PRCC
gene geneOn this page
Also known as RCCP1
Summary
PRCC (proline rich mitotic checkpoint control factor, HGNC:9343) is a protein-coding gene on chromosome 1q23.1, encoding Proline-rich protein PRCC (Q92733). May regulate cell cycle progression through interaction with MAD2L2. It is a selective cancer dependency (DepMap: 20.9% of cell lines).
This gene encodes a protein that may play a role in pre-mRNA splicing. Chromosomal translocations (X;1)(p11;q21) that result in fusion of this gene to TFE3 (GeneID 7030) have been associated with papillary renal cell carcinoma. A PRCC-TFE3 fusion protein is expressed in affected carcinomas and is likely associated with altered gene transactivation. This fusion protein has also been associated with disruption of the cell cycle.
Source: NCBI Gene 5546 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 82 total
- Phenotypes (HPO): 4
- Cancer dependency (DepMap): dependent in 20.9% of screened cell lines
- MANE Select transcript:
NM_005973
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:9343 |
| Approved symbol | PRCC |
| Name | proline rich mitotic checkpoint control factor |
| Location | 1q23.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RCCP1 |
| Ensembl gene | ENSG00000143294 |
| Ensembl biotype | protein_coding |
| OMIM | 179755 |
| Entrez | 5546 |
Gene structure
Transcript identifiers
Ensembl transcripts: 25 — 21 protein_coding, 2 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000271526, ENST00000454659, ENST00000459707, ENST00000469071, ENST00000473387, ENST00000491853, ENST00000526188, ENST00000888086, ENST00000888087, ENST00000888088, ENST00000888089, ENST00000888090, ENST00000888091, ENST00000888092, ENST00000927762, ENST00000927763, ENST00000927764, ENST00000927765, ENST00000927766, ENST00000927767, ENST00000927768, ENST00000927769, ENST00000950490, ENST00000950491, ENST00000950492
RefSeq mRNA: 1 — MANE Select: NM_005973
NM_005973
CCDS: CCDS1157
Canonical transcript exons
ENST00000271526 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000959080 | 156794665 | 156794808 |
| ENSE00000959081 | 156797276 | 156797341 |
| ENSE00001833466 | 156767535 | 156768239 |
| ENSE00001870245 | 156800374 | 156800815 |
| ENSE00003510161 | 156786608 | 156787174 |
| ENSE00003525835 | 156782282 | 156782329 |
| ENSE00003607660 | 156791697 | 156791792 |
Expression profiles
Bgee: expression breadth ubiquitous, 288 present calls, max score 96.92.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 57.7872 / max 357.8567, expressed in 1821 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 5775 | 56.8173 | 1820 |
| 5776 | 0.3372 | 152 |
| 5777 | 0.2468 | 83 |
| 5771 | 0.1953 | 99 |
| 5774 | 0.1310 | 31 |
| 5773 | 0.0597 | 10 |
Top tissues by expression
298 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 96.92 | gold quality |
| ganglionic eminence | UBERON:0004023 | 96.53 | gold quality |
| ventricular zone | UBERON:0003053 | 95.57 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 95.26 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 95.26 | gold quality |
| cerebellar cortex | UBERON:0002129 | 95.17 | gold quality |
| right frontal lobe | UBERON:0002810 | 94.99 | gold quality |
| skin of leg | UBERON:0001511 | 94.95 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 94.83 | gold quality |
| skin of abdomen | UBERON:0001416 | 94.82 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 94.82 | gold quality |
| gastrocnemius | UBERON:0001388 | 94.78 | gold quality |
| stromal cell of endometrium | CL:0002255 | 94.61 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 94.56 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 94.35 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 94.32 | gold quality |
