gain | 0.9900 |
| 10:133350094:G:A | acceptor_loss | 0.9900 |
| 10:133350094:G:GG | acceptor_gain | 0.9900 |
| 10:133350094:GGCTC:G | acceptor_gain | 0.9900 |
| 10:133350157:CCAAG:C | donor_loss | 0.9900 |
| 10:133350158:CAAGG:C | donor_loss | 0.9900 |
| 10:133350159:AAG:A | donor_loss | 0.9900 |
| 10:133350161:GGTA:G | donor_loss | 0.9900 |
| 10:133350162:G:GA | donor_loss | 0.9900 |
| 10:133351431:GAA:G | donor_gain | 0.9900 |
| 10:133351434:G:GG | donor_gain | 0.9900 |
| 10:133352005:AG:A | acceptor_gain | 0.9900 |
| 10:133352006:GG:G | acceptor_gain | 0.9900 |
| 10:133352234:T:TA | acceptor_gain | 0.9900 |
| 10:133352246:GGCAC:G | acceptor_gain | 0.9900 |
| 10:133350093:AG:A | acceptor_gain | 0.9800 |
| 10:133350094:GG:G | acceptor_gain | 0.9800 |
| 10:133352001:CAGCA:C | acceptor_loss | 0.9800 |
| 10:133352004:CAGG:C | acceptor_loss | 0.9800 |
| 10:133352005:A:AG | acceptor_gain | 0.9800 |
AlphaMissense
981 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:133352417:G:C | D145H | 0.936 |
| 10:133352419:C:A | D145E | 0.934 |
| 10:133352419:C:G | D145E | 0.934 |
| 10:133352418:A:C | D145A | 0.932 |
| 10:133350111:A:C | S9R | 0.931 |
| 10:133350113:C:A | S9R | 0.931 |
| 10:133350113:C:G | S9R | 0.931 |
| 10:133352418:A:T | D145V | 0.924 |
| 10:133352411:G:C | D143H | 0.911 |
| 10:133352431:C:A | H149Q | 0.907 |
| 10:133352431:C:G | H149Q | 0.907 |
| 10:133352412:A:C | D143A | 0.904 |
| 10:133352413:C:A | D143E | 0.896 |
| 10:133352413:C:G | D143E | 0.896 |
| 10:133352429:C:G | H149D | 0.889 |
| 10:133352418:A:G | D145G | 0.867 |
| 10:133352313:A:T | D110V | 0.858 |
| 10:133352412:A:T | D143V | 0.852 |
| 10:133352314:C:A | D110E | 0.841 |
| 10:133352314:C:G | D110E | 0.841 |
| 10:133352326:C:A | H114Q | 0.841 |
| 10:133352326:C:G | H114Q | 0.841 |
| 10:133352407:G:C | E141D | 0.827 |
| 10:133352407:G:T | E141D | 0.827 |
| 10:133352399:G:A | G139R | 0.825 |
| 10:133352399:G:C | G139R | 0.825 |
| 10:133352313:A:C | D110A | 0.824 |
| 10:133352412:A:G | D143G | 0.817 |
| 10:133352324:C:G | H114D | 0.805 |
| 10:133352312:G:C | D110H | 0.795 |
dbSNP variants (sampled 300 via entrez): RS1000394913 (10:133350536 C>A), RS1000427476 (10:133350804 C>A,G,T), RS1001157769 (10:133345542 T>A), RS1001565324 (10:133350256 T>C), RS1001932617 (10:133349897 C>T), RS1003204110 (10:133348755 T>C), RS1003644616 (10:133348968 C>T), RS1005668422 (10:133348083 C>T), RS1005829653 (10:133353139 G>A,C), RS1006088770 (10:133347112 G>A), RS1006205892 (10:133352358 G>A,C), RS1007086286 (10:133346587 G>A,C,T), RS1007423177 (10:133352126 G>A,T), RS1007482678 (10:133346602 A>G), RS1007795975 (10:133351848 C>T)
Disease associations
OMIM: gene MIM:609776 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST007250_1 | Nonunion in individuals with fractures | 2.000000e-08 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009707 | fractures, ununited |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4879502 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 398 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL4098253 | AZD2461 | 1 | 398 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
6 potent at pChembl≥5 of 6 total, top 6 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.16 | IC50 | 6.87 | nM | CHEMBL4854774 |
| 8.15 | IC50 | 7.09 | nM | AZD2461 |
