PRDM9-AS1

Summary

PRDM9-AS1 (PRDM9 antisense RNA 1, HGNC:59016) is a long non-coding RNA gene on chromosome 5p14.2.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59016
Approved symbol	PRDM9-AS1
Name	PRDM9 antisense RNA 1
Location	5p14.2
Locus type	RNA, long non-coding
Status	Approved
Entrez	124901171

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000182506 (5:23453466 A>G), RS1000183013 (5:23453687 G>T), RS1000203170 (5:23457773 G>C), RS1000358971 (5:23447657 G>C,T), RS1000583604 (5:23458035 A>G), RS1000824591 (5:23453696 A>G), RS1001010183 (5:23446257 C>T), RS1001139418 (5:23440149 A>T), RS1001183901 (5:23456927 C>T), RS1001281428 (5:23458547 C>T), RS1001393440 (5:23446622 A>G), RS1001435829 (5:23452421 C>G), RS1001506601 (5:23440785 T>C), RS1002036843 (5:23439020 A>G), RS1002089193 (5:23438768 CA>C)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.