| body of uterus | UBERON:0009853 | 94.23 | gold quality |
| apex of heart | UBERON:0002098 | 94.20 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 94.16 | gold quality |
| muscle of leg | UBERON:0001383 | 94.14 | gold quality |
| granulocyte | CL:0000094 | 94.11 | gold quality |
| right lung | UBERON:0002167 | 94.10 | gold quality |
| endocervix | UBERON:0000458 | 94.02 | gold quality |
| ectocervix | UBERON:0012249 | 93.96 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 93.93 | gold quality |
| left uterine tube | UBERON:0001303 | 93.92 | gold quality |
| lower esophagus | UBERON:0013473 | 93.92 | gold quality |
| right ovary | UBERON:0002118 | 93.85 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 93.83 | gold quality |
| prefrontal cortex | UBERON:0000451 | 93.77 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.79 |
| E-GEOD-110499 | no | 253.81 |
| E-MTAB-8060 | no | 111.26 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
31 targeting PRCC, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
| HSA-MIR-1343-3P | 99.89 | 66.78 | 1815 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-4307 | 99.82 | 70.45 | 3374 |
| HSA-MIR-92A-2-5P | 99.75 | 67.01 | 2164 |
| HSA-MIR-378G | 99.71 | 64.90 | 1106 |
| HSA-MIR-33A-3P | 99.70 | 70.27 | 3362 |
| HSA-MIR-646 | 99.68 | 67.84 | 1645 |
| HSA-MIR-4499 | 99.62 | 67.29 | 1470 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-4498 | 99.47 | 67.42 | 2360 |
| HSA-MIR-6852-5P | 99.17 | 66.69 | 2073 |
| HSA-MIR-3160-3P | 99.07 | 64.78 | 955 |
| HSA-MIR-5001-5P | 99.05 | 66.76 | 1972 |
| HSA-MIR-1207-3P | 98.99 | 66.22 | 1532 |
| HSA-MIR-939-3P | 98.97 | 65.07 | 2347 |
| HSA-MIR-421 | 98.90 | 67.04 | 1883 |
| HSA-MIR-29B-1-5P | 98.86 | 68.35 | 1364 |
| HSA-MIR-7155-5P | 98.65 | 66.14 | 1290 |
| HSA-MIR-615-5P | 98.10 | 63.76 | 591 |
| HSA-MIR-6742-3P | 97.95 | 64.50 | 1490 |
| HSA-MIR-4494 | 97.86 | 64.93 | 850 |
| HSA-MIR-2278 | 97.30 | 66.19 | 1130 |
| HSA-MIR-1225-3P | 97.29 | 64.60 | 876 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 20.9% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 3)
- Our data suggest a scenario in which, during the course of renal cell carcinoma development, an initial PRCCTFE3-induced cell cycle delay must be numbed, thus permitting continued proliferation and progression towards full-blown malignancy. (PMID:19422821)
- results reveal that PRCC-TFE3 dual-fusion FISH probe is an efficient and concise technique for diagnosing PRCC-TFE3 RCC in paraffin-embedded tissue (PMID:28949976)
- PRCC-TFE3 fusion-mediated PRKN/parkin-dependent mitophagy promotes cell survival and proliferation in PRCC-TFE3 translocation renal cell carcinoma. (PMID:33019842)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | prcc | ENSDARG00000063252 |
| mus_musculus | Prcc | ENSMUSG00000004895 |
| rattus_norvegicus | Prcc | ENSRNOG00000012933 |
| drosophila_melanogaster | CG17249 | FBGN0035249 |
| caenorhabditis_elegans | WBGENE00008034 |
Protein
Protein identifiers
Proline-rich protein PRCC — Q92733 (reviewed: Q92733)
Alternative names: Papillary renal cell carcinoma translocation-associated gene protein
All UniProt accessions (4): Q92733, A0A0S2Z456, H0Y679, H0YE12
UniProt curated annotations — full annotation on UniProt →
Function. May regulate cell cycle progression through interaction with MAD2L2.
Subunit / interactions. Interacts with MAD2L2; the interaction is direct.
Subcellular location. Nucleus.
Tissue specificity. Ubiquitous in fetal and adult tissues.
Disease relevance. A chromosomal aberration involving PRCC is found in patients with papillary renal cell carcinoma. Translocation t(X;1)(p11.2;q21.2) with TFE3.
RefSeq proteins (1): NP_005964* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR018800 | PRCC | Family |
Pfam: PF10253
UniProt features (22 total): modified residue 9, compositionally biased region 7, region of interest 4, chain 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q92733-F1 | 59.89 | 0.06 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (9): 97, 114, 157, 159, 212, 218, 239, 241, 267
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-72163 | mRNA Splicing - Major Pathway |
| R-HSA-9918481 | Dengue Virus-Host Interactions |
MSigDB gene sets: 156 (showing top):
PATIL_LIVER_CANCER, REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA, GOBP_REGULATION_OF_CELL_CYCLE, REACTOME_MRNA_SPLICING, MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_17, TANAKA_METHYLATED_IN_ESOPHAGEAL_CARCINOMA, BOYAULT_LIVER_CANCER_SUBCLASS_G12_UP, MODULE_18, MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_24, DURCHDEWALD_SKIN_CARCINOGENESIS_DN, REACTOME_METABOLISM_OF_RNA, TGGAAA_NFAT_Q4_01, GOCC_NUCLEAR_SPECK, GOCC_NUCLEAR_BODY, TCCCRNNRTGC_UNKNOWN
GO Biological Process (1): regulation of cell cycle (GO:0051726)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (3): nucleus (GO:0005634), nucleoplasm (GO:0005654), nuclear speck (GO:0016607)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| mRNA Splicing | 1 |
| Dengue Virus Infection | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell cycle | 1 |
| regulation of cellular process | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| cellular anatomical structure | 1 |
| nuclear ribonucleoprotein granule | 1 |
Protein interactions and networks
STRING
1256 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PRCC | ASPSCR1 | Q9BZE9 | 967 |
| PRCC | TFE3 | P19532 | 964 |
| PRCC | TFEB | P19484 | 820 |
| PRCC | CLTC | Q00610 | 820 |
| PRCC | SFPQ | P23246 | 812 |
| PRCC | MAD2L2 | Q9UI95 | 760 |
| PRCC | NONO | P30807 | 716 |
| PRCC | LUC7L3 | O95232 | 710 |
| PRCC | ZNF830 | Q96NB3 | 696 |
| PRCC | CRNKL1 | Q9BZJ0 | 682 |
| PRCC | TBC1D25 | Q3MII6 | 669 |
| PRCC | RBM10 | P98175 | 658 |
| PRCC | HLF | Q16534 | 649 |
| PRCC | MITF | O75030 | 644 |
| PRCC | KANSL2 | Q9H9L4 | 638 |
IntAct
84 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PRCC | NTC20 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PRCC | HOMER3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EGFR | PRCC | psi-mi:“MI:0915”(physical association) | 0.550 |
| IWS1 | SUPT5H | psi-mi:“MI:0914”(association) | 0.530 |
| PRCC | BCAS2 | psi-mi:“MI:0914”(association) | 0.530 |
| SYNGAP1 | IGF2BP3 | psi-mi:“MI:0914”(association) | 0.530 |
| SYNGAP1 | SEC16A | psi-mi:“MI:0914”(association) | 0.530 |
| FKBP9 | CASC3 | psi-mi:“MI:0914”(association) | 0.530 |
| PLOD3 | PLOD2 | psi-mi:“MI:0914”(association) | 0.530 |
| CSNK2A1 | PRCC | psi-mi:“MI:0217”(phosphorylation reaction) | 0.440 |
| PRCC | DNAJC10 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SF3A2 | PRCC | psi-mi:“MI:0915”(physical association) | 0.400 |
| RBM10 | PRCC | psi-mi:“MI:0915”(physical association) | 0.370 |
| LSM2 | PRCC | psi-mi:“MI:0915”(physical association) | 0.370 |
| PRCC | PRPF19 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PPIL2 | PRCC | psi-mi:“MI:0915”(physical association) | 0.370 |
| PRCC | TOE1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CEP170P1 | PCYT1A | psi-mi:“MI:0914”(association) | 0.350 |
| Bcas2 | PEX10 | psi-mi:“MI:0914”(association) | 0.350 |
| YWHAZ | WDR62 | psi-mi:“MI:0914”(association) | 0.350 |
| Crnkl1 | PLRG1 | psi-mi:“MI:0914”(association) | 0.350 |
| HSF2 | RBBP6 | psi-mi:“MI:0914”(association) | 0.350 |
| SOD1 | FAAP20 | psi-mi:“MI:0914”(association) | 0.350 |
| LRP8 | TYK2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (122): PRCC (Affinity Capture-MS), PRCC (Proximity Label-MS), PRCC (Affinity Capture-MS), PRCC (Affinity Capture-MS), PRCC (Affinity Capture-MS), PRCC (Affinity Capture-MS), PRCC (Affinity Capture-MS), PRCC (Affinity Capture-MS), PRCC (Affinity Capture-MS), PRCC (Affinity Capture-MS), PRCC (Affinity Capture-MS), PRCC (Affinity Capture-MS), PRCC (Affinity Capture-MS), PRCC (Affinity Capture-MS), PRCC (Affinity Capture-MS)
ESM2 similar proteins: A4PB26, D3ZTQ1, G1SW77, O16053, O88271, Q12872, Q32LE2, Q3MHS2, Q3U155, Q3USH5, Q4ADK4, Q4ADK7, Q4VAA2, Q5M8L3, Q5PQP2, Q5PQS7, Q5RKH3, Q5VSY0, Q5XHI2, Q5XIG5, Q5XIM5, Q5ZLH9, Q60FC2, Q63ZM9, Q6AXS5, Q6DIS2, Q6DJ13, Q6GNQ4, Q6NWC9, Q6PFK1, Q75UQ2, Q7T370, Q7ZYA6, Q8HXY9, Q8K039, Q8MMC4, Q8NC51, Q8R1N0, Q92733, Q96NB3
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRCC | up-regulates | MAD2L2 | relocalization |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 104 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| mRNA 3’-end processing | 7 | 18.9× | 4e-06 |
| Transport of Mature mRNA derived from an Intron-Containing Transcript | 8 | 16.7× | 1e-06 |
| mRNA Splicing | 11 | 16.6× | 4e-09 |
| Processing of Capped Intron-Containing Pre-mRNA | 14 | 15.8× | 3e-11 |
| mRNA Splicing - Minor Pathway | 5 | 15.3× | 8e-04 |
| RNA Polymerase II Transcription Termination | 5 | 15.0× | 8e-04 |
| mRNA Splicing - Major Pathway | 20 | 15.0× | 6e-16 |
| mRNA Polyadenylation | 12 | 14.4× | 3e-09 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mRNA transport | 7 | 19.4× | 2e-05 |
| mRNA splicing, via spliceosome | 17 | 16.4× | 2e-13 |
| negative regulation of translation | 6 | 12.4× | 1e-03 |
| mRNA processing | 12 | 9.9× | 1e-06 |
| RNA splicing | 9 | 8.4× | 2e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
82 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 57 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1399 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:156782276:TCTTA:T | acceptor_loss | 1.0000 |
| 1:156782277:CTTA:C | acceptor_loss | 1.0000 |
| 1:156782278:TTAG:T | acceptor_loss | 1.0000 |
| 1:156782279:TA:T | acceptor_loss | 1.0000 |
| 1:156782280:A:AG | acceptor_gain | 1.0000 |
| 1:156782280:AGT:A | acceptor_loss | 1.0000 |
| 1:156782281:G:C | acceptor_loss | 1.0000 |
| 1:156782281:G:GA | acceptor_gain | 1.0000 |
| 1:156782281:GTC:G | acceptor_gain | 1.0000 |
| 1:156782281:GTCA:G | acceptor_gain | 1.0000 |
| 1:156782330:GTAAG:G | donor_loss | 1.0000 |
| 1:156782331:T:A | donor_loss | 1.0000 |
| 1:156786587:T:G | acceptor_gain | 1.0000 |
| 1:156786593:A:AG | acceptor_gain | 1.0000 |
| 1:156786593:ACCT:A | acceptor_gain | 1.0000 |
| 1:156786593:ACCTG:A | acceptor_gain | 1.0000 |
| 1:156786596:T:TA | acceptor_gain | 1.0000 |
| 1:156791790:GCA:G | donor_gain | 1.0000 |
| 1:156791793:G:GG | donor_gain | 1.0000 |
| 1:156791798:T:G | donor_gain | 1.0000 |
| 1:156794659:TTCCA:T | acceptor_gain | 1.0000 |
| 1:156794660:TCCAG:T | acceptor_gain | 1.0000 |
| 1:156794661:CCA:C | acceptor_gain | 1.0000 |
| 1:156794662:CAG:C | acceptor_gain | 1.0000 |
| 1:156794663:A:AG | acceptor_gain | 1.0000 |
| 1:156794663:AG:A | acceptor_gain | 1.0000 |
| 1:156794664:G:A | acceptor_gain | 1.0000 |
| 1:156794664:G:GT | acceptor_gain | 1.0000 |
| 1:156794664:GT:G | acceptor_gain | 1.0000 |
| 1:156794664:GTT:G | acceptor_gain | 1.0000 |
AlphaMissense
3159 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:156786825:T:A | I245N | 1.000 |
| 1:156786837:C:A | A249D | 1.000 |
| 1:156797292:C:A | P447Q | 1.000 |
| 1:156797307:G:C | R452P | 1.000 |
| 1:156797310:G:C | R453P | 1.000 |
| 1:156797312:A:G | K454E | 1.000 |
| 1:156797313:A:T | K454I | 1.000 |
| 1:156797314:A:C | K454N | 1.000 |
| 1:156797314:A:T | K454N | 1.000 |
| 1:156797315:C:G | H455D | 1.000 |
| 1:156797316:A:C | H455P | 1.000 |
| 1:156797317:C:A | H455Q | 1.000 |
| 1:156797317:C:G | H455Q | 1.000 |
| 1:156797319:A:C | Q456P | 1.000 |
| 1:156797322:T:A | I457N | 1.000 |
| 1:156797322:T:C | I457T | 1.000 |
| 1:156797322:T:G | I457S | 1.000 |
| 1:156797327:T:A | Y459N | 1.000 |
| 1:156797327:T:C | Y459H | 1.000 |
| 1:156797327:T:G | Y459D | 1.000 |
| 1:156797331:T:A | L460H | 1.000 |
| 1:156797331:T:C | L460P | 1.000 |
| 1:156797331:T:G | L460R | 1.000 |
| 1:156797334:T:A | I461N | 1.000 |
| 1:156797336:C:G | H462D | 1.000 |
| 1:156797337:A:C | H462P | 1.000 |
| 1:156797340:A:C | Q463P | 1.000 |
| 1:156800374:G:C | A464P | 1.000 |
| 1:156800375:C:A | A464D | 1.000 |
| 1:156800384:G:C | R467P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000093462 (1:156799626 T>C), RS1000155101 (1:156785598 A>G,T), RS1000176720 (1:156786447 C>T), RS1000357472 (1:156793235 G>C), RS1000371192 (1:156792899 C>T), RS1000460168 (1:156786137 A>G), RS1000473839 (1:156773842 A>G), RS1000536870 (1:156766750 C>T), RS1000626471 (1:156780161 G>A,C), RS1000762210 (1:156787452 T>C,G), RS1000847451 (1:156774126 G>A,C), RS1000968408 (1:156791302 C>T), RS1000997257 (1:156767133 G>A), RS1001089561 (1:156787743 C>T), RS1001098141 (1:156798238 T>C)
Disease associations
OMIM: gene MIM:179755 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (1): Hereditary papillary renal cell carcinoma (Orphanet:47044)
HPO phenotypes
4 total (4 of 4 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0001442 | Typified by somatic mosaicism |
| HP:0003829 | Typified by incomplete penetrance |
| HP:0006766 | Papillary renal cell carcinoma |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004061_1 | Sjögren’s syndrome | 2.000000e-06 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
32 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| methylmercuric chloride | increases expression, affects cotreatment | 2 |
| Cadmium Chloride | increases abundance, decreases expression | 2 |
| FR900359 | affects phosphorylation | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pirinixic acid | increases expression, affects binding, increases activity | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| sodium arsenite | decreases expression | 1 |
| 4-aminophenylarsenoxide | affects binding, decreases reaction | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| nutlin 3 | affects cotreatment, increases secretion | 1 |
| ICG 001 | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Arsenic Trioxide | affects binding, decreases reaction | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Leflunomide | decreases expression | 1 |
| Vehicle Emissions | increases abundance, increases expression | 1 |
| Cadmium | decreases expression, increases abundance | 1 |
| Caffeine | increases phosphorylation | 1 |
| Dactinomycin | affects cotreatment, increases secretion | 1 |
| Doxorubicin | decreases expression | 1 |
| Ketoconazole | increases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Quercetin | increases phosphorylation | 1 |
| Urethane | increases expression | 1 |
| Valproic Acid | increases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
Cellosaurus cell lines
6 cell lines: 5 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B099 | UOK120 | Cancer cell line | Male |
| CVCL_B105 | UOK124 | Cancer cell line | Female |
| CVCL_B123 | UOK146 | Cancer cell line | Female |
| CVCL_B3EQ | Abcam HEK293T PRCC KO | Transformed cell line | Female |
| CVCL_WY83 | CL89-12117 | Cancer cell line | Male |
| CVCL_WY84 | CL89-17872 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Sjogren syndrome