PRDM6-AS1

Summary

PRDM6-AS1 (PRDM6 antisense RNA 1, HGNC:55869) is a long non-coding RNA gene on chromosome 5q23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55869
Approved symbol	PRDM6-AS1
Name	PRDM6 antisense RNA 1
Location	5q23.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223652
Ensembl biotype	lncRNA
Entrez	105379152
RNAcentral	URS0000BC43B2 — lncRNA, 1969 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000442777, ENST00000458103, ENST00000798745, ENST00000798746, ENST00000798747

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000442777 — 2 exons

Exon	Start	End
ENSE00004186637	123087248	123087939
ENSE00004186641	123089196	123089421

Expression profiles

Bgee: expression breadth ubiquitous, 142 present calls, max score 88.92.

Top tissues by expression

240 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
pancreatic ductal cell	CL:0002079	88.92	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.48	gold quality
right coronary artery	UBERON:0001625	77.07	gold quality
descending thoracic aorta	UBERON:0002345	76.54	gold quality
thoracic aorta	UBERON:0001515	75.32	gold quality
ascending aorta	UBERON:0001496	75.16	gold quality
left coronary artery	UBERON:0001626	74.70	gold quality
aorta	UBERON:0000947	74.14	gold quality
buccal mucosa cell	CL:0002336	74.07	gold quality
popliteal artery	UBERON:0002250	73.56	gold quality
tibial artery	UBERON:0007610	73.52	gold quality
coronary artery	UBERON:0001621	73.30	gold quality
mucosa of stomach	UBERON:0001199	71.07	gold quality
muscle layer of sigmoid colon	UBERON:0035805	69.77	gold quality
upper arm skin	UBERON:0004263	69.07	gold quality
kidney epithelium	UBERON:0004819	68.50	gold quality
tendon of biceps brachii	UBERON:0008188	67.25	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	66.59	gold quality
tendon	UBERON:0000043	66.02	gold quality
cartilage tissue	UBERON:0002418	65.89	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	65.42	gold quality
ganglionic eminence	UBERON:0004023	65.14	gold quality
sural nerve	UBERON:0015488	64.85	gold quality
gall bladder	UBERON:0002110	64.46	gold quality
left ovary	UBERON:0002119	64.14	gold quality
smooth muscle tissue	UBERON:0001135	63.96	gold quality
urinary bladder	UBERON:0001255	63.94	gold quality
right ovary	UBERON:0002118	63.92	gold quality
nasal cavity epithelium	UBERON:0005384	63.80	gold quality
skeletal muscle tissue	UBERON:0001134	63.42	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.