| 8.08 | IC50 | 8.35 | nM | CHEMBL4850135 |
| 7.87 | IC50 | 13.56 | nM | CHEMBL4856941 |
| 7.82 | IC50 | 15.28 | nM | CHEMBL4869660 |
| 7.72 | IC50 | 19.09 | nM | CHEMBL4849327 |
PubChem BioAssay actives
6 with measured affinity, of 6 total; 6 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 3-acetamido-N-[(4,6-dimethyl-2-oxo-1H-pyridin-3-yl)methyl]-5-[6-[4-[2-fluoro-5-[(4-oxo-3H-phthalazin-1-yl)methyl]benzoyl]piperazin-1-yl]-3-pyridinyl]-2-methylbenzamide | 1773629: Inhibition of PRAP1 (unknown origin) by HT universal chemiluminescent assay | ic50 | 0.0069 | uM |
| 4-[[4-fluoro-3-(4-methoxypiperidine-1-carbonyl)phenyl]methyl]-2H-phthalazin-1-one | 1773629: Inhibition of PRAP1 (unknown origin) by HT universal chemiluminescent assay | ic50 | 0.0071 | uM |
| N-[(4,6-dimethyl-2-oxo-1H-pyridin-3-yl)methyl]-5-[6-[4-[2-fluoro-5-[(4-oxo-3H-phthalazin-1-yl)methyl]benzoyl]piperazin-1-yl]-3-pyridinyl]-2-methyl-3-(propanoylamino)benzamide | 1773629: Inhibition of PRAP1 (unknown origin) by HT universal chemiluminescent assay | ic50 | 0.0083 | uM |
| N-[(4,6-dimethyl-2-oxo-1H-pyridin-3-yl)methyl]-3-[ethyl(propanoyl)amino]-5-[6-[4-[2-fluoro-5-[(4-oxo-3H-phthalazin-1-yl)methyl]benzoyl]piperazin-1-yl]-3-pyridinyl]-2-methylbenzamide | 1773629: Inhibition of PRAP1 (unknown origin) by HT universal chemiluminescent assay | ic50 | 0.0136 | uM |
| N-[(4,6-dimethyl-2-oxo-1H-pyridin-3-yl)methyl]-5-[6-[4-[2-fluoro-5-[(4-oxo-3H-phthalazin-1-yl)methyl]benzoyl]piperazin-1-yl]-3-pyridinyl]-2-methyl-3-(3-methylbutanoylamino)benzamide | 1773629: Inhibition of PRAP1 (unknown origin) by HT universal chemiluminescent assay | ic50 | 0.0153 | uM |
| N-[(4,6-dimethyl-2-oxo-1H-pyridin-3-yl)methyl]-3-[ethyl(2-methylprop-2-enoyl)amino]-5-[6-[4-[2-fluoro-5-[(4-oxo-3H-phthalazin-1-yl)methyl]benzoyl]piperazin-1-yl]-3-pyridinyl]-2-methylbenzamide | 1773629: Inhibition of PRAP1 (unknown origin) by HT universal chemiluminescent assay | ic50 | 0.0191 | uM |
CTD chemical–gene interactions
18 total (human), top 18 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases expression | 4 |
| Aflatoxin B1 | affects expression, decreases expression, increases expression | 3 |
| sodium arsenite | decreases expression, increases expression, decreases reaction, increases secretion | 2 |
| Valproic Acid | affects expression, decreases expression | 2 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| 2,4,5,2’,4’,5’-hexachlorobiphenyl | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| bisphenol S | affects methylation, affects cotreatment, decreases methylation | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| theaflavin-3,3’-digallate | affects expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Cisplatin | increases expression, affects cotreatment | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Quercetin | increases expression | 1 |
| Tetrachlorodibenzodioxin | increases expression | 1 |
| Cyclosporine | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4833010 | Binding | Inhibition of PRAP1 (unknown origin) by HT universal chemiluminescent assay | Discovery of First-in-Class Dual PARP and EZH2 Inhibitors for Triple-Negative Breast Cancer with Wild-Type BRCA. — J Med Chem |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2C1 | Abcam HeLa PRAP1 